Guide to the Human Genome
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Search of human proteins with 169172205

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169172205 PREDICTED: hypothetical protein [Homo sapiens]
         (249 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169171345 PREDICTED: hypothetical protein [Homo sapiens]           525   e-149
gi|169172205 PREDICTED: hypothetical protein [Homo sapiens]           525   e-149
gi|169170949 PREDICTED: hypothetical protein [Homo sapiens]           525   e-149
gi|239508745 PREDICTED: hypothetical protein [Homo sapiens]           465   e-131
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho...    52   5e-07
gi|239754458 PREDICTED: hypothetical protein [Homo sapiens]            52   6e-07
gi|239749008 PREDICTED: hypothetical protein XP_002346879 [Homo ...    52   6e-07
gi|239743028 PREDICTED: hypothetical protein XP_002342721 [Homo ...    52   6e-07
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]            49   3e-06
gi|163965366 nascent polypeptide-associated complex alpha subuni...    48   7e-06
gi|24308227 zinc finger protein 687 [Homo sapiens]                     47   2e-05
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho...    47   2e-05
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho...    47   2e-05
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho...    47   2e-05
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    46   3e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    46   3e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    46   3e-05
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H...    46   3e-05
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      45   5e-05
gi|19924099 synapsin I isoform Ia [Homo sapiens]                       45   5e-05
gi|19924097 synapsin I isoform Ib [Homo sapiens]                       45   5e-05
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]     45   5e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      45   6e-05
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]     45   6e-05
gi|118498339 EMI domain containing 2 [Homo sapiens]                    45   6e-05
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ...    44   1e-04
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ...    44   1e-04
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]            44   1e-04
gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens]       44   1e-04
gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens]       44   1e-04

>gi|169171345 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 249

 Score =  525 bits (1353), Expect = e-149
 Identities = 249/249 (100%), Positives = 249/249 (100%)

Query: 1   MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG 60
           MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG
Sbjct: 1   MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG 60

Query: 61  GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP 120
           GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP
Sbjct: 61  GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP 120

Query: 121 RGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGC 180
           RGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGC
Sbjct: 121 RGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGC 180

Query: 181 SRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKRKL 240
           SRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKRKL
Sbjct: 181 SRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKRKL 240

Query: 241 VFTTHSKPE 249
           VFTTHSKPE
Sbjct: 241 VFTTHSKPE 249


>gi|169172205 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 249

 Score =  525 bits (1353), Expect = e-149
 Identities = 249/249 (100%), Positives = 249/249 (100%)

Query: 1   MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG 60
           MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG
Sbjct: 1   MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG 60

Query: 61  GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP 120
           GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP
Sbjct: 61  GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP 120

Query: 121 RGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGC 180
           RGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGC
Sbjct: 121 RGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGC 180

Query: 181 SRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKRKL 240
           SRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKRKL
Sbjct: 181 SRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKRKL 240

Query: 241 VFTTHSKPE 249
           VFTTHSKPE
Sbjct: 241 VFTTHSKPE 249


>gi|169170949 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 249

 Score =  525 bits (1353), Expect = e-149
 Identities = 249/249 (100%), Positives = 249/249 (100%)

Query: 1   MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG 60
           MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG
Sbjct: 1   MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG 60

Query: 61  GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP 120
           GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP
Sbjct: 61  GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP 120

Query: 121 RGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGC 180
           RGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGC
Sbjct: 121 RGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGC 180

Query: 181 SRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKRKL 240
           SRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKRKL
Sbjct: 181 SRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKRKL 240

Query: 241 VFTTHSKPE 249
           VFTTHSKPE
Sbjct: 241 VFTTHSKPE 249


>gi|239508745 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 249

 Score =  465 bits (1197), Expect = e-131
 Identities = 228/251 (90%), Positives = 230/251 (91%), Gaps = 4/251 (1%)

Query: 1   MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG 60
           MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG
Sbjct: 1   MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG 60

Query: 61  GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP 120
           GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP
Sbjct: 61  GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP 120

Query: 121 RGRLPWVTGPRPAGSLPAAQ--SPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGR 178
           RGRLPWVTGPRPAGSLPAAQ  +   A R GR     R C  +  G A   EAPQPTGGR
Sbjct: 121 RGRLPWVTGPRPAGSLPAAQFAAASGAARAGR--RRERACAGRSAGDAAGPEAPQPTGGR 178

Query: 179 GCSRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKR 238
           GCSRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKR
Sbjct: 179 GCSRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKR 238

Query: 239 KLVFTTHSKPE 249
           KLVFTTHSKPE
Sbjct: 239 KLVFTTHSKPE 249


>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
           sapiens]
          Length = 247

 Score = 52.0 bits (123), Expect = 5e-07
 Identities = 49/166 (29%), Positives = 61/166 (36%), Gaps = 24/166 (14%)

Query: 2   GPGQHGVAPPPAGRERLQ-----NKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEA 56
           G  Q    PPP G+   +     N++  P P P +P    P GG         PG     
Sbjct: 64  GGNQSQGPPPPPGKPEGRPPQGGNQSQGPPPHPGKPERPPPQGGNQSQGTPPPPGKPERP 123

Query: 57  GTRGGREGHRRLRQPPTPSAPP--------GSPLHEGFLLIALFPSSQNRHRSAGRGLAG 108
             +GG + HR    P  P  PP        G P H G       P   N+ RSA R   G
Sbjct: 124 PPQGGNQSHRPPPPPGKPERPPPQGGNQSQGPPPHPG-KPEGPPPQEGNKSRSA-RSPPG 181

Query: 109 RLQQV------RPGAAGPRGRLPWVTGPRPAGSLPAAQSPPPAERP 148
           + Q        +P    P G+     GP PAG  P     PPA +P
Sbjct: 182 KPQGPPQQEGNKPQGPPPPGK---PQGPPPAGGNPQQPQAPPAGKP 224



 Score = 34.3 bits (77), Expect = 0.10
 Identities = 42/181 (23%), Positives = 55/181 (30%), Gaps = 7/181 (3%)

Query: 11  PPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLRQ 70
           P   R +  N+   P P P +P    P GG         PG       +GG +       
Sbjct: 36  PEGRRPQGGNQPQRPPPPPGKPQGPPPQGGNQSQGPPPPPGKPEGRPPQGGNQSQ---GP 92

Query: 71  PPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGP 130
           PP P  P   P   G       P      R   +G  G      P   G   R P   G 
Sbjct: 93  PPHPGKPERPPPQGGNQSQGTPPPPGKPERPPPQG--GNQSHRPPPPPGKPERPPPQGGN 150

Query: 131 RPAGSLPAAQSP--PPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGCSRGSATAS 188
           +  G  P    P  PP +   +  +     G  +G   +    PQ     G  +G   A 
Sbjct: 151 QSQGPPPHPGKPEGPPPQEGNKSRSARSPPGKPQGPPQQEGNKPQGPPPPGKPQGPPPAG 210

Query: 189 G 189
           G
Sbjct: 211 G 211


>gi|239754458 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 180

 Score = 51.6 bits (122), Expect = 6e-07
 Identities = 54/163 (33%), Positives = 68/163 (41%), Gaps = 21/163 (12%)

Query: 11  PPAGRERLQNKAWSPAP-APARPPLNQPPGGKALSTRALQPG--GALEAGTRGGREGHRR 67
           PPA R RL  +  SP+P A A PPL Q P G         PG  G  +  +RG R G R 
Sbjct: 19  PPAARGRLPGETLSPSPRAAALPPLQQRPPG--------APGALGRPKPVSRGPRAGLRE 70

Query: 68  LRQPPTPSAPPGSPLHEGFLLIALFPSSQNR-------HRSAGRGLAGRLQQVRPGAAGP 120
             Q P    P G+PL +     A  P S +R        R + R     + +V P    P
Sbjct: 71  WPQQPWRPGPLGAPLQDR-APSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRP 129

Query: 121 RGRLPWVTGPRPA-GSLPAAQSPPPAERPGRDAAGARVCGTQR 162
            G L     PRP  G+ P   +PP   RP        V G++R
Sbjct: 130 AG-LHRSREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSER 171


>gi|239749008 PREDICTED: hypothetical protein XP_002346879 [Homo
           sapiens]
          Length = 180

 Score = 51.6 bits (122), Expect = 6e-07
 Identities = 54/163 (33%), Positives = 68/163 (41%), Gaps = 21/163 (12%)

Query: 11  PPAGRERLQNKAWSPAP-APARPPLNQPPGGKALSTRALQPG--GALEAGTRGGREGHRR 67
           PPA R RL  +  SP+P A A PPL Q P G         PG  G  +  +RG R G R 
Sbjct: 19  PPAARGRLPGETLSPSPRAAALPPLQQRPPG--------APGALGRPKPVSRGPRAGLRE 70

Query: 68  LRQPPTPSAPPGSPLHEGFLLIALFPSSQNR-------HRSAGRGLAGRLQQVRPGAAGP 120
             Q P    P G+PL +     A  P S +R        R + R     + +V P    P
Sbjct: 71  WPQQPWRPGPLGAPLQDR-APSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRP 129

Query: 121 RGRLPWVTGPRPA-GSLPAAQSPPPAERPGRDAAGARVCGTQR 162
            G L     PRP  G+ P   +PP   RP        V G++R
Sbjct: 130 AG-LHRSREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSER 171


>gi|239743028 PREDICTED: hypothetical protein XP_002342721 [Homo
           sapiens]
          Length = 180

 Score = 51.6 bits (122), Expect = 6e-07
 Identities = 54/163 (33%), Positives = 68/163 (41%), Gaps = 21/163 (12%)

Query: 11  PPAGRERLQNKAWSPAP-APARPPLNQPPGGKALSTRALQPG--GALEAGTRGGREGHRR 67
           PPA R RL  +  SP+P A A PPL Q P G         PG  G  +  +RG R G R 
Sbjct: 19  PPAARGRLPGETLSPSPRAAALPPLQQRPPG--------APGALGRPKPVSRGPRAGLRE 70

Query: 68  LRQPPTPSAPPGSPLHEGFLLIALFPSSQNR-------HRSAGRGLAGRLQQVRPGAAGP 120
             Q P    P G+PL +     A  P S +R        R + R     + +V P    P
Sbjct: 71  WPQQPWRPGPLGAPLQDR-APSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRP 129

Query: 121 RGRLPWVTGPRPA-GSLPAAQSPPPAERPGRDAAGARVCGTQR 162
            G L     PRP  G+ P   +PP   RP        V G++R
Sbjct: 130 AG-LHRSREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSER 171


>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 480

 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 50/160 (31%), Positives = 61/160 (38%), Gaps = 21/160 (13%)

Query: 21  KAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLRQPPTPSAPPGS 80
           K+  P P     P  QP G  A   R  +PG A E  +R  R   R  R PP P   PG+
Sbjct: 195 KSQPPLPQETAAPAPQP-GPTAPPARVREPGRA-EGASREPRLRSRAARPPPAPG--PGA 250

Query: 81  PLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQ 140
                        S  +R R+AGR   G       G      R P   G R  G+L  A 
Sbjct: 251 ------------LSRASRSRAAGRPGPG----FHGGEKAAAPRAPGGGGGRNPGALGRAA 294

Query: 141 SPPPAERPGRDAAGARVCGTQRGGCARAAEA-PQPTGGRG 179
            P  A +     +G    G +RG C RA  + P  T G G
Sbjct: 295 PPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNG 334


>gi|163965366 nascent polypeptide-associated complex alpha subunit
            isoform a [Homo sapiens]
          Length = 2078

 Score = 48.1 bits (113), Expect = 7e-06
 Identities = 51/174 (29%), Positives = 61/174 (35%), Gaps = 11/174 (6%)

Query: 10   PPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALST--RALQPGGALEAGTRGG--REGH 65
            P P G     +  W+P P  A PP   P GG A  +   A  P  A     +GG      
Sbjct: 948  PSPKGGPATPSPKWAPTPPAATPP--SPKGGPATPSPKGAPTPPAATPPSPKGGPATPSP 1005

Query: 66   RRLRQPP--TPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGR 123
            +    PP  TP +P GSP    F   A  P +       G   A  L +  P    P   
Sbjct: 1006 KGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAP--TTPAAT 1063

Query: 124  LPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGG 177
            LP   G     SL  A +PP A  P     G      +      AA  P P GG
Sbjct: 1064 LPSPKGGPATPSLKGAPTPPAATPPS-PKGGPATPSPKGAPMPPAATPPSPKGG 1116



 Score = 33.1 bits (74), Expect = 0.23
 Identities = 32/115 (27%), Positives = 44/115 (38%), Gaps = 18/115 (15%)

Query: 72  PTPSAPPGSPLHEGFLLIALFPSSQNRHRS--AGRGLAGRLQQVRPGAAGPRGRL--PWV 127
           P P   P +P  +    +++  SS  + R+  A +G+        P +  P+G    P  
Sbjct: 894 PFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGI--------PASPSPKGAPTPPAA 945

Query: 128 TGPRPAGSLPAAQSP-----PPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGG 177
           T P P G  PA  SP     PPA  P     G      +      AA  P P GG
Sbjct: 946 TPPSPKGG-PATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGG 999



 Score = 32.0 bits (71), Expect = 0.52
 Identities = 56/218 (25%), Positives = 77/218 (35%), Gaps = 43/218 (19%)

Query: 9    APPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRL 68
            A PP+ +  L     SP  AP  P    P     L+T + +      A T          
Sbjct: 1200 ATPPSPKGGLATP--SPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAAT---------- 1247

Query: 69   RQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAA-----GPRGR 123
              PP+P   P +P  +G    A  P +       G GLA    +  P  A      P+G 
Sbjct: 1248 --PPSPKGGPATPPPKG----APTPPAATPPSLKG-GLATPPHKGAPNPAVVTPPSPKGG 1300

Query: 124  LPWVTGPRPAGSLPAAQSPPPAERP------GRDAAGARVCGTQRGGCARAAEAPQPTGG 177
             P  + P+ A + PAA  P P   P      G     A    + +G     A  P   GG
Sbjct: 1301 -PATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGG 1359

Query: 178  -------RGCSRGSATASGVGGKAI-----KKAQRIPA 203
                    G +  +AT S  GG A+     K+   IP+
Sbjct: 1360 PTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPS 1397


>gi|24308227 zinc finger protein 687 [Homo sapiens]
          Length = 1237

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 45/143 (31%), Positives = 58/143 (40%), Gaps = 13/143 (9%)

Query: 12  PAGRERLQNKAWSPAPA-PARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLRQ 70
           P G  R+QN   SP P+ P  P    PP G     + ++    L+     G E       
Sbjct: 117 PVGPHRMQNGFGSPEPSLPGTPHSPAPPSGGTWKEKGMEGKTPLDLFAHFGPEPGDH-SD 175

Query: 71  PPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGL--------AGRLQQVRPGAAGPRG 122
           P  PSAP  SP  EG L    FPSS    +  G G+         G L+Q       P+ 
Sbjct: 176 PLPPSAP--SPTREGALTPPPFPSSFELAQENGPGMQPPVSSPPLGALKQESCSPHHPQV 233

Query: 123 RLPWVTGPRP-AGSLPAAQSPPP 144
                +G  P A  +PA+ SPPP
Sbjct: 234 LAQQGSGSSPKATDIPASASPPP 256



 Score = 30.4 bits (67), Expect = 1.5
 Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 13/88 (14%)

Query: 3   PGQHGVAPPPAGRERLQNKAWSPAPAPA------------RPPLNQPPGGKALSTRALQP 50
           PG H    PP+     +  A +P P P+            +PP++ PP G AL   +  P
Sbjct: 170 PGDHSDPLPPSAPSPTREGALTPPPFPSSFELAQENGPGMQPPVSSPPLG-ALKQESCSP 228

Query: 51  GGALEAGTRGGREGHRRLRQPPTPSAPP 78
                   +G     +    P + S PP
Sbjct: 229 HHPQVLAQQGSGSSPKATDIPASASPPP 256


>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
            sapiens]
          Length = 1751

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 63/212 (29%), Positives = 78/212 (36%), Gaps = 42/212 (19%)

Query: 1    MGPGQHGVA--------PPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGG 52
            +GP Q G          P P GR   + +   P   P RP +N   G K       +PG 
Sbjct: 1191 LGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPG-RPGRPGMNGLKGEKG------EPGD 1243

Query: 53   A-LEAGTRG--GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGR 109
            A L  G RG  G  G      PP P  PPG+P+++      +F  S    R    GL G 
Sbjct: 1244 ASLGFGMRGMPGPPG------PPGPPGPPGTPVYDS----NVFAESS---RPGPPGLPG- 1289

Query: 110  LQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGR-----DAAGARVCGTQRGG 164
                  G  GP+G    V  P P G  P       AE  G      DA      G   GG
Sbjct: 1290 ----NQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGG 1345

Query: 165  CARAAEAPQPTGGRGCSRGSATASGVGGKAIK 196
                +  P P G  G  RG     G  G++I+
Sbjct: 1346 GFFGSSLPGPPGPPG-PRGYPGIPGPKGESIR 1376



 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 70/247 (28%), Positives = 84/247 (34%), Gaps = 74/247 (29%)

Query: 3    PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG-- 60
            PG  G+ P P         A    P P  PP   PPG      R  +PG   E G  G  
Sbjct: 778  PGPPGL-PCPVSPLGPAGPALQTVPGPQGPP--GPPGRDGTPGRDGEPGDPGEDGKPGDT 834

Query: 61   ---------------GREGHRRL--RQPPTPSAPPGSP----LHEGFLLIALFPSSQNRH 99
                           G +G   +  R PP P  PPG P     H+    I +        
Sbjct: 835  GPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDM-------- 886

Query: 100  RSAGRGLAGRLQQVR-----PGAAGPRGRLPWVTG------------PRPAG--SLPAAQ 140
               G G  G L+ +R     PG  GP G +P + G            P PAG   +P  +
Sbjct: 887  --EGSGFGGDLEALRGPRGFPGPPGPPG-VPGLPGEPGRFGVNSSDVPGPAGLPGVPGRE 943

Query: 141  SPP-------PAERPGRDAAGARVCGTQRGGCARAAE--------APQPTGGRGCSRGSA 185
             PP       P   PGR+    R    Q+G    A          AP P G RG S G A
Sbjct: 944  GPPGFPGLPGPPGPPGREGPPGRT--GQKGSLGEAGAPGHKGSKGAPGPAGARGES-GLA 1000

Query: 186  TASGVGG 192
             A G  G
Sbjct: 1001 GAPGPAG 1007



 Score = 38.9 bits (89), Expect = 0.004
 Identities = 63/208 (30%), Positives = 74/208 (35%), Gaps = 41/208 (19%)

Query: 3    PGQHGVAPPPAGRERLQNK-AWSPAPAPARPPLNQ-PPGGKALSTRALQPGGA------- 53
            PG  G   PP       N  A S  P P   P NQ PPG K        PG         
Sbjct: 1257 PGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDF 1316

Query: 54   --LEAGTRG--------GREGHR-----------RLRQPPTPSAP---PGSPLHEGFLLI 89
              LEA  +G        G++G R            L  PP P  P   PG P  +G  + 
Sbjct: 1317 LQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIR 1376

Query: 90   ALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGP-RPAGSLPAAQSPP-PAER 147
               P         G G  GR  Q  PG  GP G  P   GP R   S+P    PP P   
Sbjct: 1377 GQ-PGPPGPQGPPGIGYEGR--QGPPGPPGPPGP-PSFPGPHRQTISVPGPPGPPGPPGP 1432

Query: 148  PGRDAA--GARVCGTQRGGCARAAEAPQ 173
            PG   A  G R+  T++    +  E P+
Sbjct: 1433 PGTMGASSGVRLWATRQAMLGQVHEVPE 1460



 Score = 38.1 bits (87), Expect = 0.007
 Identities = 62/215 (28%), Positives = 73/215 (33%), Gaps = 47/215 (21%)

Query: 3    PGQHGV----APPPAGRERLQNKAWSPA----PAPARPPLNQPPGGKALSTRALQPGGAL 54
            PG+ GV     P PAG   +  +   P     P P  PP  + P G+     +L   GA 
Sbjct: 920  PGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAP 979

Query: 55   ----------EAGTRG-----GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRH 99
                       AG RG     G  G      PP P  PPG  L  GF        S    
Sbjct: 980  GHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGF---DDMEGSGGPF 1036

Query: 100  RSAGRGLAGRLQQVRPGAAGPRGRLPWVTG-PRPAGSLPAAQSPPPAERPGRDAAGARVC 158
             S  R   G   Q  PG  G +G  P V G P   G + A   P     PGR+     + 
Sbjct: 1037 WSTARSADG--PQGPPGLPGLKGD-PGVPGLPGAKGEVGADGVPGFPGLPGREG----IA 1089

Query: 159  GTQRGGCARAAEAPQPTGGRGC--SRGSATASGVG 191
            G Q            P G RG    +G     GVG
Sbjct: 1090 GPQ-----------GPKGDRGSRGEKGDPGKDGVG 1113



 Score = 34.7 bits (78), Expect = 0.080
 Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 15/90 (16%)

Query: 38  PGGKALST---RALQPGGALEAGTRGGREGHRRLRQPPTPSAPPGSPLHEG--FLLIALF 92
           PG  ++ST       PGG ++ G   G++G   +  PP  + PPGSP   G   L   + 
Sbjct: 729 PGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVS 788

Query: 93  PSSQNRHRSAGRGLAGRLQQVRPGAAGPRG 122
           P           G AG   Q  PG  GP G
Sbjct: 789 P----------LGPAGPALQTVPGPQGPPG 808



 Score = 29.3 bits (64), Expect = 3.3
 Identities = 30/114 (26%), Positives = 39/114 (34%), Gaps = 5/114 (4%)

Query: 3    PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGR 62
            PG  G  P P G   +             PP  Q P G     R   PG     G     
Sbjct: 1353 PGPPG-PPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFP 1411

Query: 63   EGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPG 116
              HR+    P P  PPG P   G     +  SS  R  +  + + G++ +V  G
Sbjct: 1412 GPHRQTISVPGPPGPPGPPGPPG----TMGASSGVRLWATRQAMLGQVHEVPEG 1461



 Score = 27.7 bits (60), Expect = 9.7
 Identities = 36/151 (23%), Positives = 48/151 (31%), Gaps = 21/151 (13%)

Query: 1    MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG 60
            +G G  G+  PP              P P  PP   P     +   + +PG     G +G
Sbjct: 1246 LGFGMRGMPGPPG------------PPGPPGPP-GTPVYDSNVFAESSRPGPPGLPGNQG 1292

Query: 61   GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGR-------GLAGRLQQV 113
               G +  +    P  PPG    +   L A     +     AG+       G  G     
Sbjct: 1293 P-PGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSS 1351

Query: 114  RPGAAGPRGRLPWVTGPRPAGSLPAAQSPPP 144
             PG  GP G   +   P P G     Q  PP
Sbjct: 1352 LPGPPGPPGPRGYPGIPGPKGESIRGQPGPP 1382


>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
           sapiens]
          Length = 1336

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 63/212 (29%), Positives = 78/212 (36%), Gaps = 42/212 (19%)

Query: 1   MGPGQHGVA--------PPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGG 52
           +GP Q G          P P GR   + +   P   P RP +N   G K       +PG 
Sbjct: 776 LGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPG-RPGRPGMNGLKGEKG------EPGD 828

Query: 53  A-LEAGTRG--GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGR 109
           A L  G RG  G  G      PP P  PPG+P+++      +F  S    R    GL G 
Sbjct: 829 ASLGFGMRGMPGPPG------PPGPPGPPGTPVYDS----NVFAESS---RPGPPGLPG- 874

Query: 110 LQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGR-----DAAGARVCGTQRGG 164
                 G  GP+G    V  P P G  P       AE  G      DA      G   GG
Sbjct: 875 ----NQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGG 930

Query: 165 CARAAEAPQPTGGRGCSRGSATASGVGGKAIK 196
               +  P P G  G  RG     G  G++I+
Sbjct: 931 GFFGSSLPGPPGPPG-PRGYPGIPGPKGESIR 961



 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 70/247 (28%), Positives = 84/247 (34%), Gaps = 74/247 (29%)

Query: 3   PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG-- 60
           PG  G+ P P         A    P P  PP   PPG      R  +PG   E G  G  
Sbjct: 363 PGPPGL-PCPVSPLGPAGPALQTVPGPQGPP--GPPGRDGTPGRDGEPGDPGEDGKPGDT 419

Query: 61  ---------------GREGHRRL--RQPPTPSAPPGSP----LHEGFLLIALFPSSQNRH 99
                          G +G   +  R PP P  PPG P     H+    I +        
Sbjct: 420 GPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDM-------- 471

Query: 100 RSAGRGLAGRLQQVR-----PGAAGPRGRLPWVTG------------PRPAG--SLPAAQ 140
              G G  G L+ +R     PG  GP G +P + G            P PAG   +P  +
Sbjct: 472 --EGSGFGGDLEALRGPRGFPGPPGPPG-VPGLPGEPGRFGVNSSDVPGPAGLPGVPGRE 528

Query: 141 SPP-------PAERPGRDAAGARVCGTQRGGCARAAE--------APQPTGGRGCSRGSA 185
            PP       P   PGR+    R    Q+G    A          AP P G RG S G A
Sbjct: 529 GPPGFPGLPGPPGPPGREGPPGRT--GQKGSLGEAGAPGHKGSKGAPGPAGARGES-GLA 585

Query: 186 TASGVGG 192
            A G  G
Sbjct: 586 GAPGPAG 592



 Score = 38.9 bits (89), Expect = 0.004
 Identities = 63/208 (30%), Positives = 74/208 (35%), Gaps = 41/208 (19%)

Query: 3    PGQHGVAPPPAGRERLQNK-AWSPAPAPARPPLNQ-PPGGKALSTRALQPGGA------- 53
            PG  G   PP       N  A S  P P   P NQ PPG K        PG         
Sbjct: 842  PGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDF 901

Query: 54   --LEAGTRG--------GREGHR-----------RLRQPPTPSAP---PGSPLHEGFLLI 89
              LEA  +G        G++G R            L  PP P  P   PG P  +G  + 
Sbjct: 902  LQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIR 961

Query: 90   ALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGP-RPAGSLPAAQSPP-PAER 147
               P         G G  GR  Q  PG  GP G  P   GP R   S+P    PP P   
Sbjct: 962  GQ-PGPPGPQGPPGIGYEGR--QGPPGPPGPPGP-PSFPGPHRQTISVPGPPGPPGPPGP 1017

Query: 148  PGRDAA--GARVCGTQRGGCARAAEAPQ 173
            PG   A  G R+  T++    +  E P+
Sbjct: 1018 PGTMGASSGVRLWATRQAMLGQVHEVPE 1045



 Score = 38.1 bits (87), Expect = 0.007
 Identities = 62/215 (28%), Positives = 73/215 (33%), Gaps = 47/215 (21%)

Query: 3   PGQHGV----APPPAGRERLQNKAWSPA----PAPARPPLNQPPGGKALSTRALQPGGAL 54
           PG+ GV     P PAG   +  +   P     P P  PP  + P G+     +L   GA 
Sbjct: 505 PGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAP 564

Query: 55  ----------EAGTRG-----GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRH 99
                      AG RG     G  G      PP P  PPG  L  GF        S    
Sbjct: 565 GHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGF---DDMEGSGGPF 621

Query: 100 RSAGRGLAGRLQQVRPGAAGPRGRLPWVTG-PRPAGSLPAAQSPPPAERPGRDAAGARVC 158
            S  R   G   Q  PG  G +G  P V G P   G + A   P     PGR+     + 
Sbjct: 622 WSTARSADG--PQGPPGLPGLKGD-PGVPGLPGAKGEVGADGVPGFPGLPGREG----IA 674

Query: 159 GTQRGGCARAAEAPQPTGGRGC--SRGSATASGVG 191
           G Q            P G RG    +G     GVG
Sbjct: 675 GPQ-----------GPKGDRGSRGEKGDPGKDGVG 698



 Score = 34.7 bits (78), Expect = 0.080
 Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 15/90 (16%)

Query: 38  PGGKALST---RALQPGGALEAGTRGGREGHRRLRQPPTPSAPPGSPLHEG--FLLIALF 92
           PG  ++ST       PGG ++ G   G++G   +  PP  + PPGSP   G   L   + 
Sbjct: 314 PGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVS 373

Query: 93  PSSQNRHRSAGRGLAGRLQQVRPGAAGPRG 122
           P           G AG   Q  PG  GP G
Sbjct: 374 P----------LGPAGPALQTVPGPQGPPG 393



 Score = 29.3 bits (64), Expect = 3.3
 Identities = 30/114 (26%), Positives = 39/114 (34%), Gaps = 5/114 (4%)

Query: 3    PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGR 62
            PG  G  P P G   +             PP  Q P G     R   PG     G     
Sbjct: 938  PGPPG-PPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFP 996

Query: 63   EGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPG 116
              HR+    P P  PPG P   G     +  SS  R  +  + + G++ +V  G
Sbjct: 997  GPHRQTISVPGPPGPPGPPGPPG----TMGASSGVRLWATRQAMLGQVHEVPEG 1046



 Score = 27.7 bits (60), Expect = 9.7
 Identities = 36/151 (23%), Positives = 48/151 (31%), Gaps = 21/151 (13%)

Query: 1   MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG 60
           +G G  G+  PP              P P  PP   P     +   + +PG     G +G
Sbjct: 831 LGFGMRGMPGPPG------------PPGPPGPP-GTPVYDSNVFAESSRPGPPGLPGNQG 877

Query: 61  GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGR-------GLAGRLQQV 113
              G +  +    P  PPG    +   L A     +     AG+       G  G     
Sbjct: 878 P-PGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSS 936

Query: 114 RPGAAGPRGRLPWVTGPRPAGSLPAAQSPPP 144
            PG  GP G   +   P P G     Q  PP
Sbjct: 937 LPGPPGPPGPRGYPGIPGPKGESIRGQPGPP 967


>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
            sapiens]
          Length = 1516

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 63/212 (29%), Positives = 78/212 (36%), Gaps = 42/212 (19%)

Query: 1    MGPGQHGVA--------PPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGG 52
            +GP Q G          P P GR   + +   P   P RP +N   G K       +PG 
Sbjct: 956  LGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPG-RPGRPGMNGLKGEKG------EPGD 1008

Query: 53   A-LEAGTRG--GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGR 109
            A L  G RG  G  G      PP P  PPG+P+++      +F  S    R    GL G 
Sbjct: 1009 ASLGFGMRGMPGPPG------PPGPPGPPGTPVYDS----NVFAESS---RPGPPGLPG- 1054

Query: 110  LQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGR-----DAAGARVCGTQRGG 164
                  G  GP+G    V  P P G  P       AE  G      DA      G   GG
Sbjct: 1055 ----NQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGG 1110

Query: 165  CARAAEAPQPTGGRGCSRGSATASGVGGKAIK 196
                +  P P G  G  RG     G  G++I+
Sbjct: 1111 GFFGSSLPGPPGPPG-PRGYPGIPGPKGESIR 1141



 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 70/247 (28%), Positives = 84/247 (34%), Gaps = 74/247 (29%)

Query: 3   PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG-- 60
           PG  G+ P P         A    P P  PP   PPG      R  +PG   E G  G  
Sbjct: 543 PGPPGL-PCPVSPLGPAGPALQTVPGPQGPP--GPPGRDGTPGRDGEPGDPGEDGKPGDT 599

Query: 61  ---------------GREGHRRL--RQPPTPSAPPGSP----LHEGFLLIALFPSSQNRH 99
                          G +G   +  R PP P  PPG P     H+    I +        
Sbjct: 600 GPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDM-------- 651

Query: 100 RSAGRGLAGRLQQVR-----PGAAGPRGRLPWVTG------------PRPAG--SLPAAQ 140
              G G  G L+ +R     PG  GP G +P + G            P PAG   +P  +
Sbjct: 652 --EGSGFGGDLEALRGPRGFPGPPGPPG-VPGLPGEPGRFGVNSSDVPGPAGLPGVPGRE 708

Query: 141 SPP-------PAERPGRDAAGARVCGTQRGGCARAAE--------APQPTGGRGCSRGSA 185
            PP       P   PGR+    R    Q+G    A          AP P G RG S G A
Sbjct: 709 GPPGFPGLPGPPGPPGREGPPGRT--GQKGSLGEAGAPGHKGSKGAPGPAGARGES-GLA 765

Query: 186 TASGVGG 192
            A G  G
Sbjct: 766 GAPGPAG 772



 Score = 38.9 bits (89), Expect = 0.004
 Identities = 63/208 (30%), Positives = 74/208 (35%), Gaps = 41/208 (19%)

Query: 3    PGQHGVAPPPAGRERLQNK-AWSPAPAPARPPLNQ-PPGGKALSTRALQPGGA------- 53
            PG  G   PP       N  A S  P P   P NQ PPG K        PG         
Sbjct: 1022 PGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDF 1081

Query: 54   --LEAGTRG--------GREGHR-----------RLRQPPTPSAP---PGSPLHEGFLLI 89
              LEA  +G        G++G R            L  PP P  P   PG P  +G  + 
Sbjct: 1082 LQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIR 1141

Query: 90   ALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGP-RPAGSLPAAQSPP-PAER 147
               P         G G  GR  Q  PG  GP G  P   GP R   S+P    PP P   
Sbjct: 1142 GQ-PGPPGPQGPPGIGYEGR--QGPPGPPGPPGP-PSFPGPHRQTISVPGPPGPPGPPGP 1197

Query: 148  PGRDAA--GARVCGTQRGGCARAAEAPQ 173
            PG   A  G R+  T++    +  E P+
Sbjct: 1198 PGTMGASSGVRLWATRQAMLGQVHEVPE 1225



 Score = 38.1 bits (87), Expect = 0.007
 Identities = 62/215 (28%), Positives = 73/215 (33%), Gaps = 47/215 (21%)

Query: 3   PGQHGV----APPPAGRERLQNKAWSPA----PAPARPPLNQPPGGKALSTRALQPGGAL 54
           PG+ GV     P PAG   +  +   P     P P  PP  + P G+     +L   GA 
Sbjct: 685 PGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAP 744

Query: 55  ----------EAGTRG-----GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRH 99
                      AG RG     G  G      PP P  PPG  L  GF        S    
Sbjct: 745 GHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGF---DDMEGSGGPF 801

Query: 100 RSAGRGLAGRLQQVRPGAAGPRGRLPWVTG-PRPAGSLPAAQSPPPAERPGRDAAGARVC 158
            S  R   G   Q  PG  G +G  P V G P   G + A   P     PGR+     + 
Sbjct: 802 WSTARSADG--PQGPPGLPGLKGD-PGVPGLPGAKGEVGADGVPGFPGLPGREG----IA 854

Query: 159 GTQRGGCARAAEAPQPTGGRGC--SRGSATASGVG 191
           G Q            P G RG    +G     GVG
Sbjct: 855 GPQ-----------GPKGDRGSRGEKGDPGKDGVG 878



 Score = 34.7 bits (78), Expect = 0.080
 Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 15/90 (16%)

Query: 38  PGGKALST---RALQPGGALEAGTRGGREGHRRLRQPPTPSAPPGSPLHEG--FLLIALF 92
           PG  ++ST       PGG ++ G   G++G   +  PP  + PPGSP   G   L   + 
Sbjct: 494 PGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVS 553

Query: 93  PSSQNRHRSAGRGLAGRLQQVRPGAAGPRG 122
           P           G AG   Q  PG  GP G
Sbjct: 554 P----------LGPAGPALQTVPGPQGPPG 573



 Score = 29.3 bits (64), Expect = 3.3
 Identities = 30/114 (26%), Positives = 39/114 (34%), Gaps = 5/114 (4%)

Query: 3    PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGR 62
            PG  G  P P G   +             PP  Q P G     R   PG     G     
Sbjct: 1118 PGPPG-PPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFP 1176

Query: 63   EGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPG 116
              HR+    P P  PPG P   G     +  SS  R  +  + + G++ +V  G
Sbjct: 1177 GPHRQTISVPGPPGPPGPPGPPG----TMGASSGVRLWATRQAMLGQVHEVPEG 1226



 Score = 27.7 bits (60), Expect = 9.7
 Identities = 36/151 (23%), Positives = 48/151 (31%), Gaps = 21/151 (13%)

Query: 1    MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG 60
            +G G  G+  PP              P P  PP   P     +   + +PG     G +G
Sbjct: 1011 LGFGMRGMPGPPG------------PPGPPGPP-GTPVYDSNVFAESSRPGPPGLPGNQG 1057

Query: 61   GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGR-------GLAGRLQQV 113
               G +  +    P  PPG    +   L A     +     AG+       G  G     
Sbjct: 1058 P-PGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSS 1116

Query: 114  RPGAAGPRGRLPWVTGPRPAGSLPAAQSPPP 144
             PG  GP G   +   P P G     Q  PP
Sbjct: 1117 LPGPPGPPGPRGYPGIPGPKGESIRGQPGPP 1147


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 69/257 (26%), Positives = 79/257 (30%), Gaps = 69/257 (26%)

Query: 10  PPPAGRER------------LQNKAWSPA-PAPARPPLNQPPGGKALSTRALQPGGALEA 56
           PPPAGR R               +   PA PAP    L  PP G A S   +    A+ A
Sbjct: 89  PPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAA 148

Query: 57  GTRGGREGHRRLRQP----------------PTPSAPPGSPLHEGFLLIALFPSSQ-NRH 99
           G      G  +   P                P P   PG P   G        ++  N H
Sbjct: 149 GPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSH 208

Query: 100 RSAG-------RGLAGRLQQVRPGAAGPRGRLPWVTGPR-------------PAGSLPAA 139
            +A         G A  L   +P A G   + P   G               PA + PAA
Sbjct: 209 HAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAA 268

Query: 140 QSPPP-------AERPGRDAAGARVC-------GTQRGGCARAAEAPQPTGGRGCSRGSA 185
             PPP       A  PG  A               Q GG A AA AP P  G     G A
Sbjct: 269 APPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAG-----GPA 323

Query: 186 TASGVGGKAIKKAQRIP 202
             SG  G     A   P
Sbjct: 324 GVSGQPGPGAAAAAPAP 340



 Score = 38.5 bits (88), Expect = 0.006
 Identities = 55/202 (27%), Positives = 67/202 (33%), Gaps = 60/202 (29%)

Query: 7   GVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHR 66
           G A PPA        A +PA   A PP   PP    L+     P G              
Sbjct: 245 GAAAPPAPAAPSPPAAPAPAAPAAAPP-PPPPAPATLARPPGHPAG-------------- 289

Query: 67  RLRQPPT--PSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRL 124
               PPT  P+ PP +    G                   G AG      P A GP G +
Sbjct: 290 ----PPTAAPAVPPPAAAQNG-------------------GSAGAAPAPAPAAGGPAG-V 325

Query: 125 PWVTGPRPAGSLPA----AQSP-------PPAER------PGRDAAGARVCGTQRGGCAR 167
               GP  A + PA    A+SP       PPA +      P   AA   +  T +G    
Sbjct: 326 SGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPS 385

Query: 168 AAEAPQPTGG--RGCSRGSATA 187
            A  P P  G   G  +G+A A
Sbjct: 386 PAAVPPPAPGTPTGLPKGAAGA 407


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
            sapiens]
          Length = 1487

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 64/209 (30%), Positives = 74/209 (35%), Gaps = 22/209 (10%)

Query: 3    PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG-- 60
            PG  G  P  AGR        +P P P  P  +   G K     +  PG A E G +G  
Sbjct: 893  PGATGF-PGAAGRVGPPGSNGNPGP-PGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPA 950

Query: 61   ---GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGR-GLAGRL-QQVRP 115
               G +G      P     PPG     G   I   P  +      G  G +G   +Q  P
Sbjct: 951  GPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAP 1010

Query: 116  GAAGPRGRLPWVTGPR----PAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEA 171
            GA+G RG  P   GP     PAG      SP     PGRD A          G   A  A
Sbjct: 1011 GASGDRGP-PGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGA 1069

Query: 172  PQPTG--------GRGCSRGSATASGVGG 192
            P P G        G+   RG A A G  G
Sbjct: 1070 PGPPGSPGPAGPTGKQGDRGEAGAQGPMG 1098



 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 66/218 (30%), Positives = 77/218 (35%), Gaps = 46/218 (21%)

Query: 3   PGQHGVAPPP-AGRERLQNKAWSPAPA---PARPPLNQPPGGKALSTRALQPGGALEAGT 58
           PGQ G+A P  A  ER  +    P  A   P RP     PG + L+ R   PG A   G 
Sbjct: 518 PGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGR---PGDAGPQGK 574

Query: 59  RG--GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG------------- 103
            G  G  G      PP P    G P   GF      P  +  +   G             
Sbjct: 575 VGPSGAPGEDGRPGPPGPQGARGQPGVMGF------PGPKGANGEPGKAGEKGLPGAPGL 628

Query: 104 RGLAGRLQQVR----PGAAGPRGRLPWVTGPRPAG--SLPAAQSPP-PAERPGRDAAGAR 156
           RGL G+  +      PG AGP G       P P+G   LP    PP    +PG       
Sbjct: 629 RGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGV--- 685

Query: 157 VCGTQRGGCARAAEAPQPTGGRGC--SRGSATASGVGG 192
                  G A A     P G RG    RGS  A G+ G
Sbjct: 686 ------PGEAGAPGLVGPRGERGFPGERGSPGAQGLQG 717



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 55/189 (29%), Positives = 62/189 (32%), Gaps = 40/189 (21%)

Query: 26  APAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLRQPPTPSAPPGSPLHEG 85
           A  PA PP  Q P G  L     + G A  AG +G R              P G+P  +G
Sbjct: 733 ASGPAGPPGAQGPPG--LQGMPGERGAAGIAGPKGDRGDVGE-------KGPEGAPGKDG 783

Query: 86  FLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQSP--- 142
                            GRGL G +    PG AG  G    V  P PAGS  A  +P   
Sbjct: 784 -----------------GRGLTGPIGP--PGPAGANGEKGEVGPPGPAGSAGARGAPGER 824

Query: 143 ----PP-----AERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGCSRGSATASGVGGK 193
               PP     A  PG D            G    A AP P G  G           G K
Sbjct: 825 GETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPK 884

Query: 194 AIKKAQRIP 202
             + AQ  P
Sbjct: 885 GARGAQGPP 893



 Score = 38.1 bits (87), Expect = 0.007
 Identities = 55/193 (28%), Positives = 72/193 (37%), Gaps = 26/193 (13%)

Query: 3   PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGR 62
           PG  G A   AG   ++ ++ SP    +  P+    G + L     + G A  AG RG  
Sbjct: 293 PGLDG-AKGEAGAPGVKGESGSPGENGSPGPM----GPRGLPGERGRTGPAGAAGARGN- 346

Query: 63  EGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG-RGLAGRLQQVRPGAAGPR 121
           +G      PP P  P G P          FP +      AG  G  G       GA GPR
Sbjct: 347 DGQPGPAGPPGPVGPAGGPG---------FPGAPGAKGEAGPTGARGP-----EGAQGPR 392

Query: 122 GRLPWVTGPRPAGSLPAAQSPPPAERPG-RDAAGA-RVCGTQRGGCARAAEAPQPTGGRG 179
           G       P PAG   A+ +P     PG + +AGA  + G       R    PQ   G  
Sbjct: 393 GEPGTPGSPGPAG---ASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPL 449

Query: 180 CSRGSATASGVGG 192
             +G     G+ G
Sbjct: 450 GPKGQTGEPGIAG 462



 Score = 34.7 bits (78), Expect = 0.080
 Identities = 61/232 (26%), Positives = 82/232 (35%), Gaps = 49/232 (21%)

Query: 3   PGQHGVAPPPA--GRERLQNKAWSP--APAPARPPLNQPPGGKALSTRALQPGGALEAGT 58
           PG  G +  P   G    +  A +P  A AP  P    PPG +  +T  L P G      
Sbjct: 401 PGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQG-ATGPLGPKGQTGEPG 459

Query: 59  RGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRP--- 115
             G +G +  +  P P+ P G+P           P+ +   R A RG  G +  + P   
Sbjct: 460 IAGFKGEQGPKGEPGPAGPQGAP----------GPAGEEGKRGA-RGEPGGVGPIGPPGE 508

Query: 116 -------------GAAGPRG----RLP-WVTGPRPAGSLPAAQSPPP-------AERPGR 150
                        G AGP+G    R P  + GP+ A   P     P          RPG 
Sbjct: 509 RGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGD 568

Query: 151 DAAGARVCGTQRGGCARAAEAPQPTGGRGCS-----RGSATASGVGGKAIKK 197
                +V  +   G       P P G RG        G   A+G  GKA +K
Sbjct: 569 AGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEK 620



 Score = 32.0 bits (71), Expect = 0.52
 Identities = 43/161 (26%), Positives = 55/161 (34%), Gaps = 25/161 (15%)

Query: 26   APAPARPPLNQPPGGKALSTRALQPGGALEAGTRG--GREGHRRLRQPPTPSAPPGSPLH 83
            +P PA P   Q   G+A +   + P G   AG RG  G +G R  +         G   H
Sbjct: 1075 SPGPAGPTGKQGDRGEAGAQGPMGPSG--PAGARGIQGPQGPRGDKGEAGEPGERGLKGH 1132

Query: 84   EGFLLIALFPS----SQNRHRSAGRGLAGRLQQVRP----------------GAAGPRGR 123
             GF  +   P     S ++  S   G +G      P                G  GPRGR
Sbjct: 1133 RGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGR 1192

Query: 124  LPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGG 164
                TGP      P    PP    PG D +     G +  G
Sbjct: 1193 -SGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKG 1232



 Score = 31.6 bits (70), Expect = 0.67
 Identities = 50/178 (28%), Positives = 62/178 (34%), Gaps = 21/178 (11%)

Query: 29  PARPPLNQPPGGKALSTRALQPGGALEA-GTRG--GREGHRRLRQPPTPSAPPGSPLHEG 85
           P  PP  Q P G+          G   A G RG  G  G      PP P  PPG P   G
Sbjct: 118 PKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGG 177

Query: 86  FLLIALFPSSQNRHRSAGRG-LAGRLQQVRP-------GAAGPRG--RLPWVTG-PRPAG 134
                +      +   A  G + G +  + P       GA GP+G    P   G P  +G
Sbjct: 178 NFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSG 237

Query: 135 SLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGCSRGSATASGVGG 192
            +     P P  +PG D          + G A     P P G RG   G+    GV G
Sbjct: 238 PMGPRGPPGPPGKPGDDGEAG------KPGKAGERGPPGPQGARGFP-GTPGLPGVKG 288


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
            sapiens]
          Length = 1418

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 64/209 (30%), Positives = 74/209 (35%), Gaps = 22/209 (10%)

Query: 3    PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG-- 60
            PG  G  P  AGR        +P P P  P  +   G K     +  PG A E G +G  
Sbjct: 824  PGATGF-PGAAGRVGPPGSNGNPGP-PGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPA 881

Query: 61   ---GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGR-GLAGRL-QQVRP 115
               G +G      P     PPG     G   I   P  +      G  G +G   +Q  P
Sbjct: 882  GPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAP 941

Query: 116  GAAGPRGRLPWVTGPR----PAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEA 171
            GA+G RG  P   GP     PAG      SP     PGRD A          G   A  A
Sbjct: 942  GASGDRGP-PGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGA 1000

Query: 172  PQPTG--------GRGCSRGSATASGVGG 192
            P P G        G+   RG A A G  G
Sbjct: 1001 PGPPGSPGPAGPTGKQGDRGEAGAQGPMG 1029



 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 66/218 (30%), Positives = 77/218 (35%), Gaps = 46/218 (21%)

Query: 3   PGQHGVAPPP-AGRERLQNKAWSPAPA---PARPPLNQPPGGKALSTRALQPGGALEAGT 58
           PGQ G+A P  A  ER  +    P  A   P RP     PG + L+ R   PG A   G 
Sbjct: 449 PGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGR---PGDAGPQGK 505

Query: 59  RG--GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG------------- 103
            G  G  G      PP P    G P   GF      P  +  +   G             
Sbjct: 506 VGPSGAPGEDGRPGPPGPQGARGQPGVMGF------PGPKGANGEPGKAGEKGLPGAPGL 559

Query: 104 RGLAGRLQQVR----PGAAGPRGRLPWVTGPRPAG--SLPAAQSPP-PAERPGRDAAGAR 156
           RGL G+  +      PG AGP G       P P+G   LP    PP    +PG       
Sbjct: 560 RGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGV--- 616

Query: 157 VCGTQRGGCARAAEAPQPTGGRGC--SRGSATASGVGG 192
                  G A A     P G RG    RGS  A G+ G
Sbjct: 617 ------PGEAGAPGLVGPRGERGFPGERGSPGAQGLQG 648



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 55/189 (29%), Positives = 62/189 (32%), Gaps = 40/189 (21%)

Query: 26  APAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLRQPPTPSAPPGSPLHEG 85
           A  PA PP  Q P G  L     + G A  AG +G R              P G+P  +G
Sbjct: 664 ASGPAGPPGAQGPPG--LQGMPGERGAAGIAGPKGDRGDVGE-------KGPEGAPGKDG 714

Query: 86  FLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQSP--- 142
                            GRGL G +    PG AG  G    V  P PAGS  A  +P   
Sbjct: 715 -----------------GRGLTGPIGP--PGPAGANGEKGEVGPPGPAGSAGARGAPGER 755

Query: 143 ----PP-----AERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGCSRGSATASGVGGK 193
               PP     A  PG D            G    A AP P G  G           G K
Sbjct: 756 GETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPK 815

Query: 194 AIKKAQRIP 202
             + AQ  P
Sbjct: 816 GARGAQGPP 824



 Score = 38.1 bits (87), Expect = 0.007
 Identities = 55/193 (28%), Positives = 72/193 (37%), Gaps = 26/193 (13%)

Query: 3   PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGR 62
           PG  G A   AG   ++ ++ SP    +  P+    G + L     + G A  AG RG  
Sbjct: 224 PGLDG-AKGEAGAPGVKGESGSPGENGSPGPM----GPRGLPGERGRTGPAGAAGARGN- 277

Query: 63  EGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG-RGLAGRLQQVRPGAAGPR 121
           +G      PP P  P G P          FP +      AG  G  G       GA GPR
Sbjct: 278 DGQPGPAGPPGPVGPAGGPG---------FPGAPGAKGEAGPTGARGP-----EGAQGPR 323

Query: 122 GRLPWVTGPRPAGSLPAAQSPPPAERPG-RDAAGA-RVCGTQRGGCARAAEAPQPTGGRG 179
           G       P PAG   A+ +P     PG + +AGA  + G       R    PQ   G  
Sbjct: 324 GEPGTPGSPGPAG---ASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPL 380

Query: 180 CSRGSATASGVGG 192
             +G     G+ G
Sbjct: 381 GPKGQTGEPGIAG 393



 Score = 34.7 bits (78), Expect = 0.080
 Identities = 61/232 (26%), Positives = 82/232 (35%), Gaps = 49/232 (21%)

Query: 3   PGQHGVAPPPA--GRERLQNKAWSP--APAPARPPLNQPPGGKALSTRALQPGGALEAGT 58
           PG  G +  P   G    +  A +P  A AP  P    PPG +  +T  L P G      
Sbjct: 332 PGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQG-ATGPLGPKGQTGEPG 390

Query: 59  RGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRP--- 115
             G +G +  +  P P+ P G+P           P+ +   R A RG  G +  + P   
Sbjct: 391 IAGFKGEQGPKGEPGPAGPQGAP----------GPAGEEGKRGA-RGEPGGVGPIGPPGE 439

Query: 116 -------------GAAGPRG----RLP-WVTGPRPAGSLPAAQSPPP-------AERPGR 150
                        G AGP+G    R P  + GP+ A   P     P          RPG 
Sbjct: 440 RGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGD 499

Query: 151 DAAGARVCGTQRGGCARAAEAPQPTGGRGCS-----RGSATASGVGGKAIKK 197
                +V  +   G       P P G RG        G   A+G  GKA +K
Sbjct: 500 AGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEK 551



 Score = 32.0 bits (71), Expect = 0.52
 Identities = 43/161 (26%), Positives = 55/161 (34%), Gaps = 25/161 (15%)

Query: 26   APAPARPPLNQPPGGKALSTRALQPGGALEAGTRG--GREGHRRLRQPPTPSAPPGSPLH 83
            +P PA P   Q   G+A +   + P G   AG RG  G +G R  +         G   H
Sbjct: 1006 SPGPAGPTGKQGDRGEAGAQGPMGPSG--PAGARGIQGPQGPRGDKGEAGEPGERGLKGH 1063

Query: 84   EGFLLIALFPS----SQNRHRSAGRGLAGRLQQVRP----------------GAAGPRGR 123
             GF  +   P     S ++  S   G +G      P                G  GPRGR
Sbjct: 1064 RGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGR 1123

Query: 124  LPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGG 164
                TGP      P    PP    PG D +     G +  G
Sbjct: 1124 -SGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKG 1163



 Score = 31.6 bits (70), Expect = 0.67
 Identities = 50/178 (28%), Positives = 62/178 (34%), Gaps = 21/178 (11%)

Query: 29  PARPPLNQPPGGKALSTRALQPGGALEA-GTRG--GREGHRRLRQPPTPSAPPGSPLHEG 85
           P  PP  Q P G+          G   A G RG  G  G      PP P  PPG P   G
Sbjct: 49  PKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGG 108

Query: 86  FLLIALFPSSQNRHRSAGRG-LAGRLQQVRP-------GAAGPRG--RLPWVTG-PRPAG 134
                +      +   A  G + G +  + P       GA GP+G    P   G P  +G
Sbjct: 109 NFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSG 168

Query: 135 SLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGCSRGSATASGVGG 192
            +     P P  +PG D          + G A     P P G RG   G+    GV G
Sbjct: 169 PMGPRGPPGPPGKPGDDGEAG------KPGKAGERGPPGPQGARGFP-GTPGLPGVKG 219


>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
           sapiens]
          Length = 309

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 40/139 (28%), Positives = 51/139 (36%), Gaps = 16/139 (11%)

Query: 10  PPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLR 69
           PPP G     N++  P P P +P    P GG        +PG       +GG +      
Sbjct: 165 PPPQGG----NQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQ---G 217

Query: 70  QPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTG 129
            PP P  P G P   G       P     H    +G   + +  +P    P GR     G
Sbjct: 218 PPPRPGKPEGPPSQGGNK-----PQGPPPHPGKPQGPPPQ-EGNKPQRPPPPGR---PQG 268

Query: 130 PRPAGSLPAAQSPPPAERP 148
           P P G  P    PPPA +P
Sbjct: 269 PPPPGGNPQQPLPPPAGKP 287



 Score = 45.1 bits (105), Expect = 6e-05
 Identities = 41/145 (28%), Positives = 49/145 (33%), Gaps = 25/145 (17%)

Query: 10  PPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLR 69
           PPP G     N++  P P P +P    P GG        +PG      ++GG +      
Sbjct: 186 PPPQGG----NQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQG--- 238

Query: 70  QPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTG 129
            PP P  P G P  EG        +   R    GR          P    P G  P    
Sbjct: 239 PPPHPGKPQGPPPQEG--------NKPQRPPPPGR----------PQGPPPPGGNPQQPL 280

Query: 130 PRPAGSLPAAQSPPPAERPGRDAAG 154
           P PAG       PP   RP R   G
Sbjct: 281 PPPAGKPQGPPPPPQGGRPHRPPQG 305



 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 51/184 (27%), Positives = 63/184 (34%), Gaps = 22/184 (11%)

Query: 2   GPGQHGVAPPPAGRERLQ-----NKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEA 56
           G  Q    PPP G+   +     N++  P P P +P    P GG        +PG     
Sbjct: 43  GGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGQ 102

Query: 57  GTRGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPG 116
             +GG +       PP P  P G P   G         SQ      G+   G   Q    
Sbjct: 103 PPQGGNQSQ---GPPPRPGKPEGPPPQGG-------NQSQGPPPRPGKP-EGPPPQGGNQ 151

Query: 117 AAGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGG---CARAAEAPQ 173
           + GP  R     GP P G    +Q PPP   PG+        G Q  G        E P 
Sbjct: 152 SQGPPPRPGKPEGPPPQGG-NQSQGPPP--HPGKPEGPPPQGGNQSQGPPPRPGKPEGPP 208

Query: 174 PTGG 177
           P GG
Sbjct: 209 PQGG 212



 Score = 40.8 bits (94), Expect = 0.001
 Identities = 44/155 (28%), Positives = 54/155 (34%), Gaps = 18/155 (11%)

Query: 10  PPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLR 69
           PPP G     N++  P P P +P    P GG        +PG       +GG +      
Sbjct: 81  PPPQGG----NQSQGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQ---G 133

Query: 70  QPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTG 129
            PP P  P G P   G         SQ      G+   G   Q    + GP        G
Sbjct: 134 PPPRPGKPEGPPPQGG-------NQSQGPPPRPGKP-EGPPPQGGNQSQGPPPHPGKPEG 185

Query: 130 PRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGG 164
           P P G    +Q PPP  RPG+        G Q  G
Sbjct: 186 PPPQGG-NQSQGPPP--RPGKPEGPPPQGGNQSQG 217



 Score = 39.3 bits (90), Expect = 0.003
 Identities = 47/170 (27%), Positives = 57/170 (33%), Gaps = 17/170 (10%)

Query: 11  PPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLRQ 70
           P   R +  N+     P P +P    P GG        +PG       +GG +       
Sbjct: 36  PEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQ---GP 92

Query: 71  PPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGP 130
           PP P  P G P   G         SQ      G+   G   Q    + GP  R     GP
Sbjct: 93  PPRPGKPEGQPPQGG-------NQSQGPPPRPGKP-EGPPPQGGNQSQGPPPRPGKPEGP 144

Query: 131 RPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGG---CARAAEAPQPTGG 177
            P G    +Q PPP  RPG+        G Q  G        E P P GG
Sbjct: 145 PPQGG-NQSQGPPP--RPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQGG 191



 Score = 37.0 bits (84), Expect = 0.016
 Identities = 44/157 (28%), Positives = 54/157 (34%), Gaps = 17/157 (10%)

Query: 24  SPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLRQPPTPSAPPGSPLH 83
           SP+    +P   +P GG         PG       +GG +       PP P  P G P  
Sbjct: 28  SPSVISGKPEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQ---GPPPRPGKPEGPPPQ 84

Query: 84  EGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQSPP 143
            G         SQ      G+   G+  Q    + GP  R     GP P G    +Q PP
Sbjct: 85  GG-------NQSQGPPPRPGKP-EGQPPQGGNQSQGPPPRPGKPEGPPPQGG-NQSQGPP 135

Query: 144 PAERPGRDAAGARVCGTQRGG---CARAAEAPQPTGG 177
           P  RPG+        G Q  G        E P P GG
Sbjct: 136 P--RPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGG 170


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 63/221 (28%), Positives = 73/221 (33%), Gaps = 46/221 (20%)

Query: 2   GPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG- 60
           GP     AP PAG          P  A   P  +  PGG  +      PGG    G  G 
Sbjct: 504 GPAGERGAPGPAG----------PRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGP 553

Query: 61  -GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGR-----GLAGRLQQVR 114
            G +G      PP PS P G P   G      FP  +    + G+     G  G   Q  
Sbjct: 554 PGSQGESGRPGPPGPSGPRGQPGVMG------FPGPKGNDGAPGKNGERGGPGGPGPQGP 607

Query: 115 P---GAAGPRGRLPWVTGP-------RPAG-----SLPAAQSPP-----PAERPGRDAAG 154
           P   G  GP+G  P  TGP        P G      LP    PP     P E   +  AG
Sbjct: 608 PGKNGETGPQGP-PGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAG 666

Query: 155 ARVCGTQRGGCARAAEAPQP--TGGRGCSRGSATASGVGGK 193
           A      +G      E   P   G  G   G+      GGK
Sbjct: 667 APGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGK 707



 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 65/227 (28%), Positives = 75/227 (33%), Gaps = 30/227 (13%)

Query: 3    PGQHGVAPPPAGRERLQNKAWSPAPA-----PARPPLNQPPGGKALSTRALQPGGALEAG 57
            PG +G  P P G      K   P PA     P  P ++ P G          PG     G
Sbjct: 884  PGSNG-NPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPG 942

Query: 58   TRG-----GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG-------RG 105
              G     G  G R L  PP    P GSP  +G    +  P +       G        G
Sbjct: 943  APGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPG 1002

Query: 106  LAGRL----QQVRPGAAGPRGR--LPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCG 159
            LAG      +   PG+ G  GR   P   G R     P A   P    P      A   G
Sbjct: 1003 LAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSG 1062

Query: 160  TQ-RGGCARAAEAPQPTGGRGC-----SRGSATASGVGGKAIKKAQR 200
             +   G A  A AP P G RG       RG    +G  G A  K  R
Sbjct: 1063 DRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHR 1109



 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 62/199 (31%), Positives = 74/199 (37%), Gaps = 30/199 (15%)

Query: 3   PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQ----PPGGKALSTRALQPGGALEAGT 58
           PGQ+G       R     K     P  A PP       PPG + +      PGG   AG 
Sbjct: 815 PGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGF 874

Query: 59  RGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGR-GLAGRLQQVRPGA 117
            G     R L  PP  +  PG P   G       P        AG  G  G      PG 
Sbjct: 875 PGA----RGLPGPPGSNGNPGPPGPSG------SPGKDGPPGPAGNTGAPG-----SPGV 919

Query: 118 AGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGRDA--AGAR-VCGTQRGGCARAAEAPQP 174
           +GP+G       P   GS P AQ PP A  P   A   GAR + G    G      +P P
Sbjct: 920 SGPKGD---AGQPGEKGS-PGAQGPPGAPGPLGIAGITGARGLAGPP--GMPGPRGSPGP 973

Query: 175 TGGRGCSRGSATASGVGGK 193
            G +G S G   A+G+ G+
Sbjct: 974 QGVKGES-GKPGANGLSGE 991



 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 53/192 (27%), Positives = 64/192 (33%), Gaps = 25/192 (13%)

Query: 3   PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGR 62
           PG++G    P G         +    P  PP    PGG    T    P G       GG 
Sbjct: 590 PGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGP 649

Query: 63  EGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRL-QQVRPGAAGPR 121
            G       P P    G+P   G                 G+G AG   ++  PG AG  
Sbjct: 650 PGENGKPGEPGPKGDAGAPGAPG-----------------GKGDAGAPGERGPPGLAGAP 692

Query: 122 GRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGCS 181
           G       P P G   AA  P P    G    G +    +RGG      +P P G +G  
Sbjct: 693 GLRGGAGPPGPEGGKGAAGPPGPPGAAG--TPGLQGMPGERGGLG----SPGPKGDKG-E 745

Query: 182 RGSATASGVGGK 193
            G   A GV GK
Sbjct: 746 PGGPGADGVPGK 757



 Score = 41.2 bits (95), Expect = 9e-04
 Identities = 61/205 (29%), Positives = 72/205 (35%), Gaps = 47/205 (22%)

Query: 3   PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGR 62
           PG +G AP   G    Q  A +  P P  P +N  PGGK     A  PG     G RG  
Sbjct: 359 PGSNG-APGQRGEPGPQGHAGAQGP-PGPPGINGSPGGKGEMGPAGIPGAPGLMGARG-- 414

Query: 63  EGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRL-QQVRPGAAGPR 121
                   PP P+   G+P   G                 G G  G+   +  PG  G R
Sbjct: 415 --------PPGPAGANGAPGLRG-----------------GAGEPGKNGAKGEPGPRGER 449

Query: 122 GR--LPWVTGPRPAGSLPAAQSPPPAE-RPGRDAAGARVCGTQRG-----------GCAR 167
           G   +P V G +       +   P A   PG  AAG R     RG           G A 
Sbjct: 450 GEAGIPGVPGAKGEDGKDGSPGEPGANGLPG--AAGERGAPGFRGPAGPNGIPGEKGPAG 507

Query: 168 AAEAPQPTGGRGCSRGSATASGVGG 192
              AP P G RG + G     GV G
Sbjct: 508 ERGAPGPAGPRGAA-GEPGRDGVPG 531



 Score = 40.0 bits (92), Expect = 0.002
 Identities = 66/197 (33%), Positives = 74/197 (37%), Gaps = 27/197 (13%)

Query: 3   PGQHGVAPPPA--GRERLQNKAWSPAPA-PARPPLNQPPGGKALSTRALQPGGALEAGTR 59
           PG  G +  P   G    Q     P  A P+ PP   PPG    S  A + G   E+G R
Sbjct: 182 PGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPP--GPPGAIGPSGPAGKDG---ESG-R 235

Query: 60  GGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAG 119
            GR G R L  PP    P G P          FP  +      GR    + +   PG  G
Sbjct: 236 PGRPGERGLPGPPGIKGPAGIP---------GFPGMKGHRGFDGRN-GEKGETGAPGLKG 285

Query: 120 PRGRLPWVTG-PRPAGSLPAAQSPPPAERPG-RDAAGARVCGTQRGGCARAAEAPQPTGG 177
             G LP   G P P G   A   P    RPG   AAGAR     RG   +    P P G 
Sbjct: 286 ENG-LPGENGAPGPMGPRGA---PGERGRPGLPGAAGARGNDGARGSDGQPG-PPGPPGT 340

Query: 178 RGCSRGSATASGVGGKA 194
            G   GS  A G  G A
Sbjct: 341 AGFP-GSPGAKGEVGPA 356



 Score = 36.6 bits (83), Expect = 0.021
 Identities = 62/244 (25%), Positives = 75/244 (30%), Gaps = 44/244 (18%)

Query: 2   GPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG- 60
           GPG       P G + LQ    +  P P        PG K  +     PGG  +AG  G 
Sbjct: 624 GPGGDKGDTGPPGPQGLQGLPGTGGP-PGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGE 682

Query: 61  -------GREGHRRLRQPPTP------SAPPGSPLHEGFLLIALFPSSQNRHRSAG-RGL 106
                  G  G R    PP P      + PPG P   G   +   P  +    S G +G 
Sbjct: 683 RGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGD 742

Query: 107 AGRL----QQVRPGAAGPRG-----------------------RLPWVTGPRPAGSLPAA 139
            G          PG  GPRG                        LP + GPR +      
Sbjct: 743 KGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGE 802

Query: 140 QSPP-PAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGCSRGSATASGVGGKAIKKA 198
             PP PA  PG         G    G         P G  G   GS  A   G + +K  
Sbjct: 803 TGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGE 862

Query: 199 QRIP 202
           +  P
Sbjct: 863 RGSP 866



 Score = 36.6 bits (83), Expect = 0.021
 Identities = 59/221 (26%), Positives = 72/221 (32%), Gaps = 50/221 (22%)

Query: 3    PGQHGVA-----PPPAGRERLQNKAWSPAP-----APARPPLNQPPGGKALSTRALQPGG 52
            PG +G++     P P G   L   A  P       +   P  +  PGGK        PG 
Sbjct: 983  PGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGA 1042

Query: 53   ALEAGTRG--------GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG- 103
                G  G        G+ G R    P  P+  PG     G       P  Q      G 
Sbjct: 1043 PGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGA------PGPQGPRGDKGE 1096

Query: 104  ---RGLAGRL-------QQVRPGAAGPRGRLPWVTGPRPAGSL-PAAQSPPPAERPGRDA 152
               RG AG             PG+ GP G+   +  P PAG   P   S P    PG+D 
Sbjct: 1097 TGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGP----PGKDG 1152

Query: 153  AGARVCGTQRGGCARAAEAPQPTGGRGCSRGSATASGVGGK 193
                       G       P P G RG  RGS  + G  G+
Sbjct: 1153 T---------SGHPGPIGPPGPRGNRG-ERGSEGSPGHPGQ 1183



 Score = 36.6 bits (83), Expect = 0.021
 Identities = 31/83 (37%), Positives = 35/83 (42%), Gaps = 8/83 (9%)

Query: 3    PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQ--PPGGKALSTRALQPGGALEAGTRG 60
            PG  G +P PAG+   Q    SP PA  R P+    PPG    S      G     G RG
Sbjct: 1115 PGAPG-SPGPAGQ---QGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRG 1170

Query: 61   --GREGHRRLRQPPTPSAPPGSP 81
              G EG       P P  PPG+P
Sbjct: 1171 ERGSEGSPGHPGQPGPPGPPGAP 1193



 Score = 35.0 bits (79), Expect = 0.061
 Identities = 48/192 (25%), Positives = 65/192 (33%), Gaps = 27/192 (14%)

Query: 3   PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG-- 60
           PG+ G+  PP  +         PA  P  P +    G +    R  + G   E G  G  
Sbjct: 239 PGERGLPGPPGIK--------GPAGIPGFPGMK---GHRGFDGRNGEKG---ETGAPGLK 284

Query: 61  GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP 120
           G  G       P P  P G+P   G     L  ++  R     RG  G+     PG  GP
Sbjct: 285 GENGLPGENGAPGPMGPRGAPGERG--RPGLPGAAGARGNDGARGSDGQ-----PGPPGP 337

Query: 121 RGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGC 180
            G   +   P   G +  A SP     PG+        G Q    A+    P    G   
Sbjct: 338 PGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEP----GPQGHAGAQGPPGPPGINGSPG 393

Query: 181 SRGSATASGVGG 192
            +G    +G+ G
Sbjct: 394 GKGEMGPAGIPG 405



 Score = 32.7 bits (73), Expect = 0.30
 Identities = 39/148 (26%), Positives = 48/148 (32%), Gaps = 25/148 (16%)

Query: 60  GGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAG 119
           GG  G+     PP P  PPG+  H G       P S       G           PG AG
Sbjct: 167 GGLAGYPGPAGPPGPPGPPGTSGHPG------SPGSPGYQGPPG----------EPGQAG 210

Query: 120 PRGRLPWVTGPRPAGSL-PAAQSPPPAE--RPGRDAAGARVCGTQRGGCARAAEAPQPTG 176
           P G       P P G++ P+  +    E  RPGR             G A     P   G
Sbjct: 211 PSG------PPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKG 264

Query: 177 GRGCSRGSATASGVGGKAIKKAQRIPAE 204
            RG    +      G   +K    +P E
Sbjct: 265 HRGFDGRNGEKGETGAPGLKGENGLPGE 292



 Score = 32.0 bits (71), Expect = 0.52
 Identities = 54/187 (28%), Positives = 64/187 (34%), Gaps = 40/187 (21%)

Query: 25  PAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG--GREGHRRLRQPPTPSAP--PGS 80
           P  AP RPP  Q P G         P G  + G  G  GR G      P  P  P  PGS
Sbjct: 91  PPTAPTRPPNGQGPQG---------PKG--DPGPPGIPGRNG-----DPGIPGQPGSPGS 134

Query: 81  PLHEGFL---------LIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRG--RLPWVTG 129
           P   G               + S   +   A  GLAG      PG AGP G    P  +G
Sbjct: 135 PGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAG-----YPGPAGPPGPPGPPGTSG 189

Query: 130 PRPAGSLPAAQSPP--PAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGCSRGSATA 187
              +   P  Q PP  P +       G        G   +  E+ +P  GR   RG    
Sbjct: 190 HPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRP--GRPGERGLPGP 247

Query: 188 SGVGGKA 194
            G+ G A
Sbjct: 248 PGIKGPA 254


>gi|19924099 synapsin I isoform Ia [Homo sapiens]
          Length = 705

 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 53/200 (26%), Positives = 70/200 (35%), Gaps = 29/200 (14%)

Query: 2   GPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGG 61
           G G HG  P             SP   P     +Q P G     R    GG  + G    
Sbjct: 429 GRGSHGQTP-------------SPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQ 475

Query: 62  REGHRRLRQPPTP--------SAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQV 113
           R+G    ++PP            P GSPL +   L +   + Q     A     G+ +Q 
Sbjct: 476 RQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQ--RLPSPTSAPQQPASQAAPPTQGQGRQS 533

Query: 114 RPGAAGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAG---ARVCGTQRGGCARAAE 170
           RP A GP    P    P PA   P  Q+ PP        +G    +  G   GG  R   
Sbjct: 534 RPVAGGPGA--PPAARP-PASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGP 590

Query: 171 APQPTGGRGCSRGSATASGV 190
             +P G  G +R ++ A  V
Sbjct: 591 PQKPPGPAGPTRQASQAGPV 610



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 40/143 (27%), Positives = 51/143 (35%), Gaps = 23/143 (16%)

Query: 9   APPPAGRERLQNK-AWSP-APAPARPPLNQPP---GGKALSTRALQPGGALEAGTRGGRE 63
           APP  G+ R     A  P AP  ARPP +  P    G   +TR     G       G   
Sbjct: 523 APPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPP 582

Query: 64  GHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGR 123
           G ++ + PP     P  P  +            ++     R      QQ RP   GP GR
Sbjct: 583 GGQQRQGPPQKPPGPAGPTRQA-----------SQAGPVPRTGPPTTQQPRPSGPGPAGR 631

Query: 124 LPWVTGPRP-AGSLPAAQSPPPA 145
                 P+P     P+   PPPA
Sbjct: 632 ------PKPQLAQKPSQDVPPPA 648



 Score = 28.9 bits (63), Expect = 4.4
 Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 15/69 (21%)

Query: 93  PSSQNRHRSAGRGLAGRLQQVRPGA-----------AGP--RGRLPWVTGPRPAGSLPAA 139
           P  + R  S GRG  G  Q   PGA           AGP  + R P   GP   G  P  
Sbjct: 419 PRQRQRDASPGRGSHG--QTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQR 476

Query: 140 QSPPPAERP 148
           Q PP  +RP
Sbjct: 477 QGPPLQQRP 485


>gi|19924097 synapsin I isoform Ib [Homo sapiens]
          Length = 669

 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 53/200 (26%), Positives = 70/200 (35%), Gaps = 29/200 (14%)

Query: 2   GPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGG 61
           G G HG  P             SP   P     +Q P G     R    GG  + G    
Sbjct: 429 GRGSHGQTP-------------SPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQ 475

Query: 62  REGHRRLRQPPTP--------SAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQV 113
           R+G    ++PP            P GSPL +   L +   + Q     A     G+ +Q 
Sbjct: 476 RQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQ--RLPSPTSAPQQPASQAAPPTQGQGRQS 533

Query: 114 RPGAAGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAG---ARVCGTQRGGCARAAE 170
           RP A GP    P    P PA   P  Q+ PP        +G    +  G   GG  R   
Sbjct: 534 RPVAGGPGA--PPAARP-PASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGP 590

Query: 171 APQPTGGRGCSRGSATASGV 190
             +P G  G +R ++ A  V
Sbjct: 591 PQKPPGPAGPTRQASQAGPV 610



 Score = 40.4 bits (93), Expect = 0.001
 Identities = 38/144 (26%), Positives = 51/144 (35%), Gaps = 24/144 (16%)

Query: 9   APPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRL 68
           APP  G+ R        A  P  PP  +PP   +   +A  P    +    G        
Sbjct: 523 APPTQGQGRQSRPV---AGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAP----- 574

Query: 69  RQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVT 128
             P    APPG    +G       P  +        G AG  +Q       PR   P   
Sbjct: 575 --PKASGAPPGGQQRQG-------PPQKPP------GPAGPTRQASQAGPVPRTGPPTTQ 619

Query: 129 GPRPAGSLPAAQSPPP-AERPGRD 151
            PRP+G  PA +  P  A++P +D
Sbjct: 620 QPRPSGPGPAGRPKPQLAQKPSQD 643



 Score = 28.9 bits (63), Expect = 4.4
 Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 15/69 (21%)

Query: 93  PSSQNRHRSAGRGLAGRLQQVRPGA-----------AGP--RGRLPWVTGPRPAGSLPAA 139
           P  + R  S GRG  G  Q   PGA           AGP  + R P   GP   G  P  
Sbjct: 419 PRQRQRDASPGRGSHG--QTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQR 476

Query: 140 QSPPPAERP 148
           Q PP  +RP
Sbjct: 477 QGPPLQQRP 485


>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
          Length = 1712

 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 66/213 (30%), Positives = 76/213 (35%), Gaps = 32/213 (15%)

Query: 3   PGQHGVAPPPAGRERLQNKAWSPAPA--PARPPLNQPPGGKALS---------TRALQPG 51
           PG+ G  PP  G   L+ +   P  A  P  P    PPG               RA+  G
Sbjct: 615 PGEMG--PPGLGLPGLKGQRGFPGDAGLPGPPGFLGPPGPAGTPGQIDCDTDVKRAV--G 670

Query: 52  G----ALEAGTRGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGR-GL 106
           G    A++ G  GG +G   L  PP P+   G     GF      P  +     AGR G 
Sbjct: 671 GDRQEAIQPGCIGGPKGLPGLPGPPGPTGAKGLRGIPGFAGADGGPGPRGLPGDAGREGF 730

Query: 107 AGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCA 166
            G      PG  GPRG    V  P P GS      P P   PG       V G Q G   
Sbjct: 731 PGP-----PGFIGPRGSKGAVGLPGPDGSPGPIGLPGPDGPPGERGLPGEVLGAQPGPRG 785

Query: 167 RAAEAPQP-----TGGRGCS--RGSATASGVGG 192
            A    QP      G RG    RGS    G+ G
Sbjct: 786 DAGVPGQPGLKGLPGDRGPPGFRGSQGMPGMPG 818



 Score = 35.4 bits (80), Expect = 0.047
 Identities = 51/195 (26%), Positives = 68/195 (34%), Gaps = 10/195 (5%)

Query: 3    PGQHGVAPPPAGRERLQNKAWSPAPA--PARPPLNQPPGGKALSTRALQPGGALEAGTRG 60
            PG+    P P G    +    +P     P  P L   PG    S  +  PG   + G  G
Sbjct: 1231 PGEANTLPGPVGVPGQKGDQGAPGERGPPGSPGLQGFPGITPPSNISGAPG---DKGAPG 1287

Query: 61   --GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG-RGLAGRLQQVRPGA 117
              G +G+R    PP  +A PGS    G       P ++     +G +G  G      PG 
Sbjct: 1288 IFGLKGYRGPPGPPGSAALPGSKGDTGNPGAPGTPGTKGWAGDSGPQGRPGVFGL--PGE 1345

Query: 118  AGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGG 177
             GPRG   ++    P G++       P   PG   A   V      G  +       T G
Sbjct: 1346 KGPRGEQGFMGNTGPTGAVGDRGPKGPKGDPGFPGAPGTVGAPGIAGIPQKIAVQPGTVG 1405

Query: 178  RGCSRGSATASGVGG 192
                RG   A G  G
Sbjct: 1406 PQGRRGPPGAPGEMG 1420



 Score = 34.3 bits (77), Expect = 0.10
 Identities = 46/152 (30%), Positives = 53/152 (34%), Gaps = 30/152 (19%)

Query: 60  GGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAG 119
           GG  G    R PP P   PG P  +GF    LF     + R+   GL G      PGA G
Sbjct: 422 GGPPGPDGKRGPPGPPGLPGPPGPDGF----LFGLKGAKGRAGFPGLPG-----SPGARG 472

Query: 120 PR------GRLPWVTGPRPAGSLPAAQSPPPAE----RPGRDAAGARVCGTQRG------ 163
           P+      G      G      LP    P         PGR   G R    Q G      
Sbjct: 473 PKGWKGDAGECRCTEGDEAIKGLPGLPGPKGFAGINGEPGR--KGDRGDPGQHGLPGFPG 530

Query: 164 --GCARAAEAPQPTGGRGCSRGSATASGVGGK 193
             G      AP P G +G SR + T  G  G+
Sbjct: 531 LKGVPGNIGAPGPKGAKGDSR-TITTKGERGQ 561


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 45.1 bits (105), Expect = 6e-05
 Identities = 48/173 (27%), Positives = 62/173 (35%), Gaps = 22/173 (12%)

Query: 25  PAPAPARPPLNQPPGG---KALSTRALQPGGALEAGTRGGREGHRRLRQPPTPSAPPGSP 81
           P   P  P  N  PG    + L     +PG    AG RG  +G      PP P+ P G P
Sbjct: 285 PKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGN-DGATGAAGPPGPTGPAGPP 343

Query: 82  LHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQS 141
                     FP +      AG        Q   G+ GP+G       P PAG+   A +
Sbjct: 344 ---------GFPGAVGAKGEAG-------PQGPRGSEGPQGVRGEPGPPGPAGAAGPAGN 387

Query: 142 PPPAERPGRDAAGAR--VCGTQRGGCARAAEAPQPTGGRGCSRGSATASGVGG 192
           P    +PG   A     + G      AR    PQ  GG    +G++   G  G
Sbjct: 388 PGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPG 440



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 60/216 (27%), Positives = 75/216 (34%), Gaps = 32/216 (14%)

Query: 3   PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQ-----PPGGKALSTRALQPGGALEAG 57
           PG  G  P   G       A +P    AR P        PPG K  S     PG   + G
Sbjct: 388 PGADG-QPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTG 446

Query: 58  TRG--------------GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG 103
            +G              G EG R  R  P P+  PG P   G      FP +     +  
Sbjct: 447 AKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADG--VAGP 504

Query: 104 RGLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRG 163
           +G AG  ++  PG AGP+G  P   G      LP A+    +  PG      +       
Sbjct: 505 KGPAG--ERGSPGPAGPKGS-PGEAGRPGEAGLPGAKGLTGS--PGSPGPDGKTGPPGPA 559

Query: 164 GCARAAEAPQPTGGRGCS-----RGSATASGVGGKA 194
           G       P P G RG +      G   A+G  GKA
Sbjct: 560 GQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKA 595



 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 66/234 (28%), Positives = 81/234 (34%), Gaps = 52/234 (22%)

Query: 3   PGQHGVAPPPAGRERLQNKAWSPAPA--PARPPLNQPPGGKALST---------RALQPG 51
           PG  G+   P G      K   P PA    RP    PPG +  +           A +PG
Sbjct: 535 PGAKGLTGSP-GSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPG 593

Query: 52  GALEAGTRG--------GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG 103
            A E G  G        G++G    + PP P+ P G    +G    A  P  Q     AG
Sbjct: 594 KAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQG---PAGSPGFQGLPGPAG 650

Query: 104 ----------RGLAGRLQQVRP-GAAGPRG--------RLPWVTGPRPAGSLPA-----A 139
                     +G+ G L    P GA G RG          P   GPR A   P       
Sbjct: 651 PPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKG 710

Query: 140 QSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGCSRGSATASGVGGK 193
            +  P     + A G +    +RG    AA  P P G RG   G   A G  GK
Sbjct: 711 DAGAPGAPGSQGAPGLQGMPGERG----AAGLPGPKGDRG-DAGPKGADGSPGK 759



 Score = 41.2 bits (95), Expect = 9e-04
 Identities = 53/197 (26%), Positives = 64/197 (32%), Gaps = 31/197 (15%)

Query: 3   PGQHGVAPP-----PAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAG 57
           PG  G + P     P G          P P P       PPG         QPG   E G
Sbjct: 778 PGDKGESGPSGPAGPTGARGAPGDRGEPGP-PGPAGFAGPPGADG------QPGAKGEPG 830

Query: 58  TRGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGA 117
             G +        PP P+ P G P   G +     P ++    SAG           PGA
Sbjct: 831 DAGAKGD----AGPPGPAGPAGPP---GPIGNVGAPGAKGARGSAGP----------PGA 873

Query: 118 AGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGG 177
            G  G    V  P P+G+      P PA + G            R G       P P G 
Sbjct: 874 TGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGE 933

Query: 178 RGC--SRGSATASGVGG 192
           +G   + G A A G  G
Sbjct: 934 KGSPGADGPAGAPGTPG 950



 Score = 40.4 bits (93), Expect = 0.001
 Identities = 69/227 (30%), Positives = 79/227 (34%), Gaps = 51/227 (22%)

Query: 3    PGQHGVAPPP-----AGRERLQNKAWSPAPA----PARPPLNQPPGGKALSTRALQPGGA 53
            PG  G A PP     AG+E  +       PA       PP    P G+  S  A  P GA
Sbjct: 886  PGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGA 945

Query: 54   LE-------AGTRG--GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGR 104
                     AG RG  G  G R  R  P    P G P  +G       PS      S  R
Sbjct: 946  PGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQG-------PSG----ASGER 994

Query: 105  GLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAA-GARVCGTQRG 163
            G  G +    PG AGP G       P   GS            PGRD + GA+    + G
Sbjct: 995  GPPGPMGP--PGLAGPPGESGREGAPGAEGS------------PGRDGSPGAKGDRGETG 1040

Query: 164  -----GCARAAEAPQPTG--GRGCSRGSATASGVGGKAIKKAQRIPA 203
                 G   A  AP P G  G+   RG    +G  G       R PA
Sbjct: 1041 PAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPA 1087



 Score = 38.5 bits (88), Expect = 0.006
 Identities = 49/161 (30%), Positives = 60/161 (37%), Gaps = 22/161 (13%)

Query: 3    PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGR 62
            PG  G AP P G            PA    P+  P G +  +      G   E G +G R
Sbjct: 1048 PGAPG-APGPVGPAGKSGDRGETGPAGPAGPVG-PVGARGPAGPQGPRGDKGETGEQGDR 1105

Query: 63   --EGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG-------RGLAGRLQQV 113
              +GHR       P  PPGSP  +G    +     +    SAG        GL G +   
Sbjct: 1106 GIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPI--- 1162

Query: 114  RPGAAGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAG 154
              G  GPRGR    TG   AG +     P P   PG  +AG
Sbjct: 1163 --GPPGPRGR----TG--DAGPVGPPGPPGPPGPPGPPSAG 1195



 Score = 37.0 bits (84), Expect = 0.016
 Identities = 60/201 (29%), Positives = 72/201 (35%), Gaps = 36/201 (17%)

Query: 3    PGQHGVA-----PPPAGRERLQNKAWSPA----PAPARPP-LNQPPGGKALSTRALQPGG 52
            PGQ G       P P+G    Q  + +      P P  PP L  PPG    S R   PG 
Sbjct: 964  PGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGE---SGREGAPGA 1020

Query: 53   ALEAGTRGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQ 112
                G R G  G +  R    P+ PPG+P   G    A  P      +S  RG       
Sbjct: 1021 EGSPG-RDGSPGAKGDRGETGPAGPPGAPGAPG----APGPVGP-AGKSGDRG------- 1067

Query: 113  VRPGAAGPRGRLPWVTGPRPAGSL-PAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEA 171
               G AGP G +  V    PAG   P        E+  R   G R       G +     
Sbjct: 1068 -ETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHR-------GFSGLQGP 1119

Query: 172  PQPTGGRGCSRGSATASGVGG 192
            P P G  G  +G + ASG  G
Sbjct: 1120 PGPPGSPG-EQGPSGASGPAG 1139



 Score = 33.5 bits (75), Expect = 0.18
 Identities = 45/155 (29%), Positives = 52/155 (33%), Gaps = 22/155 (14%)

Query: 50  PGGALEAGTRGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHR--------- 100
           P G      R G  G   L  PP P  PPG P   G     L      +           
Sbjct: 122 PRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPM 181

Query: 101 --SAGRGLAGRLQQVRPGAAGPRG-RLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARV 157
             S  RGL G      PGA GP+G + P      P  S P     PP   PG++      
Sbjct: 182 GPSGPRGLPG-----PPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGP-PGKNGDDGEA 235

Query: 158 CGTQRGGCARAAEAPQPTGGRGCSRGSATASGVGG 192
               R G       P P G RG   G+A   G+ G
Sbjct: 236 GKPGRPG---ERGPPGPQGARGLP-GTAGLPGMKG 266


>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
          Length = 416

 Score = 45.1 bits (105), Expect = 6e-05
 Identities = 48/172 (27%), Positives = 61/172 (35%), Gaps = 25/172 (14%)

Query: 10  PPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLR 69
           PPP G     NK+ S    P +P    P GG         PG       +GG +     +
Sbjct: 162 PPPQG----DNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKP----Q 213

Query: 70  QPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRP-GAAGPRGRLP--- 125
            PP P  P G P           P   N+ +SA R   G+ Q   P G   P+G  P   
Sbjct: 214 GPPPPGKPQGPP-----------PQGDNKSQSA-RSPPGKPQGPPPQGGNQPQGPPPPPG 261

Query: 126 WVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGG 177
              GP P G       PPP +  G    G     + R    +  + P P GG
Sbjct: 262 KPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGK-PQGPPPQGG 312



 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 48/189 (25%), Positives = 62/189 (32%), Gaps = 40/189 (21%)

Query: 10  PPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGR------- 62
           PPP G  + Q       P P   P   PP G    +    PG       +GG        
Sbjct: 81  PPPQGGNKPQG------PPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPP 134

Query: 63  ----------EGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQ 112
                     +G  + + PP P  P G P           P   N+ RS+ R   G+ Q 
Sbjct: 135 PPGKPQGPPPQGGNKPQGPPPPGKPQGPP-----------PQGDNKSRSS-RSPPGKPQG 182

Query: 113 VRP-GAAGPRGRLP---WVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARA 168
             P G   P+G  P      GP P G       PPP +  G    G     + R    + 
Sbjct: 183 PPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGK- 241

Query: 169 AEAPQPTGG 177
            + P P GG
Sbjct: 242 PQGPPPQGG 250



 Score = 38.5 bits (88), Expect = 0.006
 Identities = 45/173 (26%), Positives = 56/173 (32%), Gaps = 27/173 (15%)

Query: 9   APPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRL 68
           APP  G     NK   P   P +P    P GG         PG       +GG     + 
Sbjct: 39  APPQGG-----NKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGG----NKP 89

Query: 69  RQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRP-GAAGPRGRLP-- 125
           + PP P  P G             P  Q     + R   G+ Q   P G   P+G  P  
Sbjct: 90  QGPPPPGKPQG-------------PPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPP 136

Query: 126 -WVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGG 177
               GP P G       PPP +  G    G     + R    +  + P P GG
Sbjct: 137 GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGK-PQGPPPQGG 188



 Score = 38.5 bits (88), Expect = 0.006
 Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 13/143 (9%)

Query: 10  PPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLR 69
           PPP G     NK   P P P +P    P GG    +    PG       +GG +      
Sbjct: 266 PPPQGG----NKPQGPPP-PGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQ---G 317

Query: 70  QPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPG-AAGP---RGRLP 125
            PP P  P G P   G       P  + +      G   R  +  PG   GP    G  P
Sbjct: 318 PPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNP 377

Query: 126 WVTGPRPAGSLPAAQSPPPAERP 148
               P PAG  P     PPA +P
Sbjct: 378 -QGPPPPAGGNPQQPQAPPAGQP 399



 Score = 37.7 bits (86), Expect = 0.009
 Identities = 47/188 (25%), Positives = 61/188 (32%), Gaps = 38/188 (20%)

Query: 10  PPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGR------- 62
           PPP G     NK   P P P +P    P G     +    PG       +GG        
Sbjct: 204 PPPQGG----NKPQGPPP-PGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPP 258

Query: 63  ----------EGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQ 112
                     +G  + + PP P  P G P           P   ++ RS+ R   G+ Q 
Sbjct: 259 PPGKPQGPPPQGGNKPQGPPPPGKPQGPP-----------PQGGSKSRSS-RSPPGKPQG 306

Query: 113 VRP-GAAGPRGRLP---WVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARA 168
             P G   P+G  P      GP P G       PPP +  G    G     + R    + 
Sbjct: 307 PPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKP 366

Query: 169 AEAPQPTG 176
              PQ  G
Sbjct: 367 QGPPQQEG 374



 Score = 36.2 bits (82), Expect = 0.027
 Identities = 41/144 (28%), Positives = 47/144 (32%), Gaps = 19/144 (13%)

Query: 10  PPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLR 69
           PPP G  + ++   SP   P  PP   P GG         PG       +GG +     +
Sbjct: 286 PPPQGGSKSRSSR-SPPGKPQGPP---PQGGNQPQGPPPPPGKPQGPPPQGGNKP----Q 337

Query: 70  QPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP---RGRLPW 126
            PP P  P G P   G        S     RS      G  QQ      GP    G  P 
Sbjct: 338 GPPPPGKPQGPPPQGG--------SKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQ 389

Query: 127 VTGPRPAGSLPAAQSPPPAERPGR 150
                PAG       PP   RP R
Sbjct: 390 QPQAPPAGQPQGPPRPPQGGRPSR 413


>gi|118498339 EMI domain containing 2 [Homo sapiens]
          Length = 439

 Score = 45.1 bits (105), Expect = 6e-05
 Identities = 55/195 (28%), Positives = 75/195 (38%), Gaps = 21/195 (10%)

Query: 27  PAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLRQPPTPSAPPG----SPL 82
           P PA PP ++   G+        P G L      G  G      PP P  P G    SP 
Sbjct: 208 PGPAGPPGSKGDRGQTGEKGPAGPPGLLGPPGPRGLPGEMGRPGPPGPPGPAGNPGPSPN 267

Query: 83  HEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQSP 142
                L +L P + ++     R  +  +  V  G  GPRG       P P G  P  + P
Sbjct: 268 SPQGALYSLQPPT-DKDNGDSRLASAIVDTVLAGVPGPRG------PPGPPGP-PGPRGP 319

Query: 143 P-PAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGCSRGSATASGVGGKAIKKAQRI 201
           P P   PG           +RG    + E P   G  G    +ATA G G + +++A +I
Sbjct: 320 PGPPGTPGSQGLAG-----ERGTVGPSGE-PGVKGEEG--EKAATAEGEGVQQLREALKI 371

Query: 202 PAELYLLYIHVNCCH 216
            AE  L+  H+   H
Sbjct: 372 LAERVLILEHMIGIH 386


>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
           sapiens]
          Length = 384

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 67/225 (29%), Positives = 77/225 (34%), Gaps = 65/225 (28%)

Query: 9   APPPAGRERLQNKAWSPAPAPARPPLNQPPG--GKALSTRALQP-------GGALEAGTR 59
           AP P  R R       PA  P  P    PPG  G   +  A+ P       G  L     
Sbjct: 72  APHPDSRTR-------PAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAP 124

Query: 60  GGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQ-----QVR 114
           G R G    R  P P+AP            A   ++  R  S G G   R Q       R
Sbjct: 125 GPRPGCSSARASPAPAAPQ-----------AAARTAPGRAASGGSGPGSRGQGSDQVGAR 173

Query: 115 PGAAGPRGRLPWVTGPR----PAGSLPAAQSP--PPAERPGRDAAGARVCGT--QRGGCA 166
           P  AG  G+ P +T  R    P  S    + P  P   RPG    GAR CGT    GG  
Sbjct: 174 PSRAG--GQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPG-SGTGARSCGTWGSGGGPG 230

Query: 167 RAA----------EAPQP------------TGGRGCSRGSATASG 189
            AA          ++PQP             GGR  S G  T  G
Sbjct: 231 TAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPG 275



 Score = 29.6 bits (65), Expect = 2.6
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 10/86 (11%)

Query: 112 QVRPGAAGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRG---GCARA 168
           + RP A  P  R    + P  +GS     + PP  RP +  +G+R+     G   GC+ A
Sbjct: 78  RTRPAARPPHPRTR--SPPGRSGSGTTFSAVPP--RPSQHQSGSRLRPAAPGPRPGCSSA 133

Query: 169 AEAPQPTGGRGCSR---GSATASGVG 191
             +P P   +  +R   G A + G G
Sbjct: 134 RASPAPAAPQAAARTAPGRAASGGSG 159


>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
           sapiens]
          Length = 384

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 67/225 (29%), Positives = 77/225 (34%), Gaps = 65/225 (28%)

Query: 9   APPPAGRERLQNKAWSPAPAPARPPLNQPPG--GKALSTRALQP-------GGALEAGTR 59
           AP P  R R       PA  P  P    PPG  G   +  A+ P       G  L     
Sbjct: 72  APHPDSRTR-------PAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAP 124

Query: 60  GGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQ-----QVR 114
           G R G    R  P P+AP            A   ++  R  S G G   R Q       R
Sbjct: 125 GPRPGCSSARASPAPAAPQ-----------AAARTAPGRAASGGSGPGSRGQGSDQVGAR 173

Query: 115 PGAAGPRGRLPWVTGPR----PAGSLPAAQSP--PPAERPGRDAAGARVCGT--QRGGCA 166
           P  AG  G+ P +T  R    P  S    + P  P   RPG    GAR CGT    GG  
Sbjct: 174 PSRAG--GQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPG-SGTGARSCGTWGSGGGPG 230

Query: 167 RAA----------EAPQP------------TGGRGCSRGSATASG 189
            AA          ++PQP             GGR  S G  T  G
Sbjct: 231 TAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPG 275



 Score = 29.6 bits (65), Expect = 2.6
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 10/86 (11%)

Query: 112 QVRPGAAGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRG---GCARA 168
           + RP A  P  R    + P  +GS     + PP  RP +  +G+R+     G   GC+ A
Sbjct: 78  RTRPAARPPHPRTR--SPPGRSGSGTTFSAVPP--RPSQHQSGSRLRPAAPGPRPGCSSA 133

Query: 169 AEAPQPTGGRGCSR---GSATASGVG 191
             +P P   +  +R   G A + G G
Sbjct: 134 RASPAPAAPQAAARTAPGRAASGGSG 159


>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 384

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 67/225 (29%), Positives = 77/225 (34%), Gaps = 65/225 (28%)

Query: 9   APPPAGRERLQNKAWSPAPAPARPPLNQPPG--GKALSTRALQP-------GGALEAGTR 59
           AP P  R R       PA  P  P    PPG  G   +  A+ P       G  L     
Sbjct: 72  APHPDSRTR-------PAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAP 124

Query: 60  GGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQ-----QVR 114
           G R G    R  P P+AP            A   ++  R  S G G   R Q       R
Sbjct: 125 GPRPGCSSARASPAPAAPQ-----------AAARTAPGRAASGGSGPGSRGQGSDQVGAR 173

Query: 115 PGAAGPRGRLPWVTGPR----PAGSLPAAQSP--PPAERPGRDAAGARVCGT--QRGGCA 166
           P  AG  G+ P +T  R    P  S    + P  P   RPG    GAR CGT    GG  
Sbjct: 174 PSRAG--GQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPG-SGTGARSCGTWGSGGGPG 230

Query: 167 RAA----------EAPQP------------TGGRGCSRGSATASG 189
            AA          ++PQP             GGR  S G  T  G
Sbjct: 231 TAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPG 275



 Score = 29.6 bits (65), Expect = 2.6
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 10/86 (11%)

Query: 112 QVRPGAAGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRG---GCARA 168
           + RP A  P  R    + P  +GS     + PP  RP +  +G+R+     G   GC+ A
Sbjct: 78  RTRPAARPPHPRTR--SPPGRSGSGTTFSAVPP--RPSQHQSGSRLRPAAPGPRPGCSSA 133

Query: 169 AEAPQPTGGRGCSR---GSATASGVG 191
             +P P   +  +R   G A + G G
Sbjct: 134 RASPAPAAPQAAARTAPGRAASGGSG 159


>gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens]
          Length = 668

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 59/209 (28%), Positives = 73/209 (34%), Gaps = 40/209 (19%)

Query: 3   PGQHGVA--PPPAGRERLQNKAWSPA----PAPARPP-LNQPPGGKALSTRALQPGGALE 55
           PGQ G    P P G +  +     P     P P  PP  + PPG K  +     PG   E
Sbjct: 459 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGE 518

Query: 56  AGTRGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGR----------- 104
            G  G  +    +   P P  PPG P  +G       P  +      G            
Sbjct: 519 KGETG--QAGSPVPGLPGPEGPPGPPGLQGV------PGPKGEAGLDGAKGEKGFQGEKG 570

Query: 105 -----GLAGRLQQVR-PGAAGPRGRL-----PWVTGPRPAGSLPAAQSPP--PAERPGRD 151
                GL G    +  PG AGP+G       P +TGP  A  LP    PP     R  R 
Sbjct: 571 DRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERG 630

Query: 152 AAGARVCGTQRGG-CARAAEAPQPTGGRG 179
             G+R     +G   A   +AP P G  G
Sbjct: 631 KKGSRGPKGDKGDQGAPGLDAPCPLGEDG 659


>gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens]
          Length = 690

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 59/209 (28%), Positives = 73/209 (34%), Gaps = 40/209 (19%)

Query: 3   PGQHGVA--PPPAGRERLQNKAWSPA----PAPARPP-LNQPPGGKALSTRALQPGGALE 55
           PGQ G    P P G +  +     P     P P  PP  + PPG K  +     PG   E
Sbjct: 481 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGE 540

Query: 56  AGTRGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGR----------- 104
            G  G  +    +   P P  PPG P  +G       P  +      G            
Sbjct: 541 KGETG--QAGSPVPGLPGPEGPPGPPGLQGV------PGPKGEAGLDGAKGEKGFQGEKG 592

Query: 105 -----GLAGRLQQVR-PGAAGPRGRL-----PWVTGPRPAGSLPAAQSPP--PAERPGRD 151
                GL G    +  PG AGP+G       P +TGP  A  LP    PP     R  R 
Sbjct: 593 DRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERG 652

Query: 152 AAGARVCGTQRGG-CARAAEAPQPTGGRG 179
             G+R     +G   A   +AP P G  G
Sbjct: 653 KKGSRGPKGDKGDQGAPGLDAPCPLGEDG 681


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.135    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,824,964
Number of Sequences: 37866
Number of extensions: 1026695
Number of successful extensions: 10856
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 1182
Number of HSP's that attempted gapping in prelim test: 7527
Number of HSP's gapped (non-prelim): 3620
length of query: 249
length of database: 18,247,518
effective HSP length: 100
effective length of query: 149
effective length of database: 14,460,918
effective search space: 2154676782
effective search space used: 2154676782
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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