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Search of human proteins with 169171788
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169171788 PREDICTED: hypothetical protein LOC441239 [Homo
sapiens]
(301 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169171788 PREDICTED: hypothetical protein LOC441239 [Homo sap... 615 e-176
gi|169172306 PREDICTED: hypothetical protein LOC441239 [Homo sap... 613 e-176
gi|113418608 PREDICTED: hypothetical protein LOC441239 [Homo sap... 609 e-174
gi|169170482 PREDICTED: hypothetical protein LOC441239 [Homo sap... 609 e-174
gi|96974985 coiled-coil and C2 domain containing 1A [Homo sapiens] 45 6e-05
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 45 1e-04
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 45 1e-04
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 45 1e-04
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H... 44 1e-04
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho... 44 1e-04
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom... 44 1e-04
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 43 4e-04
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 41 0.001
gi|226437606 ankyrin repeat domain 34C [Homo sapiens] 41 0.001
gi|239756364 PREDICTED: ankyrin repeat domain 34C [Homo sapiens] 41 0.001
gi|239750889 PREDICTED: ankyrin repeat domain 34C [Homo sapiens] 41 0.001
gi|239745252 PREDICTED: ankyrin repeat domain 34C [Homo sapiens] 41 0.001
gi|239756270 PREDICTED: StAR-related lipid transfer (START) doma... 40 0.003
gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens] 40 0.003
gi|239750815 PREDICTED: StAR-related lipid transfer (START) doma... 40 0.003
gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens] 40 0.003
gi|239745175 PREDICTED: StAR-related lipid transfer (START) doma... 40 0.003
gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens] 40 0.003
gi|71274172 ankyrin repeat domain 56 [Homo sapiens] 40 0.003
gi|112421108 capicua homolog [Homo sapiens] 38 0.010
gi|19924099 synapsin I isoform Ia [Homo sapiens] 37 0.016
gi|19924097 synapsin I isoform Ib [Homo sapiens] 37 0.016
gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo sa... 37 0.021
gi|239741896 PREDICTED: hypothetical protein XP_002342335 [Homo ... 37 0.021
gi|126116565 MYC binding protein 2 [Homo sapiens] 37 0.021
>gi|169171788 PREDICTED: hypothetical protein LOC441239 [Homo
sapiens]
Length = 301
Score = 615 bits (1585), Expect = e-176
Identities = 301/301 (100%), Positives = 301/301 (100%)
Query: 1 MVLGVQLHSQTASRAFAGRRGPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLR 60
MVLGVQLHSQTASRAFAGRRGPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLR
Sbjct: 1 MVLGVQLHSQTASRAFAGRRGPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLR 60
Query: 61 SEETVEDRVAPGAARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPC 120
SEETVEDRVAPGAARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPC
Sbjct: 61 SEETVEDRVAPGAARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPC 120
Query: 121 LAPGARTVPSAKRLRSRKWPPQCTSRQHAVGSGSVSIRLCGAGCERDSPIPLSSRSGTSH 180
LAPGARTVPSAKRLRSRKWPPQCTSRQHAVGSGSVSIRLCGAGCERDSPIPLSSRSGTSH
Sbjct: 121 LAPGARTVPSAKRLRSRKWPPQCTSRQHAVGSGSVSIRLCGAGCERDSPIPLSSRSGTSH 180
Query: 181 PEDFAEDAAPWSGAENRSRPPRSCWVVEKVEGGQVLSATVKIKIIIIKNEWVSNLSSEVL 240
PEDFAEDAAPWSGAENRSRPPRSCWVVEKVEGGQVLSATVKIKIIIIKNEWVSNLSSEVL
Sbjct: 181 PEDFAEDAAPWSGAENRSRPPRSCWVVEKVEGGQVLSATVKIKIIIIKNEWVSNLSSEVL 240
Query: 241 SSLCEATELTGGRTPIETGTSDEGAPSSGWRVGQQQQQPGFREWGEMRAPGAPQVEEAQV 300
SSLCEATELTGGRTPIETGTSDEGAPSSGWRVGQQQQQPGFREWGEMRAPGAPQVEEAQV
Sbjct: 241 SSLCEATELTGGRTPIETGTSDEGAPSSGWRVGQQQQQPGFREWGEMRAPGAPQVEEAQV 300
Query: 301 W 301
W
Sbjct: 301 W 301
>gi|169172306 PREDICTED: hypothetical protein LOC441239 [Homo
sapiens]
Length = 505
Score = 613 bits (1581), Expect = e-176
Identities = 300/301 (99%), Positives = 300/301 (99%)
Query: 1 MVLGVQLHSQTASRAFAGRRGPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLR 60
MVLGVQLHSQTASRAFAGRRGPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLR
Sbjct: 1 MVLGVQLHSQTASRAFAGRRGPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLR 60
Query: 61 SEETVEDRVAPGAARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPC 120
SEETVEDRVAPGAARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPC
Sbjct: 61 SEETVEDRVAPGAARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPC 120
Query: 121 LAPGARTVPSAKRLRSRKWPPQCTSRQHAVGSGSVSIRLCGAGCERDSPIPLSSRSGTSH 180
LAPGARTVPSAKRLRSRKWPPQCTSRQH VGSGSVSIRLCGAGCERDSPIPLSSRSGTSH
Sbjct: 121 LAPGARTVPSAKRLRSRKWPPQCTSRQHGVGSGSVSIRLCGAGCERDSPIPLSSRSGTSH 180
Query: 181 PEDFAEDAAPWSGAENRSRPPRSCWVVEKVEGGQVLSATVKIKIIIIKNEWVSNLSSEVL 240
PEDFAEDAAPWSGAENRSRPPRSCWVVEKVEGGQVLSATVKIKIIIIKNEWVSNLSSEVL
Sbjct: 181 PEDFAEDAAPWSGAENRSRPPRSCWVVEKVEGGQVLSATVKIKIIIIKNEWVSNLSSEVL 240
Query: 241 SSLCEATELTGGRTPIETGTSDEGAPSSGWRVGQQQQQPGFREWGEMRAPGAPQVEEAQV 300
SSLCEATELTGGRTPIETGTSDEGAPSSGWRVGQQQQQPGFREWGEMRAPGAPQVEEAQV
Sbjct: 241 SSLCEATELTGGRTPIETGTSDEGAPSSGWRVGQQQQQPGFREWGEMRAPGAPQVEEAQV 300
Query: 301 W 301
W
Sbjct: 301 W 301
>gi|113418608 PREDICTED: hypothetical protein LOC441239 [Homo
sapiens]
Length = 301
Score = 609 bits (1570), Expect = e-174
Identities = 298/301 (99%), Positives = 299/301 (99%)
Query: 1 MVLGVQLHSQTASRAFAGRRGPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLR 60
MVLGVQLHSQTASRAFAGRRGPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLR
Sbjct: 1 MVLGVQLHSQTASRAFAGRRGPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLR 60
Query: 61 SEETVEDRVAPGAARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPC 120
SEETVEDRVAPGAARNQGDLEE+GNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPC
Sbjct: 61 SEETVEDRVAPGAARNQGDLEETGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPC 120
Query: 121 LAPGARTVPSAKRLRSRKWPPQCTSRQHAVGSGSVSIRLCGAGCERDSPIPLSSRSGTSH 180
LAPGARTVPSAKRLRSRKWPPQCTSRQH VGSGSVSIRLCGAGCERDSPIPLSSRS TSH
Sbjct: 121 LAPGARTVPSAKRLRSRKWPPQCTSRQHGVGSGSVSIRLCGAGCERDSPIPLSSRSRTSH 180
Query: 181 PEDFAEDAAPWSGAENRSRPPRSCWVVEKVEGGQVLSATVKIKIIIIKNEWVSNLSSEVL 240
PEDFAEDAAPWSGAENRSRPPRSCWVVEKVEGGQVLSATVKIKIIIIKNEWVSNLSSEVL
Sbjct: 181 PEDFAEDAAPWSGAENRSRPPRSCWVVEKVEGGQVLSATVKIKIIIIKNEWVSNLSSEVL 240
Query: 241 SSLCEATELTGGRTPIETGTSDEGAPSSGWRVGQQQQQPGFREWGEMRAPGAPQVEEAQV 300
SSLCEATELTGGRTPIETGTSDEGAPSSGWRVGQQQQQPGFREWGEMRAPGAPQVEEAQV
Sbjct: 241 SSLCEATELTGGRTPIETGTSDEGAPSSGWRVGQQQQQPGFREWGEMRAPGAPQVEEAQV 300
Query: 301 W 301
W
Sbjct: 301 W 301
>gi|169170482 PREDICTED: hypothetical protein LOC441239 [Homo
sapiens]
Length = 542
Score = 609 bits (1570), Expect = e-174
Identities = 298/301 (99%), Positives = 299/301 (99%)
Query: 1 MVLGVQLHSQTASRAFAGRRGPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLR 60
MVLGVQLHSQTASRAFAGRRGPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLR
Sbjct: 1 MVLGVQLHSQTASRAFAGRRGPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLR 60
Query: 61 SEETVEDRVAPGAARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPC 120
SEETVEDRVAPGAARNQGDLEE+GNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPC
Sbjct: 61 SEETVEDRVAPGAARNQGDLEETGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPC 120
Query: 121 LAPGARTVPSAKRLRSRKWPPQCTSRQHAVGSGSVSIRLCGAGCERDSPIPLSSRSGTSH 180
LAPGARTVPSAKRLRSRKWPPQCTSRQH VGSGSVSIRLCGAGCERDSPIPLSSRS TSH
Sbjct: 121 LAPGARTVPSAKRLRSRKWPPQCTSRQHGVGSGSVSIRLCGAGCERDSPIPLSSRSRTSH 180
Query: 181 PEDFAEDAAPWSGAENRSRPPRSCWVVEKVEGGQVLSATVKIKIIIIKNEWVSNLSSEVL 240
PEDFAEDAAPWSGAENRSRPPRSCWVVEKVEGGQVLSATVKIKIIIIKNEWVSNLSSEVL
Sbjct: 181 PEDFAEDAAPWSGAENRSRPPRSCWVVEKVEGGQVLSATVKIKIIIIKNEWVSNLSSEVL 240
Query: 241 SSLCEATELTGGRTPIETGTSDEGAPSSGWRVGQQQQQPGFREWGEMRAPGAPQVEEAQV 300
SSLCEATELTGGRTPIETGTSDEGAPSSGWRVGQQQQQPGFREWGEMRAPGAPQVEEAQV
Sbjct: 241 SSLCEATELTGGRTPIETGTSDEGAPSSGWRVGQQQQQPGFREWGEMRAPGAPQVEEAQV 300
Query: 301 W 301
W
Sbjct: 301 W 301
>gi|96974985 coiled-coil and C2 domain containing 1A [Homo sapiens]
Length = 951
Score = 45.4 bits (106), Expect = 6e-05
Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 15/125 (12%)
Query: 22 PRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLRSEETVEDRVAPGAARNQGDLE 81
PR T+ + AP +SSP + + P P P L+S + + ++A A+ QGD
Sbjct: 224 PRVTLEGPSATAP-ASSPGLAKPQMPPGPCSPGPLAQLQSRQR-DYKLAALHAKQQGDTT 281
Query: 82 ESGN-------------LASRGDAAPGKGLPPPASELSSARASPPQRGPDPCLAPGARTV 128
+ SRG+ LPPP +L SPP + P P AP V
Sbjct: 282 AAARHFRVAKSFDAVLEALSRGEPVDLSCLPPPPDQLPPDPPSPPSQPPTPATAPSTTEV 341
Query: 129 PSAKR 133
P R
Sbjct: 342 PPPPR 346
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 44.7 bits (104), Expect = 1e-04
Identities = 79/284 (27%), Positives = 106/284 (37%), Gaps = 47/284 (16%)
Query: 22 PRATVPEQTQAAPVSSSPAAFQQRG-DPHPRQPHLTVPLRSEETVEDRVAPGAARNQGDL 80
P VP A+P +P G D P LT+ L +P + + DL
Sbjct: 569 PLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDL 628
Query: 81 EESGNLAS------RG-DAAPGKGL---PPPASELSSARASPPQRGPDPCLAPGARTVPS 130
+ A+ RG D+ P G PPP +EL++ + RGP P LA R P
Sbjct: 629 AGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLA--FRGAPG 686
Query: 131 AKRLRSRKWPPQCTSRQHAVGSGSVSIRLC----GAGCERDSPIPLSSRSGTSHPEDFAE 186
A WPP A G GS LC G E +P P + G S P
Sbjct: 687 A----PLPWPP-------ATGPGSAD-GLCTIYETEGPESATPAPGALDPGPS-PGTSGG 733
Query: 187 DAAPWSGAENRSRPPRSCWVVEKVEGGQVLSATVKIKIIIIKNEWVSNLSSEVLSSLCEA 246
AA +GA SR P+ + E G L A+V V +L S L L A
Sbjct: 734 KAAAGAGAGASSRSPKQARLGELPLG--ALQASV-----------VQHLLSRTL--LLAA 778
Query: 247 TELTGGRTPIETGTSDEGAPSSGWRVGQQQQQPGFREWGEMRAP 290
E G + G ++ G + G R + G W E+ +P
Sbjct: 779 AEGAAGGSGGGPGGAEGGGVTGGARAALSDAELG--RWAELLSP 820
Score = 37.0 bits (84), Expect = 0.021
Identities = 61/207 (29%), Positives = 75/207 (36%), Gaps = 29/207 (14%)
Query: 12 ASRAFAGRRGPRATVPEQTQAAPVSSSPAAFQQRGDPHP-RQPHLTVPLRSEETVEDRVA 70
ASR A RG RA + T PV SSP P P Q L + + E+ VA
Sbjct: 91 ASRPPASGRGERAPPAKNTSPGPV-SSPGRASGTTRPGPLGQKGLRI------SAEETVA 143
Query: 71 PGAARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPCLAPGARTVPS 130
G A A R + P G P PA S A P P AP AR P
Sbjct: 144 RGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRP--APSARPRPP 201
Query: 131 AKRLRSRKWPPQCTSRQHAVGSGSVSIR---LCGAGCER-------DSPIPLSS--RSGT 178
+ R ++ +H+ S + R G G +R S PLSS RSG
Sbjct: 202 TEGPRK----SVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGP 257
Query: 179 S---HPEDFAEDAAPWSGAENRSRPPR 202
S P A + P RPP+
Sbjct: 258 SARGTPRAPAHPSQPKPKGLQALRPPQ 284
Score = 33.1 bits (74), Expect = 0.31
Identities = 37/164 (22%), Positives = 60/164 (36%), Gaps = 21/164 (12%)
Query: 21 GPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLRSEETVEDRVAPGAARNQGDL 80
GPR +V ++ + SPAA ++ Q + L S T A +G
Sbjct: 204 GPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARG-- 261
Query: 81 EESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPCLAP---GARTVPSAKRLRSR 137
R A P + P L + +PP++ P L P PS
Sbjct: 262 ------TPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAALQS 315
Query: 138 KWPPQCTSRQHAVGSGSVSIRLCGAGCERDSPIPLSSRSGTSHP 181
+ PP + H S S++ C+ +P+PL+ S ++ P
Sbjct: 316 QAPPTLPATPH---SSSLT-------CQLATPLPLAPPSPSAPP 349
Score = 30.0 bits (66), Expect = 2.6
Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 8/104 (7%)
Query: 22 PRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLRSEETVEDRVAPGAARNQGDLE 81
P A+ P A P +P A P P + P+++ +P A+
Sbjct: 411 PPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAP------FSPPASPPVSPSA 464
Query: 82 ESGNLASRGDAAPGKGLPP--PASELSSARASPPQRGPDPCLAP 123
+ A AAP +PP PAS S A+PP + P P AP
Sbjct: 465 TPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAP 508
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapiens]
Length = 1124
Score = 44.7 bits (104), Expect = 1e-04
Identities = 79/284 (27%), Positives = 106/284 (37%), Gaps = 47/284 (16%)
Query: 22 PRATVPEQTQAAPVSSSPAAFQQRG-DPHPRQPHLTVPLRSEETVEDRVAPGAARNQGDL 80
P VP A+P +P G D P LT+ L +P + + DL
Sbjct: 838 PLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDL 897
Query: 81 EESGNLAS------RG-DAAPGKGL---PPPASELSSARASPPQRGPDPCLAPGARTVPS 130
+ A+ RG D+ P G PPP +EL++ + RGP P LA R P
Sbjct: 898 AGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLA--FRGAPG 955
Query: 131 AKRLRSRKWPPQCTSRQHAVGSGSVSIRLC----GAGCERDSPIPLSSRSGTSHPEDFAE 186
A WPP A G GS LC G E +P P + G S P
Sbjct: 956 A----PLPWPP-------ATGPGSAD-GLCTIYETEGPESATPAPGALDPGPS-PGTSGG 1002
Query: 187 DAAPWSGAENRSRPPRSCWVVEKVEGGQVLSATVKIKIIIIKNEWVSNLSSEVLSSLCEA 246
AA +GA SR P+ + E G L A+V V +L S L L A
Sbjct: 1003 KAAAGAGAGASSRSPKQARLGELPLG--ALQASV-----------VQHLLSRTL--LLAA 1047
Query: 247 TELTGGRTPIETGTSDEGAPSSGWRVGQQQQQPGFREWGEMRAP 290
E G + G ++ G + G R + G W E+ +P
Sbjct: 1048 AEGAAGGSGGGPGGAEGGGVTGGARAALSDAELG--RWAELLSP 1089
Score = 37.0 bits (84), Expect = 0.021
Identities = 61/207 (29%), Positives = 75/207 (36%), Gaps = 29/207 (14%)
Query: 12 ASRAFAGRRGPRATVPEQTQAAPVSSSPAAFQQRGDPHP-RQPHLTVPLRSEETVEDRVA 70
ASR A RG RA + T PV SSP P P Q L + + E+ VA
Sbjct: 91 ASRPPASGRGERAPPAKNTSPGPV-SSPGRASGTTRPGPLGQKGLRI------SAEETVA 143
Query: 71 PGAARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPCLAPGARTVPS 130
G A A R + P G P PA S A P P AP AR P
Sbjct: 144 RGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRP--APSARPRPP 201
Query: 131 AKRLRSRKWPPQCTSRQHAVGSGSVSIR---LCGAGCER-------DSPIPLSS--RSGT 178
+ R ++ +H+ S + R G G +R S PLSS RSG
Sbjct: 202 TEGPRK----SVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGP 257
Query: 179 S---HPEDFAEDAAPWSGAENRSRPPR 202
S P A + P RPP+
Sbjct: 258 SARGTPRAPAHPSQPKPKGLQALRPPQ 284
Score = 32.7 bits (73), Expect = 0.40
Identities = 37/145 (25%), Positives = 51/145 (35%), Gaps = 25/145 (17%)
Query: 9 SQTASRAFAGRRGPRATVPEQTQA---APVSSSPAAFQQ----RGDPHPRQPHLTVPLRS 61
SQ + R P+ T P + A P+SSSP A + P P + PL +
Sbjct: 270 SQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSGTKARPVPPPDNAATPLPA 329
Query: 62 EETVEDRVAPGAARNQGDLEESGNLASRGDAAP-GKGLPPPASELSSARASPPQRGPDPC 120
L S LA+ AP PP L S A+PP + P
Sbjct: 330 T-----------------LPPSPPLATPLPLAPPSPSAPPSLQTLPSPPATPPSQAPPSM 372
Query: 121 LAPGARTVPSAKRLRSRKWPPQCTS 145
P + PS + + + P TS
Sbjct: 373 TTPPMQAPPSLQTIPPIQVPHSLTS 397
Score = 32.7 bits (73), Expect = 0.40
Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 8/111 (7%)
Query: 22 PRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLRSEETVEDRVAPGAARNQGDLE 81
P A+ P A P +P A P P + P+++ +P A+
Sbjct: 636 PPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAP------FSPPASPPVSPSA 689
Query: 82 ESGNLASRGDAAPGKGLPP--PASELSSARASPPQRGPDPCLAPGARTVPS 130
+ A AAP +PP PAS S A+PP + P P AP + PS
Sbjct: 690 TPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPS 740
Score = 32.0 bits (71), Expect = 0.69
Identities = 30/111 (27%), Positives = 39/111 (35%), Gaps = 20/111 (18%)
Query: 22 PRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLRSEETVEDRVAPGAARNQGDLE 81
P A+ P A P S +P + P P + P+ T + P A
Sbjct: 679 PPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLA------- 731
Query: 82 ESGNLASRGDAAPGKGLPP--PASELSSARASPPQRGPDPCLAPGARTVPS 130
AP +PP PAS S A+PP R P AP + PS
Sbjct: 732 -----------APPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPS 771
Score = 30.0 bits (66), Expect = 2.6
Identities = 29/111 (26%), Positives = 37/111 (33%), Gaps = 20/111 (18%)
Query: 22 PRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLRSEETVEDRVAPGAARNQGDLE 81
P A+ P A P +P P P + P+ T RV P A
Sbjct: 710 PPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLA------- 762
Query: 82 ESGNLASRGDAAPGKGLPP--PASELSSARASPPQRGPDPCLAPGARTVPS 130
AP +PP PAS S A PP + P P + +PS
Sbjct: 763 -----------APPLQVPPSPPASLPMSPLAKPPPQAPPALATPPLQALPS 802
Score = 29.6 bits (65), Expect = 3.4
Identities = 29/124 (23%), Positives = 44/124 (35%), Gaps = 11/124 (8%)
Query: 21 GPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLRSEETVEDRVAPGAARNQGDL 80
GPR +V ++ + SPAA ++ Q + L S T A +G
Sbjct: 204 GPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARG-- 261
Query: 81 EESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPCLAP---GARTVPSAKRLRSR 137
R A P + P L + +PP++ P L P PS ++R
Sbjct: 262 ------TPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSGTKAR 315
Query: 138 KWPP 141
PP
Sbjct: 316 PVPP 319
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 44.7 bits (104), Expect = 1e-04
Identities = 79/284 (27%), Positives = 106/284 (37%), Gaps = 47/284 (16%)
Query: 22 PRATVPEQTQAAPVSSSPAAFQQRG-DPHPRQPHLTVPLRSEETVEDRVAPGAARNQGDL 80
P VP A+P +P G D P LT+ L +P + + DL
Sbjct: 530 PLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDL 589
Query: 81 EESGNLAS------RG-DAAPGKGL---PPPASELSSARASPPQRGPDPCLAPGARTVPS 130
+ A+ RG D+ P G PPP +EL++ + RGP P LA R P
Sbjct: 590 AGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLA--FRGAPG 647
Query: 131 AKRLRSRKWPPQCTSRQHAVGSGSVSIRLC----GAGCERDSPIPLSSRSGTSHPEDFAE 186
A WPP A G GS LC G E +P P + G S P
Sbjct: 648 A----PLPWPP-------ATGPGSAD-GLCTIYETEGPESATPAPGALDPGPS-PGTSGG 694
Query: 187 DAAPWSGAENRSRPPRSCWVVEKVEGGQVLSATVKIKIIIIKNEWVSNLSSEVLSSLCEA 246
AA +GA SR P+ + E G L A+V V +L S L L A
Sbjct: 695 KAAAGAGAGASSRSPKQARLGELPLG--ALQASV-----------VQHLLSRTL--LLAA 739
Query: 247 TELTGGRTPIETGTSDEGAPSSGWRVGQQQQQPGFREWGEMRAP 290
E G + G ++ G + G R + G W E+ +P
Sbjct: 740 AEGAAGGSGGGPGGAEGGGVTGGARAALSDAELG--RWAELLSP 781
Score = 30.4 bits (67), Expect = 2.0
Identities = 35/123 (28%), Positives = 43/123 (34%), Gaps = 29/123 (23%)
Query: 32 AAPVSSSPAAFQQRGDP----HPRQPHLTVPLRSEETVEDRVAP---GAARNQGDLEESG 84
++P S P+A RG P HP QP P + +V P AA G L S
Sbjct: 241 SSPARSGPSA---RGTPRAPAHPSQPK---PKGLQALRPPQVTPPRKDAAPALGPLSSSP 294
Query: 85 NLASRGDAAPGKGLPPPASELSSARASPPQRG----------------PDPCLAPGARTV 128
A P PP L S A+PP + P P L+P A
Sbjct: 295 LATPSPSAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPP 354
Query: 129 PSA 131
P A
Sbjct: 355 PQA 357
Score = 30.0 bits (66), Expect = 2.6
Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 8/104 (7%)
Query: 22 PRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLRSEETVEDRVAPGAARNQGDLE 81
P A+ P A P +P A P P + P+++ +P A+
Sbjct: 372 PPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAP------FSPPASPPVSPSA 425
Query: 82 ESGNLASRGDAAPGKGLPP--PASELSSARASPPQRGPDPCLAP 123
+ A AAP +PP PAS S A+PP + P P AP
Sbjct: 426 TPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAP 469
Score = 28.1 bits (61), Expect = 9.9
Identities = 38/132 (28%), Positives = 48/132 (36%), Gaps = 12/132 (9%)
Query: 19 RRGPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLRSEETVEDRVAPGAARNQG 78
RR P A S AA + G P P P T R + +A
Sbjct: 152 RRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRP----PTEGPRKSVSSASEHS 207
Query: 79 DLEESGNLASRGDAAPGKGLPPPASELSSARA----SPPQRGPDPCLAPGARTVPSAKRL 134
E S A+R + G GL PAS S+ A SP + GP P A PS +
Sbjct: 208 TTEPSP--AARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKP 265
Query: 135 RSRK--WPPQCT 144
+ + PPQ T
Sbjct: 266 KGLQALRPPQVT 277
>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
sapiens]
Length = 828
Score = 44.3 bits (103), Expect = 1e-04
Identities = 39/123 (31%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 18 GRRGPRATVPEQ----TQAAPVSSSPAAFQQRGDPHPRQPH-LTVPLRSEETVEDRVAPG 72
G RGP+ + T+ +P S P ++GDP P P L + ++ DR PG
Sbjct: 415 GPRGPKGEPGRRGDPGTKGSPGSDGPKG--EKGDPGPEGPRGLAGEVGNKGAKGDRGLPG 472
Query: 73 AARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRG---PDPCLAPGARTVP 129
QG L E G SRGD PG P S + P + G P P APG + P
Sbjct: 473 PRGPQGALGEPGKQGSRGD--PGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEP 530
Query: 130 SAK 132
+
Sbjct: 531 GPR 533
>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
sapiens]
Length = 918
Score = 44.3 bits (103), Expect = 1e-04
Identities = 39/123 (31%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 18 GRRGPRATVPEQ----TQAAPVSSSPAAFQQRGDPHPRQPH-LTVPLRSEETVEDRVAPG 72
G RGP+ + T+ +P S P ++GDP P P L + ++ DR PG
Sbjct: 415 GPRGPKGEPGRRGDPGTKGSPGSDGPKG--EKGDPGPEGPRGLAGEVGNKGAKGDRGLPG 472
Query: 73 AARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRG---PDPCLAPGARTVP 129
QG L E G SRGD PG P S + P + G P P APG + P
Sbjct: 473 PRGPQGALGEPGKQGSRGD--PGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEP 530
Query: 130 SAK 132
+
Sbjct: 531 GPR 533
>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
sapiens]
Length = 1019
Score = 44.3 bits (103), Expect = 1e-04
Identities = 39/123 (31%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 18 GRRGPRATVPEQ----TQAAPVSSSPAAFQQRGDPHPRQPH-LTVPLRSEETVEDRVAPG 72
G RGP+ + T+ +P S P ++GDP P P L + ++ DR PG
Sbjct: 415 GPRGPKGEPGRRGDPGTKGSPGSDGPKG--EKGDPGPEGPRGLAGEVGNKGAKGDRGLPG 472
Query: 73 AARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRG---PDPCLAPGARTVP 129
QG L E G SRGD PG P S + P + G P P APG + P
Sbjct: 473 PRGPQGALGEPGKQGSRGD--PGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEP 530
Query: 130 SAK 132
+
Sbjct: 531 GPR 533
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 42.7 bits (99), Expect = 4e-04
Identities = 33/111 (29%), Positives = 44/111 (39%), Gaps = 2/111 (1%)
Query: 20 RGPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLRSEETVEDRVAPGAARNQGD 79
RGP P Q+ P P QQ+ P P+QP P + +
Sbjct: 44 RGPMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPP 103
Query: 80 LEESGNLASRGDA-APGKGLPPPASELSSARASPPQRGPDPCLAPGARTVP 129
+ S + ++G APG G PPAS S+ A+PP G P PG P
Sbjct: 104 QDSSKPVVAQGPGPAPGVGSAPPASS-SAPPATPPTSGAPPGSGPGPTPTP 153
Score = 32.3 bits (72), Expect = 0.53
Identities = 39/143 (27%), Positives = 50/143 (34%), Gaps = 37/143 (25%)
Query: 18 GRRGPRATVP----EQTQAAPVSSSPAAFQ---QRGDPHPRQPHLTV--PLRSEETVEDR 68
G+ GP+ +P Q Q P P Q + PHP QPH P +++ +
Sbjct: 52 GQSGPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHP-QPHQQQQPPPPPQDSSKPV 110
Query: 69 VA--PGAARNQGDLEESGNLAS-----RGDAAPGKG-----------------LPPPASE 104
VA PG A G + + A A PG G PPP
Sbjct: 111 VAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPP 170
Query: 105 LSSARASPPQRG---PDPCLAPG 124
S +PPQ G P P PG
Sbjct: 171 SSGVPTTPPQAGGPPPPPAAVPG 193
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 41.2 bits (95), Expect = 0.001
Identities = 48/185 (25%), Positives = 66/185 (35%), Gaps = 30/185 (16%)
Query: 31 QAAPVSSSPAAFQQRGDPHPRQPHLTVPLRSEET------VEDRVAPGAARNQGDLEESG 84
+A P S A + G+ P + P EE VE A G A+ + + E G
Sbjct: 2188 EAQPESEGIEAPEAEGEAQPELEGVEAPEAEEEAQPEPEGVETPEAEGEAQPESEGETQG 2247
Query: 85 NLASRGDAAPGKGLPPPASELSSA----RASPPQR--GPDPCLAPGARTVPSAKRLRS-- 136
+ G G ASE SS R +PP G P PG++T PS+ R S
Sbjct: 2248 EKKGSPQVSLGDGQSEEASESSSPVPEDRPTPPPSPGGDTPHQRPGSQTGPSSSRASSWG 2307
Query: 137 RKWPPQCTSRQHAVGSGSVSIRLCGAGCERDSPIPLSSRSGTSHPEDFAEDAAPWSGAEN 196
W + H +G D+ P + +GT H E A P S
Sbjct: 2308 NCWQKD-SENDHVLG---------------DTRSPDAKSTGTPHAERKATRMYPESSTSE 2351
Query: 197 RSRPP 201
+ P
Sbjct: 2352 QEEAP 2356
>gi|226437606 ankyrin repeat domain 34C [Homo sapiens]
Length = 535
Score = 40.8 bits (94), Expect = 0.001
Identities = 43/143 (30%), Positives = 62/143 (43%), Gaps = 16/143 (11%)
Query: 25 TVPEQTQAAPVSSSP----AAFQQRGDPHPRQPHL-TVPLRSEETVEDRVAPGAARNQGD 79
TV EQ PVSS+P AA+++ PHPR T+P+ E+ P A +
Sbjct: 312 TVTEQVLKIPVSSAPASWKAAYEKGQAPHPRLARRGTLPVDQEKCGMGPSGPSALKEPAS 371
Query: 80 LEESGNLASRGDAAPGKGLPPPASELSSARASPPQR---GPDPCLAPGAR----TVPSAK 132
L+ N D PG PP + L S + ++ L G+R TVPS
Sbjct: 372 LKWLENDLYDLDIQPGPD-PPNSISLESGKGPLDRKKLNSSHLSLFHGSRESLDTVPSTS 430
Query: 133 RLRSRKWPPQCTSRQHAVGSGSV 155
+R+ PP R+ GSG++
Sbjct: 431 PSSARRRPPHLLERR---GSGTL 450
>gi|239756364 PREDICTED: ankyrin repeat domain 34C [Homo sapiens]
Length = 534
Score = 40.8 bits (94), Expect = 0.001
Identities = 43/143 (30%), Positives = 62/143 (43%), Gaps = 16/143 (11%)
Query: 25 TVPEQTQAAPVSSSP----AAFQQRGDPHPRQPHL-TVPLRSEETVEDRVAPGAARNQGD 79
TV EQ PVSS+P AA+++ PHPR T+P+ E+ P A +
Sbjct: 311 TVTEQVLKIPVSSAPASWKAAYEKGQAPHPRLARRGTLPVDQEKCGMGPSGPSALKEPAS 370
Query: 80 LEESGNLASRGDAAPGKGLPPPASELSSARASPPQR---GPDPCLAPGAR----TVPSAK 132
L+ N D PG PP + L S + ++ L G+R TVPS
Sbjct: 371 LKWLENDLYDLDIQPGPD-PPNSISLESGKGPLDRKKLNSSHLSLFHGSRESLDTVPSTS 429
Query: 133 RLRSRKWPPQCTSRQHAVGSGSV 155
+R+ PP R+ GSG++
Sbjct: 430 PSSARRRPPHLLERR---GSGTL 449
>gi|239750889 PREDICTED: ankyrin repeat domain 34C [Homo sapiens]
Length = 534
Score = 40.8 bits (94), Expect = 0.001
Identities = 43/143 (30%), Positives = 62/143 (43%), Gaps = 16/143 (11%)
Query: 25 TVPEQTQAAPVSSSP----AAFQQRGDPHPRQPHL-TVPLRSEETVEDRVAPGAARNQGD 79
TV EQ PVSS+P AA+++ PHPR T+P+ E+ P A +
Sbjct: 311 TVTEQVLKIPVSSAPASWKAAYEKGQAPHPRLARRGTLPVDQEKCGMGPSGPSALKEPAS 370
Query: 80 LEESGNLASRGDAAPGKGLPPPASELSSARASPPQR---GPDPCLAPGAR----TVPSAK 132
L+ N D PG PP + L S + ++ L G+R TVPS
Sbjct: 371 LKWLENDLYDLDIQPGPD-PPNSISLESGKGPLDRKKLNSSHLSLFHGSRESLDTVPSTS 429
Query: 133 RLRSRKWPPQCTSRQHAVGSGSV 155
+R+ PP R+ GSG++
Sbjct: 430 PSSARRRPPHLLERR---GSGTL 449
>gi|239745252 PREDICTED: ankyrin repeat domain 34C [Homo sapiens]
Length = 535
Score = 40.8 bits (94), Expect = 0.001
Identities = 43/143 (30%), Positives = 62/143 (43%), Gaps = 16/143 (11%)
Query: 25 TVPEQTQAAPVSSSP----AAFQQRGDPHPRQPHL-TVPLRSEETVEDRVAPGAARNQGD 79
TV EQ PVSS+P AA+++ PHPR T+P+ E+ P A +
Sbjct: 312 TVTEQVLKIPVSSAPASWKAAYEKGQAPHPRLARRGTLPVDQEKCGMGPSGPSALKEPAS 371
Query: 80 LEESGNLASRGDAAPGKGLPPPASELSSARASPPQR---GPDPCLAPGAR----TVPSAK 132
L+ N D PG PP + L S + ++ L G+R TVPS
Sbjct: 372 LKWLENDLYDLDIQPGPD-PPNSISLESGKGPLDRKKLNSSHLSLFHGSRESLDTVPSTS 430
Query: 133 RLRSRKWPPQCTSRQHAVGSGSV 155
+R+ PP R+ GSG++
Sbjct: 431 PSSARRRPPHLLERR---GSGTL 450
>gi|239756270 PREDICTED: StAR-related lipid transfer (START) domain
containing 9 [Homo sapiens]
Length = 4614
Score = 40.0 bits (92), Expect = 0.003
Identities = 40/176 (22%), Positives = 66/176 (37%), Gaps = 21/176 (11%)
Query: 22 PRATVPEQTQAAPVSSSPAA--FQQRGDPHPRQPHLTVPLRSEETVEDRVAPGAARNQGD 79
PR T+ E +Q+ P ++ Q P ++P T+ E ++ +
Sbjct: 2667 PRVTLHELSQSVPQETAEGIPPGSQDSSPEHQEPR-TLDTTYGEVSDNLLVTAQGEKTAH 2725
Query: 80 LEESGNLASRGDAAPGKG-------LPPPASELSSARASPPQRGPDPCLAPGARTVPSAK 132
E ++ G P ++ RASP Q + PGA T
Sbjct: 2726 FESQSVTCDVQNSTSASGPKQDHVQCPEASTGFEEGRASPKQ----DIILPGALT----- 2776
Query: 133 RLRSRKWPPQCTSRQHAVGSGSVSIRLCGAGCERDSPIPLSSRSGTSHPEDFAEDA 188
R+ QC + +VGSG + C AG + PIPL + +++P E+A
Sbjct: 2777 RVALEAPTQQCVQCKESVGSGLTEV--CRAGSKHSRPIPLPDQRPSANPGGIGEEA 2830
>gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 40.0 bits (92), Expect = 0.003
Identities = 45/160 (28%), Positives = 61/160 (38%), Gaps = 33/160 (20%)
Query: 12 ASRAFAGRRGPRATVPEQTQAAP----------VSSSPAAFQQRGDPHPRQPHLTVPLRS 61
A+ A G R P A +PE T+ AP +++ A ++ R P P L S
Sbjct: 191 AAAAAQGLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPLPPTEFL-----S 245
Query: 62 EETVEDRVAPGAARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPCL 121
R P R ESG RG + G + A A P P PCL
Sbjct: 246 PRRTRPRKHPERTRRPAQRLESG---CRGHCSRG----------APALAPPKLSPPFPCL 292
Query: 122 APGARTVPSAKRLRSRKWPPQCTSRQHAVGSGSVSIRLCG 161
A A A+R S R+ +GSGS+++ L G
Sbjct: 293 AQSASRAAGARRALSAS-----RGRRGLLGSGSLALPLPG 327
>gi|239750815 PREDICTED: StAR-related lipid transfer (START) domain
containing 9 [Homo sapiens]
Length = 4614
Score = 40.0 bits (92), Expect = 0.003
Identities = 40/176 (22%), Positives = 66/176 (37%), Gaps = 21/176 (11%)
Query: 22 PRATVPEQTQAAPVSSSPAA--FQQRGDPHPRQPHLTVPLRSEETVEDRVAPGAARNQGD 79
PR T+ E +Q+ P ++ Q P ++P T+ E ++ +
Sbjct: 2667 PRVTLHELSQSVPQETAEGIPPGSQDSSPEHQEPR-TLDTTYGEVSDNLLVTAQGEKTAH 2725
Query: 80 LEESGNLASRGDAAPGKG-------LPPPASELSSARASPPQRGPDPCLAPGARTVPSAK 132
E ++ G P ++ RASP Q + PGA T
Sbjct: 2726 FESQSVTCDVQNSTSASGPKQDHVQCPEASTGFEEGRASPKQ----DTILPGALT----- 2776
Query: 133 RLRSRKWPPQCTSRQHAVGSGSVSIRLCGAGCERDSPIPLSSRSGTSHPEDFAEDA 188
R+ QC + +VGSG + C AG + PIPL + +++P E+A
Sbjct: 2777 RVALEAPTQQCVQCKESVGSGLTEV--CRAGSKHSRPIPLPDQRPSANPGGIGEEA 2830
>gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 40.0 bits (92), Expect = 0.003
Identities = 45/160 (28%), Positives = 61/160 (38%), Gaps = 33/160 (20%)
Query: 12 ASRAFAGRRGPRATVPEQTQAAP----------VSSSPAAFQQRGDPHPRQPHLTVPLRS 61
A+ A G R P A +PE T+ AP +++ A ++ R P P L S
Sbjct: 191 AAAAAQGLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPLPPTEFL-----S 245
Query: 62 EETVEDRVAPGAARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPCL 121
R P R ESG RG + G + A A P P PCL
Sbjct: 246 PRRTRPRKHPERTRRPAQRLESG---CRGHCSRG----------APALAPPKLSPPFPCL 292
Query: 122 APGARTVPSAKRLRSRKWPPQCTSRQHAVGSGSVSIRLCG 161
A A A+R S R+ +GSGS+++ L G
Sbjct: 293 AQSASRAAGARRALSAS-----RGRRGLLGSGSLALPLPG 327
>gi|239745175 PREDICTED: StAR-related lipid transfer (START) domain
containing 9 [Homo sapiens]
Length = 4614
Score = 40.0 bits (92), Expect = 0.003
Identities = 40/176 (22%), Positives = 66/176 (37%), Gaps = 21/176 (11%)
Query: 22 PRATVPEQTQAAPVSSSPAA--FQQRGDPHPRQPHLTVPLRSEETVEDRVAPGAARNQGD 79
PR T+ E +Q+ P ++ Q P ++P T+ E ++ +
Sbjct: 2667 PRVTLHELSQSVPQETAEGIPPGSQDSSPEHQEPR-TLDTTYGEVSDNLLVTAQGEKTAH 2725
Query: 80 LEESGNLASRGDAAPGKG-------LPPPASELSSARASPPQRGPDPCLAPGARTVPSAK 132
E ++ G P ++ RASP Q + PGA T
Sbjct: 2726 FESQSVTCDVQNSTSASGPKQDHVQCPEASTGFEEGRASPKQ----DTILPGALT----- 2776
Query: 133 RLRSRKWPPQCTSRQHAVGSGSVSIRLCGAGCERDSPIPLSSRSGTSHPEDFAEDA 188
R+ QC + +VGSG + C AG + PIPL + +++P E+A
Sbjct: 2777 RVALEAPTQQCVQCKESVGSGLTEV--CRAGSKHSRPIPLPDQRPSANPGGIGEEA 2830
>gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 40.0 bits (92), Expect = 0.003
Identities = 45/160 (28%), Positives = 61/160 (38%), Gaps = 33/160 (20%)
Query: 12 ASRAFAGRRGPRATVPEQTQAAP----------VSSSPAAFQQRGDPHPRQPHLTVPLRS 61
A+ A G R P A +PE T+ AP +++ A ++ R P P L S
Sbjct: 191 AAAAAQGLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPLPPTEFL-----S 245
Query: 62 EETVEDRVAPGAARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPCL 121
R P R ESG RG + G + A A P P PCL
Sbjct: 246 PRRTRPRKHPERTRRPAQRLESG---CRGHCSRG----------APALAPPKLSPPFPCL 292
Query: 122 APGARTVPSAKRLRSRKWPPQCTSRQHAVGSGSVSIRLCG 161
A A A+R S R+ +GSGS+++ L G
Sbjct: 293 AQSASRAAGARRALSAS-----RGRRGLLGSGSLALPLPG 327
>gi|71274172 ankyrin repeat domain 56 [Homo sapiens]
Length = 793
Score = 39.7 bits (91), Expect = 0.003
Identities = 36/103 (34%), Positives = 44/103 (42%), Gaps = 15/103 (14%)
Query: 20 RGPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLRSEETVEDRVAPGAARNQGD 79
R P A P AAP S A +RG+P +QP R E+ E+ A GAA D
Sbjct: 90 REPPAAAPSAGGAAPCSPRGA---RRGEPPQQQPRRR---RREKEPEEEPA-GAAARAAD 142
Query: 80 LEESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPCLA 122
+G S APGKG ++ SP QR P P A
Sbjct: 143 AACNGLPGSDSRRAPGKG--------GGSKGSPGQRPPVPAAA 177
Score = 28.5 bits (62), Expect = 7.6
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 58 PLRSEETVEDRVAPGAARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRGP 117
P R+ +DR GA+R + E G LA PP E +++RASPP P
Sbjct: 225 PARALPAQDDR---GASRER----EEGALAEPAPVPAVAHSPPATVEAATSRASPPALLP 277
Query: 118 DP 119
P
Sbjct: 278 GP 279
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 38.1 bits (87), Expect = 0.010
Identities = 47/182 (25%), Positives = 64/182 (35%), Gaps = 49/182 (26%)
Query: 9 SQTASRAFAGRRGPRATVPEQTQAA----PVSSSPAAFQQRGDPHPRQPHLTVPLRS--- 61
S T S + P P++ +AA PV S A R P PRQP P+R
Sbjct: 1159 SMTYSLVAPKAQRPSPKAPQKVKAAIASIPVGSFEAGASGRPGPAPRQPLEPGPVREPTA 1218
Query: 62 -EETVEDRVAPGAARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARA---------- 110
E +E + P A L E+ +R LPPPA E +SA+
Sbjct: 1219 PESELEGQPTPPAPP---PLPETWTPTARSSPP----LPPPAEERTSAKGPETMASKFPS 1271
Query: 111 -------------------SPPQRGPDPCLAPGARTVPSAKRLRSRKWPPQCTSRQHAVG 151
+PP P P +APG + S+ R R+ A G
Sbjct: 1272 SSSDWRVPGQGLENRGEPPTPPSPAPAPAVAPGGSSESSSGRAAG-----DTPERKEAAG 1326
Query: 152 SG 153
+G
Sbjct: 1327 TG 1328
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 37.4 bits (85), Expect = 0.016
Identities = 34/102 (33%), Positives = 43/102 (42%), Gaps = 22/102 (21%)
Query: 100 PPASELSSARASPPQRGPDPCLAPGARTVPSAKRLRSRKWPPQCTSRQHAVGSGSVSIRL 159
PPA + + PPQ GP P R P ++ + PPQ +QH L
Sbjct: 455 PPAQQRPPPQGGPPQPGPGP-----QRQGPPLQQ----RPPPQ--GQQH----------L 493
Query: 160 CGAGCERDSPIPLSSRSGTSHPEDFAEDAA-PWSGAENRSRP 200
G G SP+P S TS P+ A AA P G +SRP
Sbjct: 494 SGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRP 535
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 37.4 bits (85), Expect = 0.016
Identities = 34/102 (33%), Positives = 43/102 (42%), Gaps = 22/102 (21%)
Query: 100 PPASELSSARASPPQRGPDPCLAPGARTVPSAKRLRSRKWPPQCTSRQHAVGSGSVSIRL 159
PPA + + PPQ GP P R P ++ + PPQ +QH L
Sbjct: 455 PPAQQRPPPQGGPPQPGPGP-----QRQGPPLQQ----RPPPQ--GQQH----------L 493
Query: 160 CGAGCERDSPIPLSSRSGTSHPEDFAEDAA-PWSGAENRSRP 200
G G SP+P S TS P+ A AA P G +SRP
Sbjct: 494 SGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRP 535
>gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo
sapiens]
Length = 756
Score = 37.0 bits (84), Expect = 0.021
Identities = 32/103 (31%), Positives = 39/103 (37%), Gaps = 16/103 (15%)
Query: 22 PRATVPEQTQAAPVSSSPAAFQQR---GDPHPRQPHLTVPLRSEETVEDRVAPGAARNQG 78
P P+ AA ++ PA + G P P+ P L P APGAA + G
Sbjct: 19 PEPGGPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEP-----------APGAAADGG 67
Query: 79 DLEESGNLASR--GDAAPGKGLPPPASELSSARASPPQRGPDP 119
+G G PG PPP S ASP GP P
Sbjct: 68 ARWSAGPAPGLEGGPRDPGPSAPPPRSGPRGQLASPDAPGPGP 110
>gi|239741896 PREDICTED: hypothetical protein XP_002342335 [Homo
sapiens]
Length = 347
Score = 37.0 bits (84), Expect = 0.021
Identities = 59/224 (26%), Positives = 83/224 (37%), Gaps = 44/224 (19%)
Query: 9 SQTASRAFAGRRGP----RATVPEQTQAAPVSSSPAAFQQRGDPHPRQPH---------- 54
S T + A AGR P R + Q+ S PA +++ PR +
Sbjct: 113 SFTHAGARAGRASPEPCRRGAQSMEPQSRAWESQPADGRKQSREAPRSGYEGDGSGRGCR 172
Query: 55 ---LTVPLRSEETVED--RVAPGAARNQGDLEESGNLASRGDAAPGKGLPPPASELSSAR 109
T P + ++ + RV P Q E SG A G+ LP PA+ ++A
Sbjct: 173 DSGATYPAGARRSLAEAERVGPKPLPEQ---ERSG--------ASGRCLPAPAAFSAAAP 221
Query: 110 ASPPQ----RGPDPCLAPGARTVPSAKRLRSRKWPPQCTSRQHAVGSGSVSIRLCG--AG 163
A P G D +AP + P+ R RQ GSG+ G AG
Sbjct: 222 ARRPPACLPEGEDAPVAPPSSARPALPSFLLRPSGYLAARRQRGPGSGAAETGFRGSCAG 281
Query: 164 CERDSPIPLSSRSGTSHPEDFAE--DAAPWSGAENRSRPPRSCW 205
C R + + S GT+H A + P SG + PR W
Sbjct: 282 CGRG--LRIQSHPGTTHLHQGASFTSSEPLSGISS----PRGVW 319
>gi|126116565 MYC binding protein 2 [Homo sapiens]
Length = 4640
Score = 37.0 bits (84), Expect = 0.021
Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 22/192 (11%)
Query: 13 SRAFAGRRGPRATVPEQTQAAPVSSSPAAFQQRGDPHPRQPHLTVPLRSEETVE-DRVAP 71
SR A ++ PR T + + S AA + R D H R L+ + +T++ D P
Sbjct: 2711 SRTTADQKKPRGTESLSASESLILKSDAA-KLRSDSHSRS--LSPNHNTLQTLKSDGRMP 2767
Query: 72 GAARNQGDLEESGNLASRGDAAPGKGLPPPASELSSARASPPQRGPDPCLAPGARTVPSA 131
++R ES SR + K LP S S A +SP P P T P
Sbjct: 2768 SSSR-----AESPGPGSRLSSPKPKTLPANRSSPSGA-SSPRSSSPHDKNLPQKSTAPVK 2821
Query: 132 KRLRSRKWPPQCTSRQHAVGSGSVSIRLCGAGCERDSPI--PLSSRSGTSHPEDFAEDAA 189
+L PP+ S+ + ++R ++ P+ PL RS + P+ +D+
Sbjct: 2822 TKLD----PPRERSKSDSYTLDPDTLR------KKKMPLTEPLRGRSTSPKPKSVPKDST 2871
Query: 190 PWSGAENRSRPP 201
G+ENR+ P
Sbjct: 2872 DSPGSENRAPSP 2883
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.128 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,997,720
Number of Sequences: 37866
Number of extensions: 858378
Number of successful extensions: 4652
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 428
Number of HSP's that attempted gapping in prelim test: 4112
Number of HSP's gapped (non-prelim): 971
length of query: 301
length of database: 18,247,518
effective HSP length: 102
effective length of query: 199
effective length of database: 14,385,186
effective search space: 2862652014
effective search space used: 2862652014
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.