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Search of human proteins with 169171345
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169171345 PREDICTED: hypothetical protein [Homo sapiens]
(249 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169171345 PREDICTED: hypothetical protein [Homo sapiens] 525 e-149
gi|169172205 PREDICTED: hypothetical protein [Homo sapiens] 525 e-149
gi|169170949 PREDICTED: hypothetical protein [Homo sapiens] 525 e-149
gi|239508745 PREDICTED: hypothetical protein [Homo sapiens] 465 e-131
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 52 5e-07
gi|239754458 PREDICTED: hypothetical protein [Homo sapiens] 52 6e-07
gi|239749008 PREDICTED: hypothetical protein XP_002346879 [Homo ... 52 6e-07
gi|239743028 PREDICTED: hypothetical protein XP_002342721 [Homo ... 52 6e-07
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 49 3e-06
gi|163965366 nascent polypeptide-associated complex alpha subuni... 48 7e-06
gi|24308227 zinc finger protein 687 [Homo sapiens] 47 2e-05
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 47 2e-05
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 47 2e-05
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 47 2e-05
gi|110832843 TBP-associated factor 4 [Homo sapiens] 46 3e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 46 3e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 46 3e-05
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 46 3e-05
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 45 5e-05
gi|19924099 synapsin I isoform Ia [Homo sapiens] 45 5e-05
gi|19924097 synapsin I isoform Ib [Homo sapiens] 45 5e-05
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 45 5e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 45 6e-05
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 45 6e-05
gi|118498339 EMI domain containing 2 [Homo sapiens] 45 6e-05
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 44 1e-04
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 44 1e-04
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 44 1e-04
gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens] 44 1e-04
gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens] 44 1e-04
>gi|169171345 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 525 bits (1353), Expect = e-149
Identities = 249/249 (100%), Positives = 249/249 (100%)
Query: 1 MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG 60
MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG
Sbjct: 1 MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG 60
Query: 61 GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP 120
GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP
Sbjct: 61 GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP 120
Query: 121 RGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGC 180
RGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGC
Sbjct: 121 RGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGC 180
Query: 181 SRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKRKL 240
SRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKRKL
Sbjct: 181 SRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKRKL 240
Query: 241 VFTTHSKPE 249
VFTTHSKPE
Sbjct: 241 VFTTHSKPE 249
>gi|169172205 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 525 bits (1353), Expect = e-149
Identities = 249/249 (100%), Positives = 249/249 (100%)
Query: 1 MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG 60
MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG
Sbjct: 1 MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG 60
Query: 61 GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP 120
GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP
Sbjct: 61 GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP 120
Query: 121 RGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGC 180
RGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGC
Sbjct: 121 RGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGC 180
Query: 181 SRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKRKL 240
SRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKRKL
Sbjct: 181 SRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKRKL 240
Query: 241 VFTTHSKPE 249
VFTTHSKPE
Sbjct: 241 VFTTHSKPE 249
>gi|169170949 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 525 bits (1353), Expect = e-149
Identities = 249/249 (100%), Positives = 249/249 (100%)
Query: 1 MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG 60
MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG
Sbjct: 1 MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG 60
Query: 61 GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP 120
GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP
Sbjct: 61 GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP 120
Query: 121 RGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGC 180
RGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGC
Sbjct: 121 RGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGC 180
Query: 181 SRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKRKL 240
SRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKRKL
Sbjct: 181 SRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKRKL 240
Query: 241 VFTTHSKPE 249
VFTTHSKPE
Sbjct: 241 VFTTHSKPE 249
>gi|239508745 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 465 bits (1197), Expect = e-131
Identities = 228/251 (90%), Positives = 230/251 (91%), Gaps = 4/251 (1%)
Query: 1 MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG 60
MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG
Sbjct: 1 MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG 60
Query: 61 GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP 120
GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP
Sbjct: 61 GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP 120
Query: 121 RGRLPWVTGPRPAGSLPAAQ--SPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGR 178
RGRLPWVTGPRPAGSLPAAQ + A R GR R C + G A EAPQPTGGR
Sbjct: 121 RGRLPWVTGPRPAGSLPAAQFAAASGAARAGR--RRERACAGRSAGDAAGPEAPQPTGGR 178
Query: 179 GCSRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKR 238
GCSRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKR
Sbjct: 179 GCSRGSATASGVGGKAIKKAQRIPAELYLLYIHVNCCHHYCVQAQRMNWKRREGENNKKR 238
Query: 239 KLVFTTHSKPE 249
KLVFTTHSKPE
Sbjct: 239 KLVFTTHSKPE 249
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 52.0 bits (123), Expect = 5e-07
Identities = 49/166 (29%), Positives = 61/166 (36%), Gaps = 24/166 (14%)
Query: 2 GPGQHGVAPPPAGRERLQ-----NKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEA 56
G Q PPP G+ + N++ P P P +P P GG PG
Sbjct: 64 GGNQSQGPPPPPGKPEGRPPQGGNQSQGPPPHPGKPERPPPQGGNQSQGTPPPPGKPERP 123
Query: 57 GTRGGREGHRRLRQPPTPSAPP--------GSPLHEGFLLIALFPSSQNRHRSAGRGLAG 108
+GG + HR P P PP G P H G P N+ RSA R G
Sbjct: 124 PPQGGNQSHRPPPPPGKPERPPPQGGNQSQGPPPHPG-KPEGPPPQEGNKSRSA-RSPPG 181
Query: 109 RLQQV------RPGAAGPRGRLPWVTGPRPAGSLPAAQSPPPAERP 148
+ Q +P P G+ GP PAG P PPA +P
Sbjct: 182 KPQGPPQQEGNKPQGPPPPGK---PQGPPPAGGNPQQPQAPPAGKP 224
Score = 34.3 bits (77), Expect = 0.10
Identities = 42/181 (23%), Positives = 55/181 (30%), Gaps = 7/181 (3%)
Query: 11 PPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLRQ 70
P R + N+ P P P +P P GG PG +GG +
Sbjct: 36 PEGRRPQGGNQPQRPPPPPGKPQGPPPQGGNQSQGPPPPPGKPEGRPPQGGNQSQ---GP 92
Query: 71 PPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGP 130
PP P P P G P R +G G P G R P G
Sbjct: 93 PPHPGKPERPPPQGGNQSQGTPPPPGKPERPPPQG--GNQSHRPPPPPGKPERPPPQGGN 150
Query: 131 RPAGSLPAAQSP--PPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGCSRGSATAS 188
+ G P P PP + + + G +G + PQ G +G A
Sbjct: 151 QSQGPPPHPGKPEGPPPQEGNKSRSARSPPGKPQGPPQQEGNKPQGPPPPGKPQGPPPAG 210
Query: 189 G 189
G
Sbjct: 211 G 211
>gi|239754458 PREDICTED: hypothetical protein [Homo sapiens]
Length = 180
Score = 51.6 bits (122), Expect = 6e-07
Identities = 54/163 (33%), Positives = 68/163 (41%), Gaps = 21/163 (12%)
Query: 11 PPAGRERLQNKAWSPAP-APARPPLNQPPGGKALSTRALQPG--GALEAGTRGGREGHRR 67
PPA R RL + SP+P A A PPL Q P G PG G + +RG R G R
Sbjct: 19 PPAARGRLPGETLSPSPRAAALPPLQQRPPG--------APGALGRPKPVSRGPRAGLRE 70
Query: 68 LRQPPTPSAPPGSPLHEGFLLIALFPSSQNR-------HRSAGRGLAGRLQQVRPGAAGP 120
Q P P G+PL + A P S +R R + R + +V P P
Sbjct: 71 WPQQPWRPGPLGAPLQDR-APSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRP 129
Query: 121 RGRLPWVTGPRPA-GSLPAAQSPPPAERPGRDAAGARVCGTQR 162
G L PRP G+ P +PP RP V G++R
Sbjct: 130 AG-LHRSREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSER 171
>gi|239749008 PREDICTED: hypothetical protein XP_002346879 [Homo
sapiens]
Length = 180
Score = 51.6 bits (122), Expect = 6e-07
Identities = 54/163 (33%), Positives = 68/163 (41%), Gaps = 21/163 (12%)
Query: 11 PPAGRERLQNKAWSPAP-APARPPLNQPPGGKALSTRALQPG--GALEAGTRGGREGHRR 67
PPA R RL + SP+P A A PPL Q P G PG G + +RG R G R
Sbjct: 19 PPAARGRLPGETLSPSPRAAALPPLQQRPPG--------APGALGRPKPVSRGPRAGLRE 70
Query: 68 LRQPPTPSAPPGSPLHEGFLLIALFPSSQNR-------HRSAGRGLAGRLQQVRPGAAGP 120
Q P P G+PL + A P S +R R + R + +V P P
Sbjct: 71 WPQQPWRPGPLGAPLQDR-APSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRP 129
Query: 121 RGRLPWVTGPRPA-GSLPAAQSPPPAERPGRDAAGARVCGTQR 162
G L PRP G+ P +PP RP V G++R
Sbjct: 130 AG-LHRSREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSER 171
>gi|239743028 PREDICTED: hypothetical protein XP_002342721 [Homo
sapiens]
Length = 180
Score = 51.6 bits (122), Expect = 6e-07
Identities = 54/163 (33%), Positives = 68/163 (41%), Gaps = 21/163 (12%)
Query: 11 PPAGRERLQNKAWSPAP-APARPPLNQPPGGKALSTRALQPG--GALEAGTRGGREGHRR 67
PPA R RL + SP+P A A PPL Q P G PG G + +RG R G R
Sbjct: 19 PPAARGRLPGETLSPSPRAAALPPLQQRPPG--------APGALGRPKPVSRGPRAGLRE 70
Query: 68 LRQPPTPSAPPGSPLHEGFLLIALFPSSQNR-------HRSAGRGLAGRLQQVRPGAAGP 120
Q P P G+PL + A P S +R R + R + +V P P
Sbjct: 71 WPQQPWRPGPLGAPLQDR-APSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRP 129
Query: 121 RGRLPWVTGPRPA-GSLPAAQSPPPAERPGRDAAGARVCGTQR 162
G L PRP G+ P +PP RP V G++R
Sbjct: 130 AG-LHRSREPRPQDGTPPPVDTPPRTARPRPAFTPRPVVGSER 171
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 49.3 bits (116), Expect = 3e-06
Identities = 50/160 (31%), Positives = 61/160 (38%), Gaps = 21/160 (13%)
Query: 21 KAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLRQPPTPSAPPGS 80
K+ P P P QP G A R +PG A E +R R R R PP P PG+
Sbjct: 195 KSQPPLPQETAAPAPQP-GPTAPPARVREPGRA-EGASREPRLRSRAARPPPAPG--PGA 250
Query: 81 PLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQ 140
S +R R+AGR G G R P G R G+L A
Sbjct: 251 ------------LSRASRSRAAGRPGPG----FHGGEKAAAPRAPGGGGGRNPGALGRAA 294
Query: 141 SPPPAERPGRDAAGARVCGTQRGGCARAAEA-PQPTGGRG 179
P A + +G G +RG C RA + P T G G
Sbjct: 295 PPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNG 334
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 48.1 bits (113), Expect = 7e-06
Identities = 51/174 (29%), Positives = 61/174 (35%), Gaps = 11/174 (6%)
Query: 10 PPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALST--RALQPGGALEAGTRGG--REGH 65
P P G + W+P P A PP P GG A + A P A +GG
Sbjct: 948 PSPKGGPATPSPKWAPTPPAATPP--SPKGGPATPSPKGAPTPPAATPPSPKGGPATPSP 1005
Query: 66 RRLRQPP--TPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGR 123
+ PP TP +P GSP F A P + G A L + P P
Sbjct: 1006 KGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAP--TTPAAT 1063
Query: 124 LPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGG 177
LP G SL A +PP A P G + AA P P GG
Sbjct: 1064 LPSPKGGPATPSLKGAPTPPAATPPS-PKGGPATPSPKGAPMPPAATPPSPKGG 1116
Score = 33.1 bits (74), Expect = 0.23
Identities = 32/115 (27%), Positives = 44/115 (38%), Gaps = 18/115 (15%)
Query: 72 PTPSAPPGSPLHEGFLLIALFPSSQNRHRS--AGRGLAGRLQQVRPGAAGPRGRL--PWV 127
P P P +P + +++ SS + R+ A +G+ P + P+G P
Sbjct: 894 PFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGI--------PASPSPKGAPTPPAA 945
Query: 128 TGPRPAGSLPAAQSP-----PPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGG 177
T P P G PA SP PPA P G + AA P P GG
Sbjct: 946 TPPSPKGG-PATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGG 999
Score = 32.0 bits (71), Expect = 0.52
Identities = 56/218 (25%), Positives = 77/218 (35%), Gaps = 43/218 (19%)
Query: 9 APPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRL 68
A PP+ + L SP AP P P L+T + + A T
Sbjct: 1200 ATPPSPKGGLATP--SPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAAT---------- 1247
Query: 69 RQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAA-----GPRGR 123
PP+P P +P +G A P + G GLA + P A P+G
Sbjct: 1248 --PPSPKGGPATPPPKG----APTPPAATPPSLKG-GLATPPHKGAPNPAVVTPPSPKGG 1300
Query: 124 LPWVTGPRPAGSLPAAQSPPPAERP------GRDAAGARVCGTQRGGCARAAEAPQPTGG 177
P + P+ A + PAA P P P G A + +G A P GG
Sbjct: 1301 -PATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGG 1359
Query: 178 -------RGCSRGSATASGVGGKAI-----KKAQRIPA 203
G + +AT S GG A+ K+ IP+
Sbjct: 1360 PTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPS 1397
>gi|24308227 zinc finger protein 687 [Homo sapiens]
Length = 1237
Score = 47.0 bits (110), Expect = 2e-05
Identities = 45/143 (31%), Positives = 58/143 (40%), Gaps = 13/143 (9%)
Query: 12 PAGRERLQNKAWSPAPA-PARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLRQ 70
P G R+QN SP P+ P P PP G + ++ L+ G E
Sbjct: 117 PVGPHRMQNGFGSPEPSLPGTPHSPAPPSGGTWKEKGMEGKTPLDLFAHFGPEPGDH-SD 175
Query: 71 PPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGL--------AGRLQQVRPGAAGPRG 122
P PSAP SP EG L FPSS + G G+ G L+Q P+
Sbjct: 176 PLPPSAP--SPTREGALTPPPFPSSFELAQENGPGMQPPVSSPPLGALKQESCSPHHPQV 233
Query: 123 RLPWVTGPRP-AGSLPAAQSPPP 144
+G P A +PA+ SPPP
Sbjct: 234 LAQQGSGSSPKATDIPASASPPP 256
Score = 30.4 bits (67), Expect = 1.5
Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 13/88 (14%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPA------------RPPLNQPPGGKALSTRALQP 50
PG H PP+ + A +P P P+ +PP++ PP G AL + P
Sbjct: 170 PGDHSDPLPPSAPSPTREGALTPPPFPSSFELAQENGPGMQPPVSSPPLG-ALKQESCSP 228
Query: 51 GGALEAGTRGGREGHRRLRQPPTPSAPP 78
+G + P + S PP
Sbjct: 229 HHPQVLAQQGSGSSPKATDIPASASPPP 256
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 46.6 bits (109), Expect = 2e-05
Identities = 63/212 (29%), Positives = 78/212 (36%), Gaps = 42/212 (19%)
Query: 1 MGPGQHGVA--------PPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGG 52
+GP Q G P P GR + + P P RP +N G K +PG
Sbjct: 1191 LGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPG-RPGRPGMNGLKGEKG------EPGD 1243
Query: 53 A-LEAGTRG--GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGR 109
A L G RG G G PP P PPG+P+++ +F S R GL G
Sbjct: 1244 ASLGFGMRGMPGPPG------PPGPPGPPGTPVYDS----NVFAESS---RPGPPGLPG- 1289
Query: 110 LQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGR-----DAAGARVCGTQRGG 164
G GP+G V P P G P AE G DA G GG
Sbjct: 1290 ----NQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGG 1345
Query: 165 CARAAEAPQPTGGRGCSRGSATASGVGGKAIK 196
+ P P G G RG G G++I+
Sbjct: 1346 GFFGSSLPGPPGPPG-PRGYPGIPGPKGESIR 1376
Score = 46.2 bits (108), Expect = 3e-05
Identities = 70/247 (28%), Positives = 84/247 (34%), Gaps = 74/247 (29%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG-- 60
PG G+ P P A P P PP PPG R +PG E G G
Sbjct: 778 PGPPGL-PCPVSPLGPAGPALQTVPGPQGPP--GPPGRDGTPGRDGEPGDPGEDGKPGDT 834
Query: 61 ---------------GREGHRRL--RQPPTPSAPPGSP----LHEGFLLIALFPSSQNRH 99
G +G + R PP P PPG P H+ I +
Sbjct: 835 GPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDM-------- 886
Query: 100 RSAGRGLAGRLQQVR-----PGAAGPRGRLPWVTG------------PRPAG--SLPAAQ 140
G G G L+ +R PG GP G +P + G P PAG +P +
Sbjct: 887 --EGSGFGGDLEALRGPRGFPGPPGPPG-VPGLPGEPGRFGVNSSDVPGPAGLPGVPGRE 943
Query: 141 SPP-------PAERPGRDAAGARVCGTQRGGCARAAE--------APQPTGGRGCSRGSA 185
PP P PGR+ R Q+G A AP P G RG S G A
Sbjct: 944 GPPGFPGLPGPPGPPGREGPPGRT--GQKGSLGEAGAPGHKGSKGAPGPAGARGES-GLA 1000
Query: 186 TASGVGG 192
A G G
Sbjct: 1001 GAPGPAG 1007
Score = 38.9 bits (89), Expect = 0.004
Identities = 63/208 (30%), Positives = 74/208 (35%), Gaps = 41/208 (19%)
Query: 3 PGQHGVAPPPAGRERLQNK-AWSPAPAPARPPLNQ-PPGGKALSTRALQPGGA------- 53
PG G PP N A S P P P NQ PPG K PG
Sbjct: 1257 PGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDF 1316
Query: 54 --LEAGTRG--------GREGHR-----------RLRQPPTPSAP---PGSPLHEGFLLI 89
LEA +G G++G R L PP P P PG P +G +
Sbjct: 1317 LQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIR 1376
Query: 90 ALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGP-RPAGSLPAAQSPP-PAER 147
P G G GR Q PG GP G P GP R S+P PP P
Sbjct: 1377 GQ-PGPPGPQGPPGIGYEGR--QGPPGPPGPPGP-PSFPGPHRQTISVPGPPGPPGPPGP 1432
Query: 148 PGRDAA--GARVCGTQRGGCARAAEAPQ 173
PG A G R+ T++ + E P+
Sbjct: 1433 PGTMGASSGVRLWATRQAMLGQVHEVPE 1460
Score = 38.1 bits (87), Expect = 0.007
Identities = 62/215 (28%), Positives = 73/215 (33%), Gaps = 47/215 (21%)
Query: 3 PGQHGV----APPPAGRERLQNKAWSPA----PAPARPPLNQPPGGKALSTRALQPGGAL 54
PG+ GV P PAG + + P P P PP + P G+ +L GA
Sbjct: 920 PGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAP 979
Query: 55 ----------EAGTRG-----GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRH 99
AG RG G G PP P PPG L GF S
Sbjct: 980 GHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGF---DDMEGSGGPF 1036
Query: 100 RSAGRGLAGRLQQVRPGAAGPRGRLPWVTG-PRPAGSLPAAQSPPPAERPGRDAAGARVC 158
S R G Q PG G +G P V G P G + A P PGR+ +
Sbjct: 1037 WSTARSADG--PQGPPGLPGLKGD-PGVPGLPGAKGEVGADGVPGFPGLPGREG----IA 1089
Query: 159 GTQRGGCARAAEAPQPTGGRGC--SRGSATASGVG 191
G Q P G RG +G GVG
Sbjct: 1090 GPQ-----------GPKGDRGSRGEKGDPGKDGVG 1113
Score = 34.7 bits (78), Expect = 0.080
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
Query: 38 PGGKALST---RALQPGGALEAGTRGGREGHRRLRQPPTPSAPPGSPLHEG--FLLIALF 92
PG ++ST PGG ++ G G++G + PP + PPGSP G L +
Sbjct: 729 PGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVS 788
Query: 93 PSSQNRHRSAGRGLAGRLQQVRPGAAGPRG 122
P G AG Q PG GP G
Sbjct: 789 P----------LGPAGPALQTVPGPQGPPG 808
Score = 29.3 bits (64), Expect = 3.3
Identities = 30/114 (26%), Positives = 39/114 (34%), Gaps = 5/114 (4%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGR 62
PG G P P G + PP Q P G R PG G
Sbjct: 1353 PGPPG-PPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFP 1411
Query: 63 EGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPG 116
HR+ P P PPG P G + SS R + + + G++ +V G
Sbjct: 1412 GPHRQTISVPGPPGPPGPPGPPG----TMGASSGVRLWATRQAMLGQVHEVPEG 1461
Score = 27.7 bits (60), Expect = 9.7
Identities = 36/151 (23%), Positives = 48/151 (31%), Gaps = 21/151 (13%)
Query: 1 MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG 60
+G G G+ PP P P PP P + + +PG G +G
Sbjct: 1246 LGFGMRGMPGPPG------------PPGPPGPP-GTPVYDSNVFAESSRPGPPGLPGNQG 1292
Query: 61 GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGR-------GLAGRLQQV 113
G + + P PPG + L A + AG+ G G
Sbjct: 1293 P-PGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSS 1351
Query: 114 RPGAAGPRGRLPWVTGPRPAGSLPAAQSPPP 144
PG GP G + P P G Q PP
Sbjct: 1352 LPGPPGPPGPRGYPGIPGPKGESIRGQPGPP 1382
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 46.6 bits (109), Expect = 2e-05
Identities = 63/212 (29%), Positives = 78/212 (36%), Gaps = 42/212 (19%)
Query: 1 MGPGQHGVA--------PPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGG 52
+GP Q G P P GR + + P P RP +N G K +PG
Sbjct: 776 LGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPG-RPGRPGMNGLKGEKG------EPGD 828
Query: 53 A-LEAGTRG--GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGR 109
A L G RG G G PP P PPG+P+++ +F S R GL G
Sbjct: 829 ASLGFGMRGMPGPPG------PPGPPGPPGTPVYDS----NVFAESS---RPGPPGLPG- 874
Query: 110 LQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGR-----DAAGARVCGTQRGG 164
G GP+G V P P G P AE G DA G GG
Sbjct: 875 ----NQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGG 930
Query: 165 CARAAEAPQPTGGRGCSRGSATASGVGGKAIK 196
+ P P G G RG G G++I+
Sbjct: 931 GFFGSSLPGPPGPPG-PRGYPGIPGPKGESIR 961
Score = 46.2 bits (108), Expect = 3e-05
Identities = 70/247 (28%), Positives = 84/247 (34%), Gaps = 74/247 (29%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG-- 60
PG G+ P P A P P PP PPG R +PG E G G
Sbjct: 363 PGPPGL-PCPVSPLGPAGPALQTVPGPQGPP--GPPGRDGTPGRDGEPGDPGEDGKPGDT 419
Query: 61 ---------------GREGHRRL--RQPPTPSAPPGSP----LHEGFLLIALFPSSQNRH 99
G +G + R PP P PPG P H+ I +
Sbjct: 420 GPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDM-------- 471
Query: 100 RSAGRGLAGRLQQVR-----PGAAGPRGRLPWVTG------------PRPAG--SLPAAQ 140
G G G L+ +R PG GP G +P + G P PAG +P +
Sbjct: 472 --EGSGFGGDLEALRGPRGFPGPPGPPG-VPGLPGEPGRFGVNSSDVPGPAGLPGVPGRE 528
Query: 141 SPP-------PAERPGRDAAGARVCGTQRGGCARAAE--------APQPTGGRGCSRGSA 185
PP P PGR+ R Q+G A AP P G RG S G A
Sbjct: 529 GPPGFPGLPGPPGPPGREGPPGRT--GQKGSLGEAGAPGHKGSKGAPGPAGARGES-GLA 585
Query: 186 TASGVGG 192
A G G
Sbjct: 586 GAPGPAG 592
Score = 38.9 bits (89), Expect = 0.004
Identities = 63/208 (30%), Positives = 74/208 (35%), Gaps = 41/208 (19%)
Query: 3 PGQHGVAPPPAGRERLQNK-AWSPAPAPARPPLNQ-PPGGKALSTRALQPGGA------- 53
PG G PP N A S P P P NQ PPG K PG
Sbjct: 842 PGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDF 901
Query: 54 --LEAGTRG--------GREGHR-----------RLRQPPTPSAP---PGSPLHEGFLLI 89
LEA +G G++G R L PP P P PG P +G +
Sbjct: 902 LQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIR 961
Query: 90 ALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGP-RPAGSLPAAQSPP-PAER 147
P G G GR Q PG GP G P GP R S+P PP P
Sbjct: 962 GQ-PGPPGPQGPPGIGYEGR--QGPPGPPGPPGP-PSFPGPHRQTISVPGPPGPPGPPGP 1017
Query: 148 PGRDAA--GARVCGTQRGGCARAAEAPQ 173
PG A G R+ T++ + E P+
Sbjct: 1018 PGTMGASSGVRLWATRQAMLGQVHEVPE 1045
Score = 38.1 bits (87), Expect = 0.007
Identities = 62/215 (28%), Positives = 73/215 (33%), Gaps = 47/215 (21%)
Query: 3 PGQHGV----APPPAGRERLQNKAWSPA----PAPARPPLNQPPGGKALSTRALQPGGAL 54
PG+ GV P PAG + + P P P PP + P G+ +L GA
Sbjct: 505 PGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAP 564
Query: 55 ----------EAGTRG-----GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRH 99
AG RG G G PP P PPG L GF S
Sbjct: 565 GHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGF---DDMEGSGGPF 621
Query: 100 RSAGRGLAGRLQQVRPGAAGPRGRLPWVTG-PRPAGSLPAAQSPPPAERPGRDAAGARVC 158
S R G Q PG G +G P V G P G + A P PGR+ +
Sbjct: 622 WSTARSADG--PQGPPGLPGLKGD-PGVPGLPGAKGEVGADGVPGFPGLPGREG----IA 674
Query: 159 GTQRGGCARAAEAPQPTGGRGC--SRGSATASGVG 191
G Q P G RG +G GVG
Sbjct: 675 GPQ-----------GPKGDRGSRGEKGDPGKDGVG 698
Score = 34.7 bits (78), Expect = 0.080
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
Query: 38 PGGKALST---RALQPGGALEAGTRGGREGHRRLRQPPTPSAPPGSPLHEG--FLLIALF 92
PG ++ST PGG ++ G G++G + PP + PPGSP G L +
Sbjct: 314 PGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVS 373
Query: 93 PSSQNRHRSAGRGLAGRLQQVRPGAAGPRG 122
P G AG Q PG GP G
Sbjct: 374 P----------LGPAGPALQTVPGPQGPPG 393
Score = 29.3 bits (64), Expect = 3.3
Identities = 30/114 (26%), Positives = 39/114 (34%), Gaps = 5/114 (4%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGR 62
PG G P P G + PP Q P G R PG G
Sbjct: 938 PGPPG-PPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFP 996
Query: 63 EGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPG 116
HR+ P P PPG P G + SS R + + + G++ +V G
Sbjct: 997 GPHRQTISVPGPPGPPGPPGPPG----TMGASSGVRLWATRQAMLGQVHEVPEG 1046
Score = 27.7 bits (60), Expect = 9.7
Identities = 36/151 (23%), Positives = 48/151 (31%), Gaps = 21/151 (13%)
Query: 1 MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG 60
+G G G+ PP P P PP P + + +PG G +G
Sbjct: 831 LGFGMRGMPGPPG------------PPGPPGPP-GTPVYDSNVFAESSRPGPPGLPGNQG 877
Query: 61 GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGR-------GLAGRLQQV 113
G + + P PPG + L A + AG+ G G
Sbjct: 878 P-PGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSS 936
Query: 114 RPGAAGPRGRLPWVTGPRPAGSLPAAQSPPP 144
PG GP G + P P G Q PP
Sbjct: 937 LPGPPGPPGPRGYPGIPGPKGESIRGQPGPP 967
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 46.6 bits (109), Expect = 2e-05
Identities = 63/212 (29%), Positives = 78/212 (36%), Gaps = 42/212 (19%)
Query: 1 MGPGQHGVA--------PPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGG 52
+GP Q G P P GR + + P P RP +N G K +PG
Sbjct: 956 LGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPG-RPGRPGMNGLKGEKG------EPGD 1008
Query: 53 A-LEAGTRG--GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGR 109
A L G RG G G PP P PPG+P+++ +F S R GL G
Sbjct: 1009 ASLGFGMRGMPGPPG------PPGPPGPPGTPVYDS----NVFAESS---RPGPPGLPG- 1054
Query: 110 LQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGR-----DAAGARVCGTQRGG 164
G GP+G V P P G P AE G DA G GG
Sbjct: 1055 ----NQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGG 1110
Query: 165 CARAAEAPQPTGGRGCSRGSATASGVGGKAIK 196
+ P P G G RG G G++I+
Sbjct: 1111 GFFGSSLPGPPGPPG-PRGYPGIPGPKGESIR 1141
Score = 46.2 bits (108), Expect = 3e-05
Identities = 70/247 (28%), Positives = 84/247 (34%), Gaps = 74/247 (29%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG-- 60
PG G+ P P A P P PP PPG R +PG E G G
Sbjct: 543 PGPPGL-PCPVSPLGPAGPALQTVPGPQGPP--GPPGRDGTPGRDGEPGDPGEDGKPGDT 599
Query: 61 ---------------GREGHRRL--RQPPTPSAPPGSP----LHEGFLLIALFPSSQNRH 99
G +G + R PP P PPG P H+ I +
Sbjct: 600 GPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDM-------- 651
Query: 100 RSAGRGLAGRLQQVR-----PGAAGPRGRLPWVTG------------PRPAG--SLPAAQ 140
G G G L+ +R PG GP G +P + G P PAG +P +
Sbjct: 652 --EGSGFGGDLEALRGPRGFPGPPGPPG-VPGLPGEPGRFGVNSSDVPGPAGLPGVPGRE 708
Query: 141 SPP-------PAERPGRDAAGARVCGTQRGGCARAAE--------APQPTGGRGCSRGSA 185
PP P PGR+ R Q+G A AP P G RG S G A
Sbjct: 709 GPPGFPGLPGPPGPPGREGPPGRT--GQKGSLGEAGAPGHKGSKGAPGPAGARGES-GLA 765
Query: 186 TASGVGG 192
A G G
Sbjct: 766 GAPGPAG 772
Score = 38.9 bits (89), Expect = 0.004
Identities = 63/208 (30%), Positives = 74/208 (35%), Gaps = 41/208 (19%)
Query: 3 PGQHGVAPPPAGRERLQNK-AWSPAPAPARPPLNQ-PPGGKALSTRALQPGGA------- 53
PG G PP N A S P P P NQ PPG K PG
Sbjct: 1022 PGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDF 1081
Query: 54 --LEAGTRG--------GREGHR-----------RLRQPPTPSAP---PGSPLHEGFLLI 89
LEA +G G++G R L PP P P PG P +G +
Sbjct: 1082 LQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIR 1141
Query: 90 ALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGP-RPAGSLPAAQSPP-PAER 147
P G G GR Q PG GP G P GP R S+P PP P
Sbjct: 1142 GQ-PGPPGPQGPPGIGYEGR--QGPPGPPGPPGP-PSFPGPHRQTISVPGPPGPPGPPGP 1197
Query: 148 PGRDAA--GARVCGTQRGGCARAAEAPQ 173
PG A G R+ T++ + E P+
Sbjct: 1198 PGTMGASSGVRLWATRQAMLGQVHEVPE 1225
Score = 38.1 bits (87), Expect = 0.007
Identities = 62/215 (28%), Positives = 73/215 (33%), Gaps = 47/215 (21%)
Query: 3 PGQHGV----APPPAGRERLQNKAWSPA----PAPARPPLNQPPGGKALSTRALQPGGAL 54
PG+ GV P PAG + + P P P PP + P G+ +L GA
Sbjct: 685 PGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAP 744
Query: 55 ----------EAGTRG-----GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRH 99
AG RG G G PP P PPG L GF S
Sbjct: 745 GHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGF---DDMEGSGGPF 801
Query: 100 RSAGRGLAGRLQQVRPGAAGPRGRLPWVTG-PRPAGSLPAAQSPPPAERPGRDAAGARVC 158
S R G Q PG G +G P V G P G + A P PGR+ +
Sbjct: 802 WSTARSADG--PQGPPGLPGLKGD-PGVPGLPGAKGEVGADGVPGFPGLPGREG----IA 854
Query: 159 GTQRGGCARAAEAPQPTGGRGC--SRGSATASGVG 191
G Q P G RG +G GVG
Sbjct: 855 GPQ-----------GPKGDRGSRGEKGDPGKDGVG 878
Score = 34.7 bits (78), Expect = 0.080
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
Query: 38 PGGKALST---RALQPGGALEAGTRGGREGHRRLRQPPTPSAPPGSPLHEG--FLLIALF 92
PG ++ST PGG ++ G G++G + PP + PPGSP G L +
Sbjct: 494 PGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVS 553
Query: 93 PSSQNRHRSAGRGLAGRLQQVRPGAAGPRG 122
P G AG Q PG GP G
Sbjct: 554 P----------LGPAGPALQTVPGPQGPPG 573
Score = 29.3 bits (64), Expect = 3.3
Identities = 30/114 (26%), Positives = 39/114 (34%), Gaps = 5/114 (4%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGR 62
PG G P P G + PP Q P G R PG G
Sbjct: 1118 PGPPG-PPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFP 1176
Query: 63 EGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPG 116
HR+ P P PPG P G + SS R + + + G++ +V G
Sbjct: 1177 GPHRQTISVPGPPGPPGPPGPPG----TMGASSGVRLWATRQAMLGQVHEVPEG 1226
Score = 27.7 bits (60), Expect = 9.7
Identities = 36/151 (23%), Positives = 48/151 (31%), Gaps = 21/151 (13%)
Query: 1 MGPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG 60
+G G G+ PP P P PP P + + +PG G +G
Sbjct: 1011 LGFGMRGMPGPPG------------PPGPPGPP-GTPVYDSNVFAESSRPGPPGLPGNQG 1057
Query: 61 GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGR-------GLAGRLQQV 113
G + + P PPG + L A + AG+ G G
Sbjct: 1058 P-PGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSS 1116
Query: 114 RPGAAGPRGRLPWVTGPRPAGSLPAAQSPPP 144
PG GP G + P P G Q PP
Sbjct: 1117 LPGPPGPPGPRGYPGIPGPKGESIRGQPGPP 1147
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 46.2 bits (108), Expect = 3e-05
Identities = 69/257 (26%), Positives = 79/257 (30%), Gaps = 69/257 (26%)
Query: 10 PPPAGRER------------LQNKAWSPA-PAPARPPLNQPPGGKALSTRALQPGGALEA 56
PPPAGR R + PA PAP L PP G A S + A+ A
Sbjct: 89 PPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAA 148
Query: 57 GTRGGREGHRRLRQP----------------PTPSAPPGSPLHEGFLLIALFPSSQ-NRH 99
G G + P P P PG P G ++ N H
Sbjct: 149 GPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSH 208
Query: 100 RSAG-------RGLAGRLQQVRPGAAGPRGRLPWVTGPR-------------PAGSLPAA 139
+A G A L +P A G + P G PA + PAA
Sbjct: 209 HAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAA 268
Query: 140 QSPPP-------AERPGRDAAGARVC-------GTQRGGCARAAEAPQPTGGRGCSRGSA 185
PPP A PG A Q GG A AA AP P G G A
Sbjct: 269 APPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAG-----GPA 323
Query: 186 TASGVGGKAIKKAQRIP 202
SG G A P
Sbjct: 324 GVSGQPGPGAAAAAPAP 340
Score = 38.5 bits (88), Expect = 0.006
Identities = 55/202 (27%), Positives = 67/202 (33%), Gaps = 60/202 (29%)
Query: 7 GVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHR 66
G A PPA A +PA A PP PP L+ P G
Sbjct: 245 GAAAPPAPAAPSPPAAPAPAAPAAAPP-PPPPAPATLARPPGHPAG-------------- 289
Query: 67 RLRQPPT--PSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRL 124
PPT P+ PP + G G AG P A GP G +
Sbjct: 290 ----PPTAAPAVPPPAAAQNG-------------------GSAGAAPAPAPAAGGPAG-V 325
Query: 125 PWVTGPRPAGSLPA----AQSP-------PPAER------PGRDAAGARVCGTQRGGCAR 167
GP A + PA A+SP PPA + P AA + T +G
Sbjct: 326 SGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPS 385
Query: 168 AAEAPQPTGG--RGCSRGSATA 187
A P P G G +G+A A
Sbjct: 386 PAAVPPPAPGTPTGLPKGAAGA 407
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 45.8 bits (107), Expect = 3e-05
Identities = 64/209 (30%), Positives = 74/209 (35%), Gaps = 22/209 (10%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG-- 60
PG G P AGR +P P P P + G K + PG A E G +G
Sbjct: 893 PGATGF-PGAAGRVGPPGSNGNPGP-PGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPA 950
Query: 61 ---GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGR-GLAGRL-QQVRP 115
G +G P PPG G I P + G G +G +Q P
Sbjct: 951 GPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAP 1010
Query: 116 GAAGPRGRLPWVTGPR----PAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEA 171
GA+G RG P GP PAG SP PGRD A G A A
Sbjct: 1011 GASGDRGP-PGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGA 1069
Query: 172 PQPTG--------GRGCSRGSATASGVGG 192
P P G G+ RG A A G G
Sbjct: 1070 PGPPGSPGPAGPTGKQGDRGEAGAQGPMG 1098
Score = 42.4 bits (98), Expect = 4e-04
Identities = 66/218 (30%), Positives = 77/218 (35%), Gaps = 46/218 (21%)
Query: 3 PGQHGVAPPP-AGRERLQNKAWSPAPA---PARPPLNQPPGGKALSTRALQPGGALEAGT 58
PGQ G+A P A ER + P A P RP PG + L+ R PG A G
Sbjct: 518 PGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGR---PGDAGPQGK 574
Query: 59 RG--GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG------------- 103
G G G PP P G P GF P + + G
Sbjct: 575 VGPSGAPGEDGRPGPPGPQGARGQPGVMGF------PGPKGANGEPGKAGEKGLPGAPGL 628
Query: 104 RGLAGRLQQVR----PGAAGPRGRLPWVTGPRPAG--SLPAAQSPP-PAERPGRDAAGAR 156
RGL G+ + PG AGP G P P+G LP PP +PG
Sbjct: 629 RGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGV--- 685
Query: 157 VCGTQRGGCARAAEAPQPTGGRGC--SRGSATASGVGG 192
G A A P G RG RGS A G+ G
Sbjct: 686 ------PGEAGAPGLVGPRGERGFPGERGSPGAQGLQG 717
Score = 39.7 bits (91), Expect = 0.002
Identities = 55/189 (29%), Positives = 62/189 (32%), Gaps = 40/189 (21%)
Query: 26 APAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLRQPPTPSAPPGSPLHEG 85
A PA PP Q P G L + G A AG +G R P G+P +G
Sbjct: 733 ASGPAGPPGAQGPPG--LQGMPGERGAAGIAGPKGDRGDVGE-------KGPEGAPGKDG 783
Query: 86 FLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQSP--- 142
GRGL G + PG AG G V P PAGS A +P
Sbjct: 784 -----------------GRGLTGPIGP--PGPAGANGEKGEVGPPGPAGSAGARGAPGER 824
Query: 143 ----PP-----AERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGCSRGSATASGVGGK 193
PP A PG D G A AP P G G G K
Sbjct: 825 GETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPK 884
Query: 194 AIKKAQRIP 202
+ AQ P
Sbjct: 885 GARGAQGPP 893
Score = 38.1 bits (87), Expect = 0.007
Identities = 55/193 (28%), Positives = 72/193 (37%), Gaps = 26/193 (13%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGR 62
PG G A AG ++ ++ SP + P+ G + L + G A AG RG
Sbjct: 293 PGLDG-AKGEAGAPGVKGESGSPGENGSPGPM----GPRGLPGERGRTGPAGAAGARGN- 346
Query: 63 EGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG-RGLAGRLQQVRPGAAGPR 121
+G PP P P G P FP + AG G G GA GPR
Sbjct: 347 DGQPGPAGPPGPVGPAGGPG---------FPGAPGAKGEAGPTGARGP-----EGAQGPR 392
Query: 122 GRLPWVTGPRPAGSLPAAQSPPPAERPG-RDAAGA-RVCGTQRGGCARAAEAPQPTGGRG 179
G P PAG A+ +P PG + +AGA + G R PQ G
Sbjct: 393 GEPGTPGSPGPAG---ASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPL 449
Query: 180 CSRGSATASGVGG 192
+G G+ G
Sbjct: 450 GPKGQTGEPGIAG 462
Score = 34.7 bits (78), Expect = 0.080
Identities = 61/232 (26%), Positives = 82/232 (35%), Gaps = 49/232 (21%)
Query: 3 PGQHGVAPPPA--GRERLQNKAWSP--APAPARPPLNQPPGGKALSTRALQPGGALEAGT 58
PG G + P G + A +P A AP P PPG + +T L P G
Sbjct: 401 PGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQG-ATGPLGPKGQTGEPG 459
Query: 59 RGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRP--- 115
G +G + + P P+ P G+P P+ + R A RG G + + P
Sbjct: 460 IAGFKGEQGPKGEPGPAGPQGAP----------GPAGEEGKRGA-RGEPGGVGPIGPPGE 508
Query: 116 -------------GAAGPRG----RLP-WVTGPRPAGSLPAAQSPPP-------AERPGR 150
G AGP+G R P + GP+ A P P RPG
Sbjct: 509 RGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGD 568
Query: 151 DAAGARVCGTQRGGCARAAEAPQPTGGRGCS-----RGSATASGVGGKAIKK 197
+V + G P P G RG G A+G GKA +K
Sbjct: 569 AGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEK 620
Score = 32.0 bits (71), Expect = 0.52
Identities = 43/161 (26%), Positives = 55/161 (34%), Gaps = 25/161 (15%)
Query: 26 APAPARPPLNQPPGGKALSTRALQPGGALEAGTRG--GREGHRRLRQPPTPSAPPGSPLH 83
+P PA P Q G+A + + P G AG RG G +G R + G H
Sbjct: 1075 SPGPAGPTGKQGDRGEAGAQGPMGPSG--PAGARGIQGPQGPRGDKGEAGEPGERGLKGH 1132
Query: 84 EGFLLIALFPS----SQNRHRSAGRGLAGRLQQVRP----------------GAAGPRGR 123
GF + P S ++ S G +G P G GPRGR
Sbjct: 1133 RGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGR 1192
Query: 124 LPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGG 164
TGP P PP PG D + G + G
Sbjct: 1193 -SGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKG 1232
Score = 31.6 bits (70), Expect = 0.67
Identities = 50/178 (28%), Positives = 62/178 (34%), Gaps = 21/178 (11%)
Query: 29 PARPPLNQPPGGKALSTRALQPGGALEA-GTRG--GREGHRRLRQPPTPSAPPGSPLHEG 85
P PP Q P G+ G A G RG G G PP P PPG P G
Sbjct: 118 PKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGG 177
Query: 86 FLLIALFPSSQNRHRSAGRG-LAGRLQQVRP-------GAAGPRG--RLPWVTG-PRPAG 134
+ + A G + G + + P GA GP+G P G P +G
Sbjct: 178 NFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSG 237
Query: 135 SLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGCSRGSATASGVGG 192
+ P P +PG D + G A P P G RG G+ GV G
Sbjct: 238 PMGPRGPPGPPGKPGDDGEAG------KPGKAGERGPPGPQGARGFP-GTPGLPGVKG 288
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 45.8 bits (107), Expect = 3e-05
Identities = 64/209 (30%), Positives = 74/209 (35%), Gaps = 22/209 (10%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG-- 60
PG G P AGR +P P P P + G K + PG A E G +G
Sbjct: 824 PGATGF-PGAAGRVGPPGSNGNPGP-PGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPA 881
Query: 61 ---GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGR-GLAGRL-QQVRP 115
G +G P PPG G I P + G G +G +Q P
Sbjct: 882 GPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAP 941
Query: 116 GAAGPRGRLPWVTGPR----PAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEA 171
GA+G RG P GP PAG SP PGRD A G A A
Sbjct: 942 GASGDRGP-PGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGA 1000
Query: 172 PQPTG--------GRGCSRGSATASGVGG 192
P P G G+ RG A A G G
Sbjct: 1001 PGPPGSPGPAGPTGKQGDRGEAGAQGPMG 1029
Score = 42.4 bits (98), Expect = 4e-04
Identities = 66/218 (30%), Positives = 77/218 (35%), Gaps = 46/218 (21%)
Query: 3 PGQHGVAPPP-AGRERLQNKAWSPAPA---PARPPLNQPPGGKALSTRALQPGGALEAGT 58
PGQ G+A P A ER + P A P RP PG + L+ R PG A G
Sbjct: 449 PGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGR---PGDAGPQGK 505
Query: 59 RG--GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG------------- 103
G G G PP P G P GF P + + G
Sbjct: 506 VGPSGAPGEDGRPGPPGPQGARGQPGVMGF------PGPKGANGEPGKAGEKGLPGAPGL 559
Query: 104 RGLAGRLQQVR----PGAAGPRGRLPWVTGPRPAG--SLPAAQSPP-PAERPGRDAAGAR 156
RGL G+ + PG AGP G P P+G LP PP +PG
Sbjct: 560 RGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGV--- 616
Query: 157 VCGTQRGGCARAAEAPQPTGGRGC--SRGSATASGVGG 192
G A A P G RG RGS A G+ G
Sbjct: 617 ------PGEAGAPGLVGPRGERGFPGERGSPGAQGLQG 648
Score = 39.7 bits (91), Expect = 0.002
Identities = 55/189 (29%), Positives = 62/189 (32%), Gaps = 40/189 (21%)
Query: 26 APAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLRQPPTPSAPPGSPLHEG 85
A PA PP Q P G L + G A AG +G R P G+P +G
Sbjct: 664 ASGPAGPPGAQGPPG--LQGMPGERGAAGIAGPKGDRGDVGE-------KGPEGAPGKDG 714
Query: 86 FLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQSP--- 142
GRGL G + PG AG G V P PAGS A +P
Sbjct: 715 -----------------GRGLTGPIGP--PGPAGANGEKGEVGPPGPAGSAGARGAPGER 755
Query: 143 ----PP-----AERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGCSRGSATASGVGGK 193
PP A PG D G A AP P G G G K
Sbjct: 756 GETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPK 815
Query: 194 AIKKAQRIP 202
+ AQ P
Sbjct: 816 GARGAQGPP 824
Score = 38.1 bits (87), Expect = 0.007
Identities = 55/193 (28%), Positives = 72/193 (37%), Gaps = 26/193 (13%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGR 62
PG G A AG ++ ++ SP + P+ G + L + G A AG RG
Sbjct: 224 PGLDG-AKGEAGAPGVKGESGSPGENGSPGPM----GPRGLPGERGRTGPAGAAGARGN- 277
Query: 63 EGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG-RGLAGRLQQVRPGAAGPR 121
+G PP P P G P FP + AG G G GA GPR
Sbjct: 278 DGQPGPAGPPGPVGPAGGPG---------FPGAPGAKGEAGPTGARGP-----EGAQGPR 323
Query: 122 GRLPWVTGPRPAGSLPAAQSPPPAERPG-RDAAGA-RVCGTQRGGCARAAEAPQPTGGRG 179
G P PAG A+ +P PG + +AGA + G R PQ G
Sbjct: 324 GEPGTPGSPGPAG---ASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPL 380
Query: 180 CSRGSATASGVGG 192
+G G+ G
Sbjct: 381 GPKGQTGEPGIAG 393
Score = 34.7 bits (78), Expect = 0.080
Identities = 61/232 (26%), Positives = 82/232 (35%), Gaps = 49/232 (21%)
Query: 3 PGQHGVAPPPA--GRERLQNKAWSP--APAPARPPLNQPPGGKALSTRALQPGGALEAGT 58
PG G + P G + A +P A AP P PPG + +T L P G
Sbjct: 332 PGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQG-ATGPLGPKGQTGEPG 390
Query: 59 RGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRP--- 115
G +G + + P P+ P G+P P+ + R A RG G + + P
Sbjct: 391 IAGFKGEQGPKGEPGPAGPQGAP----------GPAGEEGKRGA-RGEPGGVGPIGPPGE 439
Query: 116 -------------GAAGPRG----RLP-WVTGPRPAGSLPAAQSPPP-------AERPGR 150
G AGP+G R P + GP+ A P P RPG
Sbjct: 440 RGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGD 499
Query: 151 DAAGARVCGTQRGGCARAAEAPQPTGGRGCS-----RGSATASGVGGKAIKK 197
+V + G P P G RG G A+G GKA +K
Sbjct: 500 AGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEK 551
Score = 32.0 bits (71), Expect = 0.52
Identities = 43/161 (26%), Positives = 55/161 (34%), Gaps = 25/161 (15%)
Query: 26 APAPARPPLNQPPGGKALSTRALQPGGALEAGTRG--GREGHRRLRQPPTPSAPPGSPLH 83
+P PA P Q G+A + + P G AG RG G +G R + G H
Sbjct: 1006 SPGPAGPTGKQGDRGEAGAQGPMGPSG--PAGARGIQGPQGPRGDKGEAGEPGERGLKGH 1063
Query: 84 EGFLLIALFPS----SQNRHRSAGRGLAGRLQQVRP----------------GAAGPRGR 123
GF + P S ++ S G +G P G GPRGR
Sbjct: 1064 RGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGR 1123
Query: 124 LPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGG 164
TGP P PP PG D + G + G
Sbjct: 1124 -SGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKG 1163
Score = 31.6 bits (70), Expect = 0.67
Identities = 50/178 (28%), Positives = 62/178 (34%), Gaps = 21/178 (11%)
Query: 29 PARPPLNQPPGGKALSTRALQPGGALEA-GTRG--GREGHRRLRQPPTPSAPPGSPLHEG 85
P PP Q P G+ G A G RG G G PP P PPG P G
Sbjct: 49 PKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGG 108
Query: 86 FLLIALFPSSQNRHRSAGRG-LAGRLQQVRP-------GAAGPRG--RLPWVTG-PRPAG 134
+ + A G + G + + P GA GP+G P G P +G
Sbjct: 109 NFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSG 168
Query: 135 SLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGCSRGSATASGVGG 192
+ P P +PG D + G A P P G RG G+ GV G
Sbjct: 169 PMGPRGPPGPPGKPGDDGEAG------KPGKAGERGPPGPQGARGFP-GTPGLPGVKG 219
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 45.8 bits (107), Expect = 3e-05
Identities = 40/139 (28%), Positives = 51/139 (36%), Gaps = 16/139 (11%)
Query: 10 PPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLR 69
PPP G N++ P P P +P P GG +PG +GG +
Sbjct: 165 PPPQGG----NQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQ---G 217
Query: 70 QPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTG 129
PP P P G P G P H +G + + +P P GR G
Sbjct: 218 PPPRPGKPEGPPSQGGNK-----PQGPPPHPGKPQGPPPQ-EGNKPQRPPPPGR---PQG 268
Query: 130 PRPAGSLPAAQSPPPAERP 148
P P G P PPPA +P
Sbjct: 269 PPPPGGNPQQPLPPPAGKP 287
Score = 45.1 bits (105), Expect = 6e-05
Identities = 41/145 (28%), Positives = 49/145 (33%), Gaps = 25/145 (17%)
Query: 10 PPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLR 69
PPP G N++ P P P +P P GG +PG ++GG +
Sbjct: 186 PPPQGG----NQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQG--- 238
Query: 70 QPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTG 129
PP P P G P EG + R GR P P G P
Sbjct: 239 PPPHPGKPQGPPPQEG--------NKPQRPPPPGR----------PQGPPPPGGNPQQPL 280
Query: 130 PRPAGSLPAAQSPPPAERPGRDAAG 154
P PAG PP RP R G
Sbjct: 281 PPPAGKPQGPPPPPQGGRPHRPPQG 305
Score = 43.1 bits (100), Expect = 2e-04
Identities = 51/184 (27%), Positives = 63/184 (34%), Gaps = 22/184 (11%)
Query: 2 GPGQHGVAPPPAGRERLQ-----NKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEA 56
G Q PPP G+ + N++ P P P +P P GG +PG
Sbjct: 43 GGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGQ 102
Query: 57 GTRGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPG 116
+GG + PP P P G P G SQ G+ G Q
Sbjct: 103 PPQGGNQSQ---GPPPRPGKPEGPPPQGG-------NQSQGPPPRPGKP-EGPPPQGGNQ 151
Query: 117 AAGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGG---CARAAEAPQ 173
+ GP R GP P G +Q PPP PG+ G Q G E P
Sbjct: 152 SQGPPPRPGKPEGPPPQGG-NQSQGPPP--HPGKPEGPPPQGGNQSQGPPPRPGKPEGPP 208
Query: 174 PTGG 177
P GG
Sbjct: 209 PQGG 212
Score = 40.8 bits (94), Expect = 0.001
Identities = 44/155 (28%), Positives = 54/155 (34%), Gaps = 18/155 (11%)
Query: 10 PPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLR 69
PPP G N++ P P P +P P GG +PG +GG +
Sbjct: 81 PPPQGG----NQSQGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQ---G 133
Query: 70 QPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTG 129
PP P P G P G SQ G+ G Q + GP G
Sbjct: 134 PPPRPGKPEGPPPQGG-------NQSQGPPPRPGKP-EGPPPQGGNQSQGPPPHPGKPEG 185
Query: 130 PRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGG 164
P P G +Q PPP RPG+ G Q G
Sbjct: 186 PPPQGG-NQSQGPPP--RPGKPEGPPPQGGNQSQG 217
Score = 39.3 bits (90), Expect = 0.003
Identities = 47/170 (27%), Positives = 57/170 (33%), Gaps = 17/170 (10%)
Query: 11 PPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLRQ 70
P R + N+ P P +P P GG +PG +GG +
Sbjct: 36 PEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQ---GP 92
Query: 71 PPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGP 130
PP P P G P G SQ G+ G Q + GP R GP
Sbjct: 93 PPRPGKPEGQPPQGG-------NQSQGPPPRPGKP-EGPPPQGGNQSQGPPPRPGKPEGP 144
Query: 131 RPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGG---CARAAEAPQPTGG 177
P G +Q PPP RPG+ G Q G E P P GG
Sbjct: 145 PPQGG-NQSQGPPP--RPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQGG 191
Score = 37.0 bits (84), Expect = 0.016
Identities = 44/157 (28%), Positives = 54/157 (34%), Gaps = 17/157 (10%)
Query: 24 SPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLRQPPTPSAPPGSPLH 83
SP+ +P +P GG PG +GG + PP P P G P
Sbjct: 28 SPSVISGKPEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQ---GPPPRPGKPEGPPPQ 84
Query: 84 EGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQSPP 143
G SQ G+ G+ Q + GP R GP P G +Q PP
Sbjct: 85 GG-------NQSQGPPPRPGKP-EGQPPQGGNQSQGPPPRPGKPEGPPPQGG-NQSQGPP 135
Query: 144 PAERPGRDAAGARVCGTQRGG---CARAAEAPQPTGG 177
P RPG+ G Q G E P P GG
Sbjct: 136 P--RPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGG 170
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 45.4 bits (106), Expect = 5e-05
Identities = 63/221 (28%), Positives = 73/221 (33%), Gaps = 46/221 (20%)
Query: 2 GPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG- 60
GP AP PAG P A P + PGG + PGG G G
Sbjct: 504 GPAGERGAPGPAG----------PRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGP 553
Query: 61 -GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGR-----GLAGRLQQVR 114
G +G PP PS P G P G FP + + G+ G G Q
Sbjct: 554 PGSQGESGRPGPPGPSGPRGQPGVMG------FPGPKGNDGAPGKNGERGGPGGPGPQGP 607
Query: 115 P---GAAGPRGRLPWVTGP-------RPAG-----SLPAAQSPP-----PAERPGRDAAG 154
P G GP+G P TGP P G LP PP P E + AG
Sbjct: 608 PGKNGETGPQGP-PGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAG 666
Query: 155 ARVCGTQRGGCARAAEAPQP--TGGRGCSRGSATASGVGGK 193
A +G E P G G G+ GGK
Sbjct: 667 APGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGK 707
Score = 45.4 bits (106), Expect = 5e-05
Identities = 65/227 (28%), Positives = 75/227 (33%), Gaps = 30/227 (13%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPA-----PARPPLNQPPGGKALSTRALQPGGALEAG 57
PG +G P P G K P PA P P ++ P G PG G
Sbjct: 884 PGSNG-NPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPG 942
Query: 58 TRG-----GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG-------RG 105
G G G R L PP P GSP +G + P + G G
Sbjct: 943 APGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPG 1002
Query: 106 LAGRL----QQVRPGAAGPRGR--LPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCG 159
LAG + PG+ G GR P G R P A P P A G
Sbjct: 1003 LAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSG 1062
Query: 160 TQ-RGGCARAAEAPQPTGGRGC-----SRGSATASGVGGKAIKKAQR 200
+ G A A AP P G RG RG +G G A K R
Sbjct: 1063 DRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHR 1109
Score = 43.1 bits (100), Expect = 2e-04
Identities = 62/199 (31%), Positives = 74/199 (37%), Gaps = 30/199 (15%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQ----PPGGKALSTRALQPGGALEAGT 58
PGQ+G R K P A PP PPG + + PGG AG
Sbjct: 815 PGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGF 874
Query: 59 RGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGR-GLAGRLQQVRPGA 117
G R L PP + PG P G P AG G G PG
Sbjct: 875 PGA----RGLPGPPGSNGNPGPPGPSG------SPGKDGPPGPAGNTGAPG-----SPGV 919
Query: 118 AGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGRDA--AGAR-VCGTQRGGCARAAEAPQP 174
+GP+G P GS P AQ PP A P A GAR + G G +P P
Sbjct: 920 SGPKGD---AGQPGEKGS-PGAQGPPGAPGPLGIAGITGARGLAGPP--GMPGPRGSPGP 973
Query: 175 TGGRGCSRGSATASGVGGK 193
G +G S G A+G+ G+
Sbjct: 974 QGVKGES-GKPGANGLSGE 991
Score = 42.4 bits (98), Expect = 4e-04
Identities = 53/192 (27%), Positives = 64/192 (33%), Gaps = 25/192 (13%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGR 62
PG++G P G + P PP PGG T P G GG
Sbjct: 590 PGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGP 649
Query: 63 EGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRL-QQVRPGAAGPR 121
G P P G+P G G+G AG ++ PG AG
Sbjct: 650 PGENGKPGEPGPKGDAGAPGAPG-----------------GKGDAGAPGERGPPGLAGAP 692
Query: 122 GRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGCS 181
G P P G AA P P G G + +RGG +P P G +G
Sbjct: 693 GLRGGAGPPGPEGGKGAAGPPGPPGAAG--TPGLQGMPGERGGLG----SPGPKGDKG-E 745
Query: 182 RGSATASGVGGK 193
G A GV GK
Sbjct: 746 PGGPGADGVPGK 757
Score = 41.2 bits (95), Expect = 9e-04
Identities = 61/205 (29%), Positives = 72/205 (35%), Gaps = 47/205 (22%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGR 62
PG +G AP G Q A + P P P +N PGGK A PG G RG
Sbjct: 359 PGSNG-APGQRGEPGPQGHAGAQGP-PGPPGINGSPGGKGEMGPAGIPGAPGLMGARG-- 414
Query: 63 EGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRL-QQVRPGAAGPR 121
PP P+ G+P G G G G+ + PG G R
Sbjct: 415 --------PPGPAGANGAPGLRG-----------------GAGEPGKNGAKGEPGPRGER 449
Query: 122 GR--LPWVTGPRPAGSLPAAQSPPPAE-RPGRDAAGARVCGTQRG-----------GCAR 167
G +P V G + + P A PG AAG R RG G A
Sbjct: 450 GEAGIPGVPGAKGEDGKDGSPGEPGANGLPG--AAGERGAPGFRGPAGPNGIPGEKGPAG 507
Query: 168 AAEAPQPTGGRGCSRGSATASGVGG 192
AP P G RG + G GV G
Sbjct: 508 ERGAPGPAGPRGAA-GEPGRDGVPG 531
Score = 40.0 bits (92), Expect = 0.002
Identities = 66/197 (33%), Positives = 74/197 (37%), Gaps = 27/197 (13%)
Query: 3 PGQHGVAPPPA--GRERLQNKAWSPAPA-PARPPLNQPPGGKALSTRALQPGGALEAGTR 59
PG G + P G Q P A P+ PP PPG S A + G E+G R
Sbjct: 182 PGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPP--GPPGAIGPSGPAGKDG---ESG-R 235
Query: 60 GGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAG 119
GR G R L PP P G P FP + GR + + PG G
Sbjct: 236 PGRPGERGLPGPPGIKGPAGIP---------GFPGMKGHRGFDGRN-GEKGETGAPGLKG 285
Query: 120 PRGRLPWVTG-PRPAGSLPAAQSPPPAERPG-RDAAGARVCGTQRGGCARAAEAPQPTGG 177
G LP G P P G A P RPG AAGAR RG + P P G
Sbjct: 286 ENG-LPGENGAPGPMGPRGA---PGERGRPGLPGAAGARGNDGARGSDGQPG-PPGPPGT 340
Query: 178 RGCSRGSATASGVGGKA 194
G GS A G G A
Sbjct: 341 AGFP-GSPGAKGEVGPA 356
Score = 36.6 bits (83), Expect = 0.021
Identities = 62/244 (25%), Positives = 75/244 (30%), Gaps = 44/244 (18%)
Query: 2 GPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG- 60
GPG P G + LQ + P P PG K + PGG +AG G
Sbjct: 624 GPGGDKGDTGPPGPQGLQGLPGTGGP-PGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGE 682
Query: 61 -------GREGHRRLRQPPTP------SAPPGSPLHEGFLLIALFPSSQNRHRSAG-RGL 106
G G R PP P + PPG P G + P + S G +G
Sbjct: 683 RGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGD 742
Query: 107 AGRL----QQVRPGAAGPRG-----------------------RLPWVTGPRPAGSLPAA 139
G PG GPRG LP + GPR +
Sbjct: 743 KGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGE 802
Query: 140 QSPP-PAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGCSRGSATASGVGGKAIKKA 198
PP PA PG G G P G G GS A G + +K
Sbjct: 803 TGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGE 862
Query: 199 QRIP 202
+ P
Sbjct: 863 RGSP 866
Score = 36.6 bits (83), Expect = 0.021
Identities = 59/221 (26%), Positives = 72/221 (32%), Gaps = 50/221 (22%)
Query: 3 PGQHGVA-----PPPAGRERLQNKAWSPAP-----APARPPLNQPPGGKALSTRALQPGG 52
PG +G++ P P G L A P + P + PGGK PG
Sbjct: 983 PGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGA 1042
Query: 53 ALEAGTRG--------GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG- 103
G G G+ G R P P+ PG G P Q G
Sbjct: 1043 PGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGA------PGPQGPRGDKGE 1096
Query: 104 ---RGLAGRL-------QQVRPGAAGPRGRLPWVTGPRPAGSL-PAAQSPPPAERPGRDA 152
RG AG PG+ GP G+ + P PAG P S P PG+D
Sbjct: 1097 TGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGP----PGKDG 1152
Query: 153 AGARVCGTQRGGCARAAEAPQPTGGRGCSRGSATASGVGGK 193
G P P G RG RGS + G G+
Sbjct: 1153 T---------SGHPGPIGPPGPRGNRG-ERGSEGSPGHPGQ 1183
Score = 36.6 bits (83), Expect = 0.021
Identities = 31/83 (37%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQ--PPGGKALSTRALQPGGALEAGTRG 60
PG G +P PAG+ Q SP PA R P+ PPG S G G RG
Sbjct: 1115 PGAPG-SPGPAGQ---QGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRG 1170
Query: 61 --GREGHRRLRQPPTPSAPPGSP 81
G EG P P PPG+P
Sbjct: 1171 ERGSEGSPGHPGQPGPPGPPGAP 1193
Score = 35.0 bits (79), Expect = 0.061
Identities = 48/192 (25%), Positives = 65/192 (33%), Gaps = 27/192 (14%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG-- 60
PG+ G+ PP + PA P P + G + R + G E G G
Sbjct: 239 PGERGLPGPPGIK--------GPAGIPGFPGMK---GHRGFDGRNGEKG---ETGAPGLK 284
Query: 61 GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP 120
G G P P P G+P G L ++ R RG G+ PG GP
Sbjct: 285 GENGLPGENGAPGPMGPRGAPGERG--RPGLPGAAGARGNDGARGSDGQ-----PGPPGP 337
Query: 121 RGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGC 180
G + P G + A SP PG+ G Q A+ P G
Sbjct: 338 PGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEP----GPQGHAGAQGPPGPPGINGSPG 393
Query: 181 SRGSATASGVGG 192
+G +G+ G
Sbjct: 394 GKGEMGPAGIPG 405
Score = 32.7 bits (73), Expect = 0.30
Identities = 39/148 (26%), Positives = 48/148 (32%), Gaps = 25/148 (16%)
Query: 60 GGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAG 119
GG G+ PP P PPG+ H G P S G PG AG
Sbjct: 167 GGLAGYPGPAGPPGPPGPPGTSGHPG------SPGSPGYQGPPG----------EPGQAG 210
Query: 120 PRGRLPWVTGPRPAGSL-PAAQSPPPAE--RPGRDAAGARVCGTQRGGCARAAEAPQPTG 176
P G P P G++ P+ + E RPGR G A P G
Sbjct: 211 PSG------PPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKG 264
Query: 177 GRGCSRGSATASGVGGKAIKKAQRIPAE 204
RG + G +K +P E
Sbjct: 265 HRGFDGRNGEKGETGAPGLKGENGLPGE 292
Score = 32.0 bits (71), Expect = 0.52
Identities = 54/187 (28%), Positives = 64/187 (34%), Gaps = 40/187 (21%)
Query: 25 PAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRG--GREGHRRLRQPPTPSAP--PGS 80
P AP RPP Q P G P G + G G GR G P P P PGS
Sbjct: 91 PPTAPTRPPNGQGPQG---------PKG--DPGPPGIPGRNG-----DPGIPGQPGSPGS 134
Query: 81 PLHEGFL---------LIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRG--RLPWVTG 129
P G + S + A GLAG PG AGP G P +G
Sbjct: 135 PGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAG-----YPGPAGPPGPPGPPGTSG 189
Query: 130 PRPAGSLPAAQSPP--PAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGCSRGSATA 187
+ P Q PP P + G G + E+ +P GR RG
Sbjct: 190 HPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRP--GRPGERGLPGP 247
Query: 188 SGVGGKA 194
G+ G A
Sbjct: 248 PGIKGPA 254
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 45.4 bits (106), Expect = 5e-05
Identities = 53/200 (26%), Positives = 70/200 (35%), Gaps = 29/200 (14%)
Query: 2 GPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGG 61
G G HG P SP P +Q P G R GG + G
Sbjct: 429 GRGSHGQTP-------------SPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQ 475
Query: 62 REGHRRLRQPPTP--------SAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQV 113
R+G ++PP P GSPL + L + + Q A G+ +Q
Sbjct: 476 RQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQ--RLPSPTSAPQQPASQAAPPTQGQGRQS 533
Query: 114 RPGAAGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAG---ARVCGTQRGGCARAAE 170
RP A GP P P PA P Q+ PP +G + G GG R
Sbjct: 534 RPVAGGPGA--PPAARP-PASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGP 590
Query: 171 APQPTGGRGCSRGSATASGV 190
+P G G +R ++ A V
Sbjct: 591 PQKPPGPAGPTRQASQAGPV 610
Score = 39.7 bits (91), Expect = 0.002
Identities = 40/143 (27%), Positives = 51/143 (35%), Gaps = 23/143 (16%)
Query: 9 APPPAGRERLQNK-AWSP-APAPARPPLNQPP---GGKALSTRALQPGGALEAGTRGGRE 63
APP G+ R A P AP ARPP + P G +TR G G
Sbjct: 523 APPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPP 582
Query: 64 GHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGR 123
G ++ + PP P P + ++ R QQ RP GP GR
Sbjct: 583 GGQQRQGPPQKPPGPAGPTRQA-----------SQAGPVPRTGPPTTQQPRPSGPGPAGR 631
Query: 124 LPWVTGPRP-AGSLPAAQSPPPA 145
P+P P+ PPPA
Sbjct: 632 ------PKPQLAQKPSQDVPPPA 648
Score = 28.9 bits (63), Expect = 4.4
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 15/69 (21%)
Query: 93 PSSQNRHRSAGRGLAGRLQQVRPGA-----------AGP--RGRLPWVTGPRPAGSLPAA 139
P + R S GRG G Q PGA AGP + R P GP G P
Sbjct: 419 PRQRQRDASPGRGSHG--QTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQR 476
Query: 140 QSPPPAERP 148
Q PP +RP
Sbjct: 477 QGPPLQQRP 485
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 45.4 bits (106), Expect = 5e-05
Identities = 53/200 (26%), Positives = 70/200 (35%), Gaps = 29/200 (14%)
Query: 2 GPGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGG 61
G G HG P SP P +Q P G R GG + G
Sbjct: 429 GRGSHGQTP-------------SPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQ 475
Query: 62 REGHRRLRQPPTP--------SAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQV 113
R+G ++PP P GSPL + L + + Q A G+ +Q
Sbjct: 476 RQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQ--RLPSPTSAPQQPASQAAPPTQGQGRQS 533
Query: 114 RPGAAGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAG---ARVCGTQRGGCARAAE 170
RP A GP P P PA P Q+ PP +G + G GG R
Sbjct: 534 RPVAGGPGA--PPAARP-PASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGP 590
Query: 171 APQPTGGRGCSRGSATASGV 190
+P G G +R ++ A V
Sbjct: 591 PQKPPGPAGPTRQASQAGPV 610
Score = 40.4 bits (93), Expect = 0.001
Identities = 38/144 (26%), Positives = 51/144 (35%), Gaps = 24/144 (16%)
Query: 9 APPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRL 68
APP G+ R A P PP +PP + +A P + G
Sbjct: 523 APPTQGQGRQSRPV---AGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAP----- 574
Query: 69 RQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVT 128
P APPG +G P + G AG +Q PR P
Sbjct: 575 --PKASGAPPGGQQRQG-------PPQKPP------GPAGPTRQASQAGPVPRTGPPTTQ 619
Query: 129 GPRPAGSLPAAQSPPP-AERPGRD 151
PRP+G PA + P A++P +D
Sbjct: 620 QPRPSGPGPAGRPKPQLAQKPSQD 643
Score = 28.9 bits (63), Expect = 4.4
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 15/69 (21%)
Query: 93 PSSQNRHRSAGRGLAGRLQQVRPGA-----------AGP--RGRLPWVTGPRPAGSLPAA 139
P + R S GRG G Q PGA AGP + R P GP G P
Sbjct: 419 PRQRQRDASPGRGSHG--QTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQR 476
Query: 140 QSPPPAERP 148
Q PP +RP
Sbjct: 477 QGPPLQQRP 485
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 45.4 bits (106), Expect = 5e-05
Identities = 66/213 (30%), Positives = 76/213 (35%), Gaps = 32/213 (15%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPA--PARPPLNQPPGGKALS---------TRALQPG 51
PG+ G PP G L+ + P A P P PPG RA+ G
Sbjct: 615 PGEMG--PPGLGLPGLKGQRGFPGDAGLPGPPGFLGPPGPAGTPGQIDCDTDVKRAV--G 670
Query: 52 G----ALEAGTRGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGR-GL 106
G A++ G GG +G L PP P+ G GF P + AGR G
Sbjct: 671 GDRQEAIQPGCIGGPKGLPGLPGPPGPTGAKGLRGIPGFAGADGGPGPRGLPGDAGREGF 730
Query: 107 AGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCA 166
G PG GPRG V P P GS P P PG V G Q G
Sbjct: 731 PGP-----PGFIGPRGSKGAVGLPGPDGSPGPIGLPGPDGPPGERGLPGEVLGAQPGPRG 785
Query: 167 RAAEAPQP-----TGGRGCS--RGSATASGVGG 192
A QP G RG RGS G+ G
Sbjct: 786 DAGVPGQPGLKGLPGDRGPPGFRGSQGMPGMPG 818
Score = 35.4 bits (80), Expect = 0.047
Identities = 51/195 (26%), Positives = 68/195 (34%), Gaps = 10/195 (5%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPA--PARPPLNQPPGGKALSTRALQPGGALEAGTRG 60
PG+ P P G + +P P P L PG S + PG + G G
Sbjct: 1231 PGEANTLPGPVGVPGQKGDQGAPGERGPPGSPGLQGFPGITPPSNISGAPG---DKGAPG 1287
Query: 61 --GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG-RGLAGRLQQVRPGA 117
G +G+R PP +A PGS G P ++ +G +G G PG
Sbjct: 1288 IFGLKGYRGPPGPPGSAALPGSKGDTGNPGAPGTPGTKGWAGDSGPQGRPGVFGL--PGE 1345
Query: 118 AGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGG 177
GPRG ++ P G++ P PG A V G + T G
Sbjct: 1346 KGPRGEQGFMGNTGPTGAVGDRGPKGPKGDPGFPGAPGTVGAPGIAGIPQKIAVQPGTVG 1405
Query: 178 RGCSRGSATASGVGG 192
RG A G G
Sbjct: 1406 PQGRRGPPGAPGEMG 1420
Score = 34.3 bits (77), Expect = 0.10
Identities = 46/152 (30%), Positives = 53/152 (34%), Gaps = 30/152 (19%)
Query: 60 GGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAG 119
GG G R PP P PG P +GF LF + R+ GL G PGA G
Sbjct: 422 GGPPGPDGKRGPPGPPGLPGPPGPDGF----LFGLKGAKGRAGFPGLPG-----SPGARG 472
Query: 120 PR------GRLPWVTGPRPAGSLPAAQSPPPAE----RPGRDAAGARVCGTQRG------ 163
P+ G G LP P PGR G R Q G
Sbjct: 473 PKGWKGDAGECRCTEGDEAIKGLPGLPGPKGFAGINGEPGR--KGDRGDPGQHGLPGFPG 530
Query: 164 --GCARAAEAPQPTGGRGCSRGSATASGVGGK 193
G AP P G +G SR + T G G+
Sbjct: 531 LKGVPGNIGAPGPKGAKGDSR-TITTKGERGQ 561
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 45.1 bits (105), Expect = 6e-05
Identities = 48/173 (27%), Positives = 62/173 (35%), Gaps = 22/173 (12%)
Query: 25 PAPAPARPPLNQPPGG---KALSTRALQPGGALEAGTRGGREGHRRLRQPPTPSAPPGSP 81
P P P N PG + L +PG AG RG +G PP P+ P G P
Sbjct: 285 PKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGN-DGATGAAGPPGPTGPAGPP 343
Query: 82 LHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQS 141
FP + AG Q G+ GP+G P PAG+ A +
Sbjct: 344 ---------GFPGAVGAKGEAG-------PQGPRGSEGPQGVRGEPGPPGPAGAAGPAGN 387
Query: 142 PPPAERPGRDAAGAR--VCGTQRGGCARAAEAPQPTGGRGCSRGSATASGVGG 192
P +PG A + G AR PQ GG +G++ G G
Sbjct: 388 PGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPG 440
Score = 43.5 bits (101), Expect = 2e-04
Identities = 60/216 (27%), Positives = 75/216 (34%), Gaps = 32/216 (14%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQ-----PPGGKALSTRALQPGGALEAG 57
PG G P G A +P AR P PPG K S PG + G
Sbjct: 388 PGADG-QPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTG 446
Query: 58 TRG--------------GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG 103
+G G EG R R P P+ PG P G FP + +
Sbjct: 447 AKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADG--VAGP 504
Query: 104 RGLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRG 163
+G AG ++ PG AGP+G P G LP A+ + PG +
Sbjct: 505 KGPAG--ERGSPGPAGPKGS-PGEAGRPGEAGLPGAKGLTGS--PGSPGPDGKTGPPGPA 559
Query: 164 GCARAAEAPQPTGGRGCS-----RGSATASGVGGKA 194
G P P G RG + G A+G GKA
Sbjct: 560 GQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKA 595
Score = 41.6 bits (96), Expect = 7e-04
Identities = 66/234 (28%), Positives = 81/234 (34%), Gaps = 52/234 (22%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPA--PARPPLNQPPGGKALST---------RALQPG 51
PG G+ P G K P PA RP PPG + + A +PG
Sbjct: 535 PGAKGLTGSP-GSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPG 593
Query: 52 GALEAGTRG--------GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG 103
A E G G G++G + PP P+ P G +G A P Q AG
Sbjct: 594 KAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQG---PAGSPGFQGLPGPAG 650
Query: 104 ----------RGLAGRLQQVRP-GAAGPRG--------RLPWVTGPRPAGSLPA-----A 139
+G+ G L P GA G RG P GPR A P
Sbjct: 651 PPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKG 710
Query: 140 QSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGCSRGSATASGVGGK 193
+ P + A G + +RG AA P P G RG G A G GK
Sbjct: 711 DAGAPGAPGSQGAPGLQGMPGERG----AAGLPGPKGDRG-DAGPKGADGSPGK 759
Score = 41.2 bits (95), Expect = 9e-04
Identities = 53/197 (26%), Positives = 64/197 (32%), Gaps = 31/197 (15%)
Query: 3 PGQHGVAPP-----PAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAG 57
PG G + P P G P P P PPG QPG E G
Sbjct: 778 PGDKGESGPSGPAGPTGARGAPGDRGEPGP-PGPAGFAGPPGADG------QPGAKGEPG 830
Query: 58 TRGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGA 117
G + PP P+ P G P G + P ++ SAG PGA
Sbjct: 831 DAGAKGD----AGPPGPAGPAGPP---GPIGNVGAPGAKGARGSAGP----------PGA 873
Query: 118 AGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGG 177
G G V P P+G+ P PA + G R G P P G
Sbjct: 874 TGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGE 933
Query: 178 RGC--SRGSATASGVGG 192
+G + G A A G G
Sbjct: 934 KGSPGADGPAGAPGTPG 950
Score = 40.4 bits (93), Expect = 0.001
Identities = 69/227 (30%), Positives = 79/227 (34%), Gaps = 51/227 (22%)
Query: 3 PGQHGVAPPP-----AGRERLQNKAWSPAPA----PARPPLNQPPGGKALSTRALQPGGA 53
PG G A PP AG+E + PA PP P G+ S A P GA
Sbjct: 886 PGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGA 945
Query: 54 LE-------AGTRG--GREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGR 104
AG RG G G R R P P G P +G PS S R
Sbjct: 946 PGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQG-------PSG----ASGER 994
Query: 105 GLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAA-GARVCGTQRG 163
G G + PG AGP G P GS PGRD + GA+ + G
Sbjct: 995 GPPGPMGP--PGLAGPPGESGREGAPGAEGS------------PGRDGSPGAKGDRGETG 1040
Query: 164 -----GCARAAEAPQPTG--GRGCSRGSATASGVGGKAIKKAQRIPA 203
G A AP P G G+ RG +G G R PA
Sbjct: 1041 PAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPA 1087
Score = 38.5 bits (88), Expect = 0.006
Identities = 49/161 (30%), Positives = 60/161 (37%), Gaps = 22/161 (13%)
Query: 3 PGQHGVAPPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGR 62
PG G AP P G PA P+ P G + + G E G +G R
Sbjct: 1048 PGAPG-APGPVGPAGKSGDRGETGPAGPAGPVG-PVGARGPAGPQGPRGDKGETGEQGDR 1105
Query: 63 --EGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAG-------RGLAGRLQQV 113
+GHR P PPGSP +G + + SAG GL G +
Sbjct: 1106 GIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPI--- 1162
Query: 114 RPGAAGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAG 154
G GPRGR TG AG + P P PG +AG
Sbjct: 1163 --GPPGPRGR----TG--DAGPVGPPGPPGPPGPPGPPSAG 1195
Score = 37.0 bits (84), Expect = 0.016
Identities = 60/201 (29%), Positives = 72/201 (35%), Gaps = 36/201 (17%)
Query: 3 PGQHGVA-----PPPAGRERLQNKAWSPA----PAPARPP-LNQPPGGKALSTRALQPGG 52
PGQ G P P+G Q + + P P PP L PPG S R PG
Sbjct: 964 PGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGE---SGREGAPGA 1020
Query: 53 ALEAGTRGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQ 112
G R G G + R P+ PPG+P G A P +S RG
Sbjct: 1021 EGSPG-RDGSPGAKGDRGETGPAGPPGAPGAPG----APGPVGP-AGKSGDRG------- 1067
Query: 113 VRPGAAGPRGRLPWVTGPRPAGSL-PAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEA 171
G AGP G + V PAG P E+ R G R G +
Sbjct: 1068 -ETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHR-------GFSGLQGP 1119
Query: 172 PQPTGGRGCSRGSATASGVGG 192
P P G G +G + ASG G
Sbjct: 1120 PGPPGSPG-EQGPSGASGPAG 1139
Score = 33.5 bits (75), Expect = 0.18
Identities = 45/155 (29%), Positives = 52/155 (33%), Gaps = 22/155 (14%)
Query: 50 PGGALEAGTRGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHR--------- 100
P G R G G L PP P PPG P G L +
Sbjct: 122 PRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPM 181
Query: 101 --SAGRGLAGRLQQVRPGAAGPRG-RLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARV 157
S RGL G PGA GP+G + P P S P PP PG++
Sbjct: 182 GPSGPRGLPG-----PPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGP-PGKNGDDGEA 235
Query: 158 CGTQRGGCARAAEAPQPTGGRGCSRGSATASGVGG 192
R G P P G RG G+A G+ G
Sbjct: 236 GKPGRPG---ERGPPGPQGARGLP-GTAGLPGMKG 266
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 45.1 bits (105), Expect = 6e-05
Identities = 48/172 (27%), Positives = 61/172 (35%), Gaps = 25/172 (14%)
Query: 10 PPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLR 69
PPP G NK+ S P +P P GG PG +GG + +
Sbjct: 162 PPPQG----DNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKP----Q 213
Query: 70 QPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRP-GAAGPRGRLP--- 125
PP P P G P P N+ +SA R G+ Q P G P+G P
Sbjct: 214 GPPPPGKPQGPP-----------PQGDNKSQSA-RSPPGKPQGPPPQGGNQPQGPPPPPG 261
Query: 126 WVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGG 177
GP P G PPP + G G + R + + P P GG
Sbjct: 262 KPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGK-PQGPPPQGG 312
Score = 41.6 bits (96), Expect = 7e-04
Identities = 48/189 (25%), Positives = 62/189 (32%), Gaps = 40/189 (21%)
Query: 10 PPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGR------- 62
PPP G + Q P P P PP G + PG +GG
Sbjct: 81 PPPQGGNKPQG------PPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPP 134
Query: 63 ----------EGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQ 112
+G + + PP P P G P P N+ RS+ R G+ Q
Sbjct: 135 PPGKPQGPPPQGGNKPQGPPPPGKPQGPP-----------PQGDNKSRSS-RSPPGKPQG 182
Query: 113 VRP-GAAGPRGRLP---WVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARA 168
P G P+G P GP P G PPP + G G + R +
Sbjct: 183 PPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGK- 241
Query: 169 AEAPQPTGG 177
+ P P GG
Sbjct: 242 PQGPPPQGG 250
Score = 38.5 bits (88), Expect = 0.006
Identities = 45/173 (26%), Positives = 56/173 (32%), Gaps = 27/173 (15%)
Query: 9 APPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRL 68
APP G NK P P +P P GG PG +GG +
Sbjct: 39 APPQGG-----NKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGG----NKP 89
Query: 69 RQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRP-GAAGPRGRLP-- 125
+ PP P P G P Q + R G+ Q P G P+G P
Sbjct: 90 QGPPPPGKPQG-------------PPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPP 136
Query: 126 -WVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGG 177
GP P G PPP + G G + R + + P P GG
Sbjct: 137 GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGK-PQGPPPQGG 188
Score = 38.5 bits (88), Expect = 0.006
Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 13/143 (9%)
Query: 10 PPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLR 69
PPP G NK P P P +P P GG + PG +GG +
Sbjct: 266 PPPQGG----NKPQGPPP-PGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQ---G 317
Query: 70 QPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPG-AAGP---RGRLP 125
PP P P G P G P + + G R + PG GP G P
Sbjct: 318 PPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNP 377
Query: 126 WVTGPRPAGSLPAAQSPPPAERP 148
P PAG P PPA +P
Sbjct: 378 -QGPPPPAGGNPQQPQAPPAGQP 399
Score = 37.7 bits (86), Expect = 0.009
Identities = 47/188 (25%), Positives = 61/188 (32%), Gaps = 38/188 (20%)
Query: 10 PPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGR------- 62
PPP G NK P P P +P P G + PG +GG
Sbjct: 204 PPPQGG----NKPQGPPP-PGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPP 258
Query: 63 ----------EGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQ 112
+G + + PP P P G P P ++ RS+ R G+ Q
Sbjct: 259 PPGKPQGPPPQGGNKPQGPPPPGKPQGPP-----------PQGGSKSRSS-RSPPGKPQG 306
Query: 113 VRP-GAAGPRGRLP---WVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARA 168
P G P+G P GP P G PPP + G G + R +
Sbjct: 307 PPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKP 366
Query: 169 AEAPQPTG 176
PQ G
Sbjct: 367 QGPPQQEG 374
Score = 36.2 bits (82), Expect = 0.027
Identities = 41/144 (28%), Positives = 47/144 (32%), Gaps = 19/144 (13%)
Query: 10 PPPAGRERLQNKAWSPAPAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLR 69
PPP G + ++ SP P PP P GG PG +GG + +
Sbjct: 286 PPPQGGSKSRSSR-SPPGKPQGPP---PQGGNQPQGPPPPPGKPQGPPPQGGNKP----Q 337
Query: 70 QPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGP---RGRLPW 126
PP P P G P G S RS G QQ GP G P
Sbjct: 338 GPPPPGKPQGPPPQGG--------SKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQ 389
Query: 127 VTGPRPAGSLPAAQSPPPAERPGR 150
PAG PP RP R
Sbjct: 390 QPQAPPAGQPQGPPRPPQGGRPSR 413
>gi|118498339 EMI domain containing 2 [Homo sapiens]
Length = 439
Score = 45.1 bits (105), Expect = 6e-05
Identities = 55/195 (28%), Positives = 75/195 (38%), Gaps = 21/195 (10%)
Query: 27 PAPARPPLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLRQPPTPSAPPG----SPL 82
P PA PP ++ G+ P G L G G PP P P G SP
Sbjct: 208 PGPAGPPGSKGDRGQTGEKGPAGPPGLLGPPGPRGLPGEMGRPGPPGPPGPAGNPGPSPN 267
Query: 83 HEGFLLIALFPSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQSP 142
L +L P + ++ R + + V G GPRG P P G P + P
Sbjct: 268 SPQGALYSLQPPT-DKDNGDSRLASAIVDTVLAGVPGPRG------PPGPPGP-PGPRGP 319
Query: 143 P-PAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGCSRGSATASGVGGKAIKKAQRI 201
P P PG +RG + E P G G +ATA G G + +++A +I
Sbjct: 320 PGPPGTPGSQGLAG-----ERGTVGPSGE-PGVKGEEG--EKAATAEGEGVQQLREALKI 371
Query: 202 PAELYLLYIHVNCCH 216
AE L+ H+ H
Sbjct: 372 LAERVLILEHMIGIH 386
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 43.9 bits (102), Expect = 1e-04
Identities = 67/225 (29%), Positives = 77/225 (34%), Gaps = 65/225 (28%)
Query: 9 APPPAGRERLQNKAWSPAPAPARPPLNQPPG--GKALSTRALQP-------GGALEAGTR 59
AP P R R PA P P PPG G + A+ P G L
Sbjct: 72 APHPDSRTR-------PAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAP 124
Query: 60 GGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQ-----QVR 114
G R G R P P+AP A ++ R S G G R Q R
Sbjct: 125 GPRPGCSSARASPAPAAPQ-----------AAARTAPGRAASGGSGPGSRGQGSDQVGAR 173
Query: 115 PGAAGPRGRLPWVTGPR----PAGSLPAAQSP--PPAERPGRDAAGARVCGT--QRGGCA 166
P AG G+ P +T R P S + P P RPG GAR CGT GG
Sbjct: 174 PSRAG--GQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPG-SGTGARSCGTWGSGGGPG 230
Query: 167 RAA----------EAPQP------------TGGRGCSRGSATASG 189
AA ++PQP GGR S G T G
Sbjct: 231 TAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPG 275
Score = 29.6 bits (65), Expect = 2.6
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 112 QVRPGAAGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRG---GCARA 168
+ RP A P R + P +GS + PP RP + +G+R+ G GC+ A
Sbjct: 78 RTRPAARPPHPRTR--SPPGRSGSGTTFSAVPP--RPSQHQSGSRLRPAAPGPRPGCSSA 133
Query: 169 AEAPQPTGGRGCSR---GSATASGVG 191
+P P + +R G A + G G
Sbjct: 134 RASPAPAAPQAAARTAPGRAASGGSG 159
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 43.9 bits (102), Expect = 1e-04
Identities = 67/225 (29%), Positives = 77/225 (34%), Gaps = 65/225 (28%)
Query: 9 APPPAGRERLQNKAWSPAPAPARPPLNQPPG--GKALSTRALQP-------GGALEAGTR 59
AP P R R PA P P PPG G + A+ P G L
Sbjct: 72 APHPDSRTR-------PAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAP 124
Query: 60 GGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQ-----QVR 114
G R G R P P+AP A ++ R S G G R Q R
Sbjct: 125 GPRPGCSSARASPAPAAPQ-----------AAARTAPGRAASGGSGPGSRGQGSDQVGAR 173
Query: 115 PGAAGPRGRLPWVTGPR----PAGSLPAAQSP--PPAERPGRDAAGARVCGT--QRGGCA 166
P AG G+ P +T R P S + P P RPG GAR CGT GG
Sbjct: 174 PSRAG--GQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPG-SGTGARSCGTWGSGGGPG 230
Query: 167 RAA----------EAPQP------------TGGRGCSRGSATASG 189
AA ++PQP GGR S G T G
Sbjct: 231 TAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPG 275
Score = 29.6 bits (65), Expect = 2.6
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 112 QVRPGAAGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRG---GCARA 168
+ RP A P R + P +GS + PP RP + +G+R+ G GC+ A
Sbjct: 78 RTRPAARPPHPRTR--SPPGRSGSGTTFSAVPP--RPSQHQSGSRLRPAAPGPRPGCSSA 133
Query: 169 AEAPQPTGGRGCSR---GSATASGVG 191
+P P + +R G A + G G
Sbjct: 134 RASPAPAAPQAAARTAPGRAASGGSG 159
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 43.9 bits (102), Expect = 1e-04
Identities = 67/225 (29%), Positives = 77/225 (34%), Gaps = 65/225 (28%)
Query: 9 APPPAGRERLQNKAWSPAPAPARPPLNQPPG--GKALSTRALQP-------GGALEAGTR 59
AP P R R PA P P PPG G + A+ P G L
Sbjct: 72 APHPDSRTR-------PAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAP 124
Query: 60 GGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGRGLAGRLQ-----QVR 114
G R G R P P+AP A ++ R S G G R Q R
Sbjct: 125 GPRPGCSSARASPAPAAPQ-----------AAARTAPGRAASGGSGPGSRGQGSDQVGAR 173
Query: 115 PGAAGPRGRLPWVTGPR----PAGSLPAAQSP--PPAERPGRDAAGARVCGT--QRGGCA 166
P AG G+ P +T R P S + P P RPG GAR CGT GG
Sbjct: 174 PSRAG--GQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPG-SGTGARSCGTWGSGGGPG 230
Query: 167 RAA----------EAPQP------------TGGRGCSRGSATASG 189
AA ++PQP GGR S G T G
Sbjct: 231 TAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQPG 275
Score = 29.6 bits (65), Expect = 2.6
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 112 QVRPGAAGPRGRLPWVTGPRPAGSLPAAQSPPPAERPGRDAAGARVCGTQRG---GCARA 168
+ RP A P R + P +GS + PP RP + +G+R+ G GC+ A
Sbjct: 78 RTRPAARPPHPRTR--SPPGRSGSGTTFSAVPP--RPSQHQSGSRLRPAAPGPRPGCSSA 133
Query: 169 AEAPQPTGGRGCSR---GSATASGVG 191
+P P + +R G A + G G
Sbjct: 134 RASPAPAAPQAAARTAPGRAASGGSG 159
>gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens]
Length = 668
Score = 43.9 bits (102), Expect = 1e-04
Identities = 59/209 (28%), Positives = 73/209 (34%), Gaps = 40/209 (19%)
Query: 3 PGQHGVA--PPPAGRERLQNKAWSPA----PAPARPP-LNQPPGGKALSTRALQPGGALE 55
PGQ G P P G + + P P P PP + PPG K + PG E
Sbjct: 459 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGE 518
Query: 56 AGTRGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGR----------- 104
G G + + P P PPG P +G P + G
Sbjct: 519 KGETG--QAGSPVPGLPGPEGPPGPPGLQGV------PGPKGEAGLDGAKGEKGFQGEKG 570
Query: 105 -----GLAGRLQQVR-PGAAGPRGRL-----PWVTGPRPAGSLPAAQSPP--PAERPGRD 151
GL G + PG AGP+G P +TGP A LP PP R R
Sbjct: 571 DRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERG 630
Query: 152 AAGARVCGTQRGG-CARAAEAPQPTGGRG 179
G+R +G A +AP P G G
Sbjct: 631 KKGSRGPKGDKGDQGAPGLDAPCPLGEDG 659
>gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens]
Length = 690
Score = 43.9 bits (102), Expect = 1e-04
Identities = 59/209 (28%), Positives = 73/209 (34%), Gaps = 40/209 (19%)
Query: 3 PGQHGVA--PPPAGRERLQNKAWSPA----PAPARPP-LNQPPGGKALSTRALQPGGALE 55
PGQ G P P G + + P P P PP + PPG K + PG E
Sbjct: 481 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGE 540
Query: 56 AGTRGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQNRHRSAGR----------- 104
G G + + P P PPG P +G P + G
Sbjct: 541 KGETG--QAGSPVPGLPGPEGPPGPPGLQGV------PGPKGEAGLDGAKGEKGFQGEKG 592
Query: 105 -----GLAGRLQQVR-PGAAGPRGRL-----PWVTGPRPAGSLPAAQSPP--PAERPGRD 151
GL G + PG AGP+G P +TGP A LP PP R R
Sbjct: 593 DRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERG 652
Query: 152 AAGARVCGTQRGG-CARAAEAPQPTGGRG 179
G+R +G A +AP P G G
Sbjct: 653 KKGSRGPKGDKGDQGAPGLDAPCPLGEDG 681
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,824,964
Number of Sequences: 37866
Number of extensions: 1026695
Number of successful extensions: 10856
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 1182
Number of HSP's that attempted gapping in prelim test: 7527
Number of HSP's gapped (non-prelim): 3620
length of query: 249
length of database: 18,247,518
effective HSP length: 100
effective length of query: 149
effective length of database: 14,460,918
effective search space: 2154676782
effective search space used: 2154676782
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.