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Search of human proteins with 169169054
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169169054 PREDICTED: hypothetical protein [Homo sapiens]
(399 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169169054 PREDICTED: hypothetical protein [Homo sapiens] 813 0.0
gi|169168706 PREDICTED: hypothetical protein [Homo sapiens] 813 0.0
gi|169169649 PREDICTED: hypothetical protein [Homo sapiens] 813 0.0
gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo ... 42 7e-04
gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo ... 42 7e-04
gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo ... 42 7e-04
gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo s... 41 0.002
gi|169208169 PREDICTED: similar to kinase D-interacting substrat... 40 0.003
gi|169208819 PREDICTED: similar to kinase D-interacting substrat... 40 0.004
gi|169208593 PREDICTED: similar to kinase D-interacting substrat... 40 0.004
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 39 0.006
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens] 39 0.006
gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo ... 39 0.011
gi|239753144 PREDICTED: hypothetical protein [Homo sapiens] 36 0.054
gi|239747710 PREDICTED: hypothetical protein XP_002348232 [Homo ... 36 0.054
gi|239741576 PREDICTED: hypothetical protein XP_002342255 [Homo ... 36 0.054
gi|42821110 hypothetical protein LOC340602 [Homo sapiens] 36 0.054
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 36 0.054
gi|239756356 PREDICTED: similar to hCG1731366 [Homo sapiens] 35 0.12
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 35 0.12
gi|169209261 PREDICTED: similar to hCG1731366 [Homo sapiens] 35 0.12
gi|239745242 PREDICTED: similar to COMM domain containing 4 [Hom... 35 0.12
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 35 0.12
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 35 0.12
gi|19924099 synapsin I isoform Ia [Homo sapiens] 35 0.12
gi|19924097 synapsin I isoform Ib [Homo sapiens] 35 0.12
gi|31543543 retinoic acid induced 17 [Homo sapiens] 35 0.16
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 35 0.16
gi|237757308 synaptojanin 1 isoform b [Homo sapiens] 34 0.20
gi|84993742 tripartite motif-containing 71 [Homo sapiens] 34 0.20
>gi|169169054 PREDICTED: hypothetical protein [Homo sapiens]
Length = 399
Score = 813 bits (2099), Expect = 0.0
Identities = 399/399 (100%), Positives = 399/399 (100%)
Query: 1 MKHLGTALGPKSLKQQCSVPMSIQATGCTRRARLIWALLPLLPGGTGRVLIPCPRGTPVY 60
MKHLGTALGPKSLKQQCSVPMSIQATGCTRRARLIWALLPLLPGGTGRVLIPCPRGTPVY
Sbjct: 1 MKHLGTALGPKSLKQQCSVPMSIQATGCTRRARLIWALLPLLPGGTGRVLIPCPRGTPVY 60
Query: 61 LGHALGEAVDLLRDAAELAVNAVGMAHLGYDHGLRHAQLQLGIEVIQTRLLLLERDSREN 120
LGHALGEAVDLLRDAAELAVNAVGMAHLGYDHGLRHAQLQLGIEVIQTRLLLLERDSREN
Sbjct: 61 LGHALGEAVDLLRDAAELAVNAVGMAHLGYDHGLRHAQLQLGIEVIQTRLLLLERDSREN 120
Query: 121 RDPGAHASSGRCEIALQQRTEEAVGHPPSQAQLPHLLEHIRHLQEDQAMEQQHVQDAPVH 180
RDPGAHASSGRCEIALQQRTEEAVGHPPSQAQLPHLLEHIRHLQEDQAMEQQHVQDAPVH
Sbjct: 121 RDPGAHASSGRCEIALQQRTEEAVGHPPSQAQLPHLLEHIRHLQEDQAMEQQHVQDAPVH 180
Query: 181 LLALKVAKEVHGVGGPVLRRRQRACSGRDGAALVQQEDTALLCLPADHAAAVPQKPDLHQ 240
LLALKVAKEVHGVGGPVLRRRQRACSGRDGAALVQQEDTALLCLPADHAAAVPQKPDLHQ
Sbjct: 181 LLALKVAKEVHGVGGPVLRRRQRACSGRDGAALVQQEDTALLCLPADHAAAVPQKPDLHQ 240
Query: 241 AQLAGRGRGAAQRPLAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMHVHEGHPQGQ 300
AQLAGRGRGAAQRPLAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMHVHEGHPQGQ
Sbjct: 241 AQLAGRGRGAAQRPLAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMHVHEGHPQGQ 300
Query: 301 RGPRRRHSGRRAHLDGAARPPLPEIKGRASGPRNPPRRLKASPSQTRFKGPSGGEECRRG 360
RGPRRRHSGRRAHLDGAARPPLPEIKGRASGPRNPPRRLKASPSQTRFKGPSGGEECRRG
Sbjct: 301 RGPRRRHSGRRAHLDGAARPPLPEIKGRASGPRNPPRRLKASPSQTRFKGPSGGEECRRG 360
Query: 361 LFSATPPSRVLRDSRHGLGEHTISYQIRFSTLPTQVISV 399
LFSATPPSRVLRDSRHGLGEHTISYQIRFSTLPTQVISV
Sbjct: 361 LFSATPPSRVLRDSRHGLGEHTISYQIRFSTLPTQVISV 399
>gi|169168706 PREDICTED: hypothetical protein [Homo sapiens]
Length = 399
Score = 813 bits (2099), Expect = 0.0
Identities = 399/399 (100%), Positives = 399/399 (100%)
Query: 1 MKHLGTALGPKSLKQQCSVPMSIQATGCTRRARLIWALLPLLPGGTGRVLIPCPRGTPVY 60
MKHLGTALGPKSLKQQCSVPMSIQATGCTRRARLIWALLPLLPGGTGRVLIPCPRGTPVY
Sbjct: 1 MKHLGTALGPKSLKQQCSVPMSIQATGCTRRARLIWALLPLLPGGTGRVLIPCPRGTPVY 60
Query: 61 LGHALGEAVDLLRDAAELAVNAVGMAHLGYDHGLRHAQLQLGIEVIQTRLLLLERDSREN 120
LGHALGEAVDLLRDAAELAVNAVGMAHLGYDHGLRHAQLQLGIEVIQTRLLLLERDSREN
Sbjct: 61 LGHALGEAVDLLRDAAELAVNAVGMAHLGYDHGLRHAQLQLGIEVIQTRLLLLERDSREN 120
Query: 121 RDPGAHASSGRCEIALQQRTEEAVGHPPSQAQLPHLLEHIRHLQEDQAMEQQHVQDAPVH 180
RDPGAHASSGRCEIALQQRTEEAVGHPPSQAQLPHLLEHIRHLQEDQAMEQQHVQDAPVH
Sbjct: 121 RDPGAHASSGRCEIALQQRTEEAVGHPPSQAQLPHLLEHIRHLQEDQAMEQQHVQDAPVH 180
Query: 181 LLALKVAKEVHGVGGPVLRRRQRACSGRDGAALVQQEDTALLCLPADHAAAVPQKPDLHQ 240
LLALKVAKEVHGVGGPVLRRRQRACSGRDGAALVQQEDTALLCLPADHAAAVPQKPDLHQ
Sbjct: 181 LLALKVAKEVHGVGGPVLRRRQRACSGRDGAALVQQEDTALLCLPADHAAAVPQKPDLHQ 240
Query: 241 AQLAGRGRGAAQRPLAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMHVHEGHPQGQ 300
AQLAGRGRGAAQRPLAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMHVHEGHPQGQ
Sbjct: 241 AQLAGRGRGAAQRPLAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMHVHEGHPQGQ 300
Query: 301 RGPRRRHSGRRAHLDGAARPPLPEIKGRASGPRNPPRRLKASPSQTRFKGPSGGEECRRG 360
RGPRRRHSGRRAHLDGAARPPLPEIKGRASGPRNPPRRLKASPSQTRFKGPSGGEECRRG
Sbjct: 301 RGPRRRHSGRRAHLDGAARPPLPEIKGRASGPRNPPRRLKASPSQTRFKGPSGGEECRRG 360
Query: 361 LFSATPPSRVLRDSRHGLGEHTISYQIRFSTLPTQVISV 399
LFSATPPSRVLRDSRHGLGEHTISYQIRFSTLPTQVISV
Sbjct: 361 LFSATPPSRVLRDSRHGLGEHTISYQIRFSTLPTQVISV 399
>gi|169169649 PREDICTED: hypothetical protein [Homo sapiens]
Length = 399
Score = 813 bits (2099), Expect = 0.0
Identities = 399/399 (100%), Positives = 399/399 (100%)
Query: 1 MKHLGTALGPKSLKQQCSVPMSIQATGCTRRARLIWALLPLLPGGTGRVLIPCPRGTPVY 60
MKHLGTALGPKSLKQQCSVPMSIQATGCTRRARLIWALLPLLPGGTGRVLIPCPRGTPVY
Sbjct: 1 MKHLGTALGPKSLKQQCSVPMSIQATGCTRRARLIWALLPLLPGGTGRVLIPCPRGTPVY 60
Query: 61 LGHALGEAVDLLRDAAELAVNAVGMAHLGYDHGLRHAQLQLGIEVIQTRLLLLERDSREN 120
LGHALGEAVDLLRDAAELAVNAVGMAHLGYDHGLRHAQLQLGIEVIQTRLLLLERDSREN
Sbjct: 61 LGHALGEAVDLLRDAAELAVNAVGMAHLGYDHGLRHAQLQLGIEVIQTRLLLLERDSREN 120
Query: 121 RDPGAHASSGRCEIALQQRTEEAVGHPPSQAQLPHLLEHIRHLQEDQAMEQQHVQDAPVH 180
RDPGAHASSGRCEIALQQRTEEAVGHPPSQAQLPHLLEHIRHLQEDQAMEQQHVQDAPVH
Sbjct: 121 RDPGAHASSGRCEIALQQRTEEAVGHPPSQAQLPHLLEHIRHLQEDQAMEQQHVQDAPVH 180
Query: 181 LLALKVAKEVHGVGGPVLRRRQRACSGRDGAALVQQEDTALLCLPADHAAAVPQKPDLHQ 240
LLALKVAKEVHGVGGPVLRRRQRACSGRDGAALVQQEDTALLCLPADHAAAVPQKPDLHQ
Sbjct: 181 LLALKVAKEVHGVGGPVLRRRQRACSGRDGAALVQQEDTALLCLPADHAAAVPQKPDLHQ 240
Query: 241 AQLAGRGRGAAQRPLAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMHVHEGHPQGQ 300
AQLAGRGRGAAQRPLAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMHVHEGHPQGQ
Sbjct: 241 AQLAGRGRGAAQRPLAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMHVHEGHPQGQ 300
Query: 301 RGPRRRHSGRRAHLDGAARPPLPEIKGRASGPRNPPRRLKASPSQTRFKGPSGGEECRRG 360
RGPRRRHSGRRAHLDGAARPPLPEIKGRASGPRNPPRRLKASPSQTRFKGPSGGEECRRG
Sbjct: 301 RGPRRRHSGRRAHLDGAARPPLPEIKGRASGPRNPPRRLKASPSQTRFKGPSGGEECRRG 360
Query: 361 LFSATPPSRVLRDSRHGLGEHTISYQIRFSTLPTQVISV 399
LFSATPPSRVLRDSRHGLGEHTISYQIRFSTLPTQVISV
Sbjct: 361 LFSATPPSRVLRDSRHGLGEHTISYQIRFSTLPTQVISV 399
>gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 42.4 bits (98), Expect = 7e-04
Identities = 41/155 (26%), Positives = 55/155 (35%), Gaps = 14/155 (9%)
Query: 198 LRRRQRACSGRDGAALVQQEDTALLCLPADHAAAVPQKPDLHQAQLAGRGRGAAQRPLAA 257
++RR V++ A C +A +P +P A LA R +RP A
Sbjct: 60 VKRRSGGFKSHSATERVERSRLARAC----YARRLPPRPTRSPAPLARRPGKPPRRPKGA 115
Query: 258 RGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMHVHEGHPQGQRGPRRRHSGRRAHLDGA 317
G P+ P AP QPP + + Q RGP GR A GA
Sbjct: 116 AGH-----PSAPPAAAPAAPAQPPAPRPESQLSDRPQSWEQKPRGP-----GRSARSAGA 165
Query: 318 ARPPLPEIKGRASGPRNPPRRLKASPSQTRFKGPS 352
A PP + R PR A +T + S
Sbjct: 166 AAPPAGGLAQARQARRRRPRAAAALTGRTHQRSRS 200
>gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 42.4 bits (98), Expect = 7e-04
Identities = 41/155 (26%), Positives = 55/155 (35%), Gaps = 14/155 (9%)
Query: 198 LRRRQRACSGRDGAALVQQEDTALLCLPADHAAAVPQKPDLHQAQLAGRGRGAAQRPLAA 257
++RR V++ A C +A +P +P A LA R +RP A
Sbjct: 60 VKRRSGGFKSHSATERVERSRLARAC----YARRLPPRPTRSPAPLARRPGKPPRRPKGA 115
Query: 258 RGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMHVHEGHPQGQRGPRRRHSGRRAHLDGA 317
G P+ P AP QPP + + Q RGP GR A GA
Sbjct: 116 AGH-----PSAPPAAAPAAPAQPPAPRPESQLSDRPQSWEQKPRGP-----GRSARSAGA 165
Query: 318 ARPPLPEIKGRASGPRNPPRRLKASPSQTRFKGPS 352
A PP + R PR A +T + S
Sbjct: 166 AAPPAGGLAQARQARRRRPRAAAALTGRTHQRSRS 200
>gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 42.4 bits (98), Expect = 7e-04
Identities = 41/155 (26%), Positives = 55/155 (35%), Gaps = 14/155 (9%)
Query: 198 LRRRQRACSGRDGAALVQQEDTALLCLPADHAAAVPQKPDLHQAQLAGRGRGAAQRPLAA 257
++RR V++ A C +A +P +P A LA R +RP A
Sbjct: 60 VKRRSGGFKSHSATERVERSRLARAC----YARRLPPRPTRSPAPLARRPGKPPRRPKGA 115
Query: 258 RGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMHVHEGHPQGQRGPRRRHSGRRAHLDGA 317
G P+ P AP QPP + + Q RGP GR A GA
Sbjct: 116 AGH-----PSAPPAAAPAAPAQPPAPRPESQLSDRPQSWEQRPRGP-----GRSARSAGA 165
Query: 318 ARPPLPEIKGRASGPRNPPRRLKASPSQTRFKGPS 352
A PP + R PR A +T + S
Sbjct: 166 AAPPAGGLAQARQARRRRPRAAAALTGRTHQRSRS 200
>gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo
sapiens]
Length = 2506
Score = 40.8 bits (94), Expect = 0.002
Identities = 66/260 (25%), Positives = 91/260 (35%), Gaps = 64/260 (24%)
Query: 115 RDSRENRDPGAHASSGRCEIALQQRTEEAVGHP-PSQAQLPHLLEHIRHLQEDQAMEQQH 173
RD R +R P S GR +A +Q + G P PS + R L + + + H
Sbjct: 2241 RDQRWSRSP----SEGREHMAHRQGSSSVSGSPAPSTSGTSTPRRGRRQLPQTPSTPRPH 2296
Query: 174 VQDAPVHLLALKVAKEVHGVGGPVLRRRQRACSGRDGAALVQQEDTALLCLPADHAAAVP 233
V +PV ++ G G P +++Q+ QQ+
Sbjct: 2297 VSYSPV-------IRKAGGSGPPQQQQQQQ-----------QQQQ--------------- 2323
Query: 234 QKPDLHQAQLAGRGRGAAQRPLAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMHVH 293
Q +A GR A P RR+ P A PLA P G H
Sbjct: 2324 ------QQAVARPGRAATSGP-----RRY------PGPTAEPLAGDRPPT-----GGHSS 2361
Query: 294 EGHPQGQR---GPRRRHSGRRAHLDGAARPPL-PEIKGRASGPRNPPRRLKASPSQTRFK 349
P+ +R GP R S R GA P P + GPR+ + +
Sbjct: 2362 GRSPRMERRVPGPARSESPRACRHGGARWPASGPHVSEGPPGPRHHGYYRGSDYDEADGP 2421
Query: 350 GPSGGEECRRGLFSATPPSR 369
G GGEE G + A PP R
Sbjct: 2422 GSGGGEEAMAGAYDAPPPVR 2441
>gi|169208169 PREDICTED: similar to kinase D-interacting substrate
220 [Homo sapiens]
Length = 380
Score = 40.4 bits (93), Expect = 0.003
Identities = 43/166 (25%), Positives = 64/166 (38%), Gaps = 26/166 (15%)
Query: 196 PVLRRRQRACSGRDGAALVQQEDTALLCLPADHAAAVPQKPDLHQAQLAGRGRGAAQRPL 255
P+L R RA G G A +++ H A ++P+L ++ G +
Sbjct: 217 PLLARFARAAGGHGGEAGSAGKNSGR------HRAQGSERPELGRSMSLALGAVTEEEAA 270
Query: 256 AARGRRFLDFPAQPQVLAPP-------LAHQPPQLHRDHIGMHVH-EGHP-QGQRGPRRR 306
R + P PQ L PP L + IG+ H EG P G+ G RRR
Sbjct: 271 RLRAGALMALPNSPQSSGTGRWRSQEVLEGAPPTLAQAPIGLSPHPEGGPGSGRLGLRRR 330
Query: 307 HSGRRAHLDGAARPPLPEIKGRASGPRNPPRRLKASPSQTRFKGPS 352
+ P +P + G A GP + P L+A+ GP+
Sbjct: 331 STA----------PDIPSLVGEAPGPESGP-ELEANALSVSVPGPN 365
>gi|169208819 PREDICTED: similar to kinase D-interacting substrate
220 [Homo sapiens]
Length = 380
Score = 40.0 bits (92), Expect = 0.004
Identities = 43/166 (25%), Positives = 64/166 (38%), Gaps = 26/166 (15%)
Query: 196 PVLRRRQRACSGRDGAALVQQEDTALLCLPADHAAAVPQKPDLHQAQLAGRGRGAAQRPL 255
P+L R RA G G A +++ H A ++P+L ++ G +
Sbjct: 217 PLLARFARAAGGHGGEAGSAGKNSGR------HRAQGSERPELGRSMSLALGAVTEEEAA 270
Query: 256 AARGRRFLDFPAQPQVLAPP-------LAHQPPQLHRDHIGMHVH-EGHP-QGQRGPRRR 306
R + P PQ L PP L + IG+ H EG P G+ G RRR
Sbjct: 271 RLRAGALMALPNSPQSSGTGRWRSQEVLEGAPPTLAQAPIGLSPHPEGGPGSGRLGLRRR 330
Query: 307 HSGRRAHLDGAARPPLPEIKGRASGPRNPPRRLKASPSQTRFKGPS 352
+ P +P + G A GP + P L+A+ GP+
Sbjct: 331 STA----------PDIPSLVGEAPGPESGP-ELEANALPVSVPGPN 365
>gi|169208593 PREDICTED: similar to kinase D-interacting substrate
220 [Homo sapiens]
Length = 380
Score = 40.0 bits (92), Expect = 0.004
Identities = 43/166 (25%), Positives = 64/166 (38%), Gaps = 26/166 (15%)
Query: 196 PVLRRRQRACSGRDGAALVQQEDTALLCLPADHAAAVPQKPDLHQAQLAGRGRGAAQRPL 255
P+L R RA G G A +++ H A ++P+L ++ G +
Sbjct: 217 PLLARFARAAGGHGGEAGSAGKNSGR------HRAQGSERPELGRSMSLALGAVTEEEAA 270
Query: 256 AARGRRFLDFPAQPQVLAPP-------LAHQPPQLHRDHIGMHVH-EGHP-QGQRGPRRR 306
R + P PQ L PP L + IG+ H EG P G+ G RRR
Sbjct: 271 RLRAGALMALPNSPQSSGTGRWRSQEVLEGAPPTLAQAPIGLSPHPEGGPGSGRLGLRRR 330
Query: 307 HSGRRAHLDGAARPPLPEIKGRASGPRNPPRRLKASPSQTRFKGPS 352
+ P +P + G A GP + P L+A+ GP+
Sbjct: 331 STA----------PDIPSLVGEAPGPESGP-ELEANALPVSVPGPN 365
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 39.3 bits (90), Expect = 0.006
Identities = 58/186 (31%), Positives = 67/186 (36%), Gaps = 35/186 (18%)
Query: 195 GPVLRRRQRACSGRDGAALVQQEDTALLCLPADHAAAVPQKPDLHQAQLAGRGRGAAQRP 254
GP+ RR +CSGR G+A L C AAA L AQ G R AQ P
Sbjct: 99 GPLGRRA--SCSGRAGSA------GRLRC----SAAA------LSAAQRGGPAR--AQVP 138
Query: 255 LAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMH------VHEGHPQGQRGPRRRHS 308
A R F PA P +P +P R G +H G P R
Sbjct: 139 PALR--TFSPGPASPPRASP--GGRPGSEARGRSGAECARRVPLHHGPPGASGVGSERDR 194
Query: 309 GRRAHLDGAARPPLPEIKGRASGP-----RNPPRRLKASPSQTRFKGPSGGEECRRGLFS 363
+ H A PP P I G GP N R S +R G +GGE R L
Sbjct: 195 KFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRR 254
Query: 364 ATPPSR 369
P R
Sbjct: 255 PRAPGR 260
Score = 33.5 bits (75), Expect = 0.35
Identities = 42/149 (28%), Positives = 53/149 (35%), Gaps = 28/149 (18%)
Query: 244 AGRGRGAAQRPLAARGRRFLDFPAQP--QVLAPPLAHQPP-------QLHRDHIGMHVHE 294
AG G +RP RG P P +V APP A PP + R G+
Sbjct: 38 AGAGSKLWRRP---RGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGA 94
Query: 295 GHPQGQRGPRRRHSGRR---------------AHLDGAARPPLPE-IKGRASGPRNPPRR 338
G G R SGR A G AR +P ++ + GP +PPR
Sbjct: 95 FVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRA 154
Query: 339 LKASPSQTRFKGPSGGEECRRGLFSATPP 367
+ +G SG E RR PP
Sbjct: 155 SPGGRPGSEARGRSGAECARRVPLHHGPP 183
>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 39.3 bits (90), Expect = 0.006
Identities = 58/186 (31%), Positives = 67/186 (36%), Gaps = 35/186 (18%)
Query: 195 GPVLRRRQRACSGRDGAALVQQEDTALLCLPADHAAAVPQKPDLHQAQLAGRGRGAAQRP 254
GP+ RR +CSGR G+A L C AAA L AQ G R AQ P
Sbjct: 99 GPLGRRA--SCSGRAGSA------GRLRC----SAAA------LSAAQRGGPAR--AQVP 138
Query: 255 LAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMH------VHEGHPQGQRGPRRRHS 308
A R F PA P +P +P R G +H G P R
Sbjct: 139 PALR--TFSPGPASPPRASP--GGRPGSEARGRSGAECARRVPLHHGPPGASGVGSERDR 194
Query: 309 GRRAHLDGAARPPLPEIKGRASGP-----RNPPRRLKASPSQTRFKGPSGGEECRRGLFS 363
+ H A PP P I G GP N R S +R G +GGE R L
Sbjct: 195 KFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRR 254
Query: 364 ATPPSR 369
P R
Sbjct: 255 PRAPGR 260
Score = 33.5 bits (75), Expect = 0.35
Identities = 42/149 (28%), Positives = 53/149 (35%), Gaps = 28/149 (18%)
Query: 244 AGRGRGAAQRPLAARGRRFLDFPAQP--QVLAPPLAHQPP-------QLHRDHIGMHVHE 294
AG G +RP RG P P +V APP A PP + R G+
Sbjct: 38 AGAGSKLWRRP---RGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGA 94
Query: 295 GHPQGQRGPRRRHSGRR---------------AHLDGAARPPLPE-IKGRASGPRNPPRR 338
G G R SGR A G AR +P ++ + GP +PPR
Sbjct: 95 FVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRA 154
Query: 339 LKASPSQTRFKGPSGGEECRRGLFSATPP 367
+ +G SG E RR PP
Sbjct: 155 SPGGRPGSEARGRSGAECARRVPLHHGPP 183
>gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo
sapiens]
Length = 351
Score = 38.5 bits (88), Expect = 0.011
Identities = 46/144 (31%), Positives = 54/144 (37%), Gaps = 18/144 (12%)
Query: 221 LLCLPADHAAAVPQKPDLHQAQLAGRGRGAAQRPLAARGRRFLDFPAQPQVLAP--PLAH 278
LL LP A +P P A A +RP A PA + P PL H
Sbjct: 148 LLELPFGQAGGIPLYPRAAPAPAARPSPDPGRRPPPAA-------PAPVVHVGPVLPLLH 200
Query: 279 QPPQLHRDHIGMHVHEGHPQGQRGPRR---RHSGRRAHLDGAARPPLPEIKGRASGPRNP 335
P + +G H + + PRR R R GAAR LPE R PR
Sbjct: 201 DPVGVPLAPLG-HGGVDWAENKERPRRLRLRSQRFRPPSPGAARSQLPETARR---PRPR 256
Query: 336 PRRLKASPSQTRFKGPSGGEECRR 359
PR A P + R P G CRR
Sbjct: 257 PR--PALPRRAREPQPGSGRRCRR 278
>gi|239753144 PREDICTED: hypothetical protein [Homo sapiens]
Length = 407
Score = 36.2 bits (82), Expect = 0.054
Identities = 44/131 (33%), Positives = 54/131 (41%), Gaps = 23/131 (17%)
Query: 177 APVHLLALKVAKEVH----------GVGGPVLRRRQRACSGR-DGAALVQQEDTALLCLP 225
AP+HL L+V E H G G PV R G DGA +Q A
Sbjct: 287 APLHLPVLRVVAESHAAAAGHHTEGGEGRPVGEGRALLHQGLVDGALAIQHHYGAAAQAD 346
Query: 226 ADHAAAVP-QKPDLHQAQLAGRGRGAAQRP-LAARGRRFLDFPAQPQVLAPPLAHQPPQL 283
++ A P Q + ++LA R R + Q P ARGR P+ L PPL QP L
Sbjct: 347 LENVAVAPRQASEREVSRLAHRRRVSDQWPRKRARGR-------GPE-LPPPLPQQP--L 396
Query: 284 HRDHIGMHVHE 294
H G H E
Sbjct: 397 AHMHSGQHRQE 407
>gi|239747710 PREDICTED: hypothetical protein XP_002348232 [Homo
sapiens]
Length = 407
Score = 36.2 bits (82), Expect = 0.054
Identities = 44/131 (33%), Positives = 54/131 (41%), Gaps = 23/131 (17%)
Query: 177 APVHLLALKVAKEVH----------GVGGPVLRRRQRACSGR-DGAALVQQEDTALLCLP 225
AP+HL L+V E H G G PV R G DGA +Q A
Sbjct: 287 APLHLPVLRVVAESHAAAAGHHTEGGEGRPVGEGRALLHQGLVDGALAIQHHYGAAAQAD 346
Query: 226 ADHAAAVP-QKPDLHQAQLAGRGRGAAQRP-LAARGRRFLDFPAQPQVLAPPLAHQPPQL 283
++ A P Q + ++LA R R + Q P ARGR P+ L PPL QP L
Sbjct: 347 LENVAVAPRQASEREVSRLAHRRRVSDQWPRKRARGR-------GPE-LPPPLPQQP--L 396
Query: 284 HRDHIGMHVHE 294
H G H E
Sbjct: 397 AHMHSGQHRQE 407
>gi|239741576 PREDICTED: hypothetical protein XP_002342255 [Homo
sapiens]
Length = 407
Score = 36.2 bits (82), Expect = 0.054
Identities = 44/131 (33%), Positives = 54/131 (41%), Gaps = 23/131 (17%)
Query: 177 APVHLLALKVAKEVH----------GVGGPVLRRRQRACSGR-DGAALVQQEDTALLCLP 225
AP+HL L+V E H G G PV R G DGA +Q A
Sbjct: 287 APLHLPVLRVVAESHAAAAGHHTEGGEGRPVGEGRALLHQGLVDGALAIQHHYGAAAQAD 346
Query: 226 ADHAAAVP-QKPDLHQAQLAGRGRGAAQRP-LAARGRRFLDFPAQPQVLAPPLAHQPPQL 283
++ A P Q + ++LA R R + Q P ARGR P+ L PPL QP L
Sbjct: 347 LENVAVAPRQASEREVSRLAHRRRVSDQWPRKRARGR-------GPE-LPPPLPQQP--L 396
Query: 284 HRDHIGMHVHE 294
H G H E
Sbjct: 397 AHMHSGQHRQE 407
>gi|42821110 hypothetical protein LOC340602 [Homo sapiens]
Length = 503
Score = 36.2 bits (82), Expect = 0.054
Identities = 51/194 (26%), Positives = 69/194 (35%), Gaps = 37/194 (19%)
Query: 196 PVLRRRQRACSGRDGAALVQQEDTALLCLPADHAAAVPQKPDLHQAQLAGRGRGAAQRPL 255
P R CSG ++ Q ALL ++ A + L + L R G
Sbjct: 177 PGFRPSSYPCSGASTSSQATQPGPALLSHASEARPATRSRITLVASALRRRASGPGP--- 233
Query: 256 AARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMHVHEGHPQGQRGPRRRHSGRRAHLD 315
RG AQP P H+ L + P+ GP RR RA +
Sbjct: 234 VIRG-----CTAQP---GPAFPHRATHLDPARLS-------PESAPGPARRG---RASVP 275
Query: 316 GAAR-----PPLPEIKGRASGPRNPPRRLKASPSQTRFKGPSGGEECRRGLFSATPPSRV 370
G AR P P +GR S P + PR ++P R RG SA P+
Sbjct: 276 GPARRGCDSAPGPARRGRDSAPVSAPRGRDSAPGSAR-----------RGRDSAPGPALR 324
Query: 371 LRDSRHGLGEHTIS 384
+R +R G + S
Sbjct: 325 VRTARSDAGHRSTS 338
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 36.2 bits (82), Expect = 0.054
Identities = 31/103 (30%), Positives = 39/103 (37%), Gaps = 17/103 (16%)
Query: 269 PQVLAPPLAHQPPQLHRDHIGMHVHEGHPQGQRGPRRRHSGRRAHLDGAARPPLPEIKGR 328
P+ PP PP HR R P RR A L G++
Sbjct: 323 PRRRTPPRRMPPPPRHRR-------------SRSPVRRRRRSSASLSGSSSSS--SSSRS 367
Query: 329 ASGPRNPPRRLKASPSQTRFKGPSGGEECRRGLFS--ATPPSR 369
S P+ PP+R + P +TR PS RR S ATPP +
Sbjct: 368 RSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPPK 410
Score = 34.7 bits (78), Expect = 0.16
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 299 GQRGPRRRHSGRRAHLDGAARPPLPEIKGRASGPRNPPRRLKASPSQTRFKGPSGGEECR 358
G+ G RRRHS R+ P P + + + PR RR + P R + PS R
Sbjct: 515 GEVGRRRRHSPSRS------ASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPR 568
Query: 359 RGLFSATPPSR 369
R PP R
Sbjct: 569 RRRTPTPPPRR 579
Score = 29.3 bits (64), Expect = 6.6
Identities = 45/164 (27%), Positives = 64/164 (39%), Gaps = 27/164 (16%)
Query: 225 PADHAAAVPQKPDLHQAQLAGRGRGA-AQRPLAARGRRFLDFPAQPQVLAPPLAHQ---- 279
P+ A+ P+K Q + + RGR + P R RR P PP +
Sbjct: 525 PSRSASPSPRK---RQKETSPRGRRRRSPSPPPTRRRR------SPSPAPPPRRRRTPTP 575
Query: 280 PPQLHRDHIGMHVHEGHPQGQRGP-RRRHSGRRAHLDGAARPPLPEIKGRASGPRNPPRR 338
PP+ P+ P +RR+S A PP P K RAS P RR
Sbjct: 576 PPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPP-KRRASPSPPPKRR 634
Query: 339 LKASPSQ-------TRFKGPSGGEECRRGLFSATPPSRVLRDSR 375
+ SP T+ + PS + R+G + PSR R++R
Sbjct: 635 VSHSPPPKQRSSPVTKRRSPSLSSKHRKG----SSPSRSTREAR 674
>gi|239756356 PREDICTED: similar to hCG1731366 [Homo sapiens]
Length = 344
Score = 35.0 bits (79), Expect = 0.12
Identities = 39/155 (25%), Positives = 59/155 (38%), Gaps = 24/155 (15%)
Query: 240 QAQLAGRGRGAAQRPLAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMHVHEG---- 295
+ +L A Q P A R L F AQ H+P +L R +G H H G
Sbjct: 2 ETELVAEDWNAKQVPPAFWLRDILCFQAQTYTCC----HKPLRLFRGPMGSHTHAGPACW 57
Query: 296 ---HPQGQ-------RGPRRRHSG------RRAHLDGAARPPLPEIKGRASGPRNPPRRL 339
HP + P++R + H+ + PL ++G+ SG R R+
Sbjct: 58 AHLHPGDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQH 117
Query: 340 KASPSQTRFKGPSGGEECRRGLFSATPPSRVLRDS 374
A + + + G L A PS+V+ DS
Sbjct: 118 FAPGTSSGLRSAPGLTRAGPALPEAVSPSQVIVDS 152
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 35.0 bits (79), Expect = 0.12
Identities = 38/129 (29%), Positives = 48/129 (37%), Gaps = 13/129 (10%)
Query: 230 AAVPQKPDLHQAQLAGRGRGAAQRPLAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIG 289
+AVP +P HQ+ G+ RP AA G R P A P P R G
Sbjct: 104 SAVPPRPSQHQS-------GSRLRP-AAPGPR----PGCSSARASPAPAAPQAAARTAPG 151
Query: 290 MHVHEGHPQGQRGPRRRHSGRRAHLDGAARPPLPEIKGRASGPRNP-PRRLKASPSQTRF 348
G G RG G R G PPL + RA+ R+ P R P ++R
Sbjct: 152 RAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRP 211
Query: 349 KGPSGGEEC 357
+G C
Sbjct: 212 GSGTGARSC 220
>gi|169209261 PREDICTED: similar to hCG1731366 [Homo sapiens]
Length = 456
Score = 35.0 bits (79), Expect = 0.12
Identities = 39/155 (25%), Positives = 59/155 (38%), Gaps = 24/155 (15%)
Query: 240 QAQLAGRGRGAAQRPLAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMHVHEG---- 295
+ +L A Q P A R L F AQ H+P +L R +G H H G
Sbjct: 2 ETELVAEDWNAKQVPPAFWLRDILCFQAQTYTCC----HKPLRLFRGPMGSHTHAGPACW 57
Query: 296 ---HPQGQ-------RGPRRRHSG------RRAHLDGAARPPLPEIKGRASGPRNPPRRL 339
HP + P++R + H+ + PL ++G+ SG R R+
Sbjct: 58 AHLHPGDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQH 117
Query: 340 KASPSQTRFKGPSGGEECRRGLFSATPPSRVLRDS 374
A + + + G L A PS+V+ DS
Sbjct: 118 FAPGTSSGLRSAPGLTRAGPALPEAVSPSQVIVDS 152
>gi|239745242 PREDICTED: similar to COMM domain containing 4 [Homo
sapiens]
Length = 344
Score = 35.0 bits (79), Expect = 0.12
Identities = 39/155 (25%), Positives = 59/155 (38%), Gaps = 24/155 (15%)
Query: 240 QAQLAGRGRGAAQRPLAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMHVHEG---- 295
+ +L A Q P A R L F AQ H+P +L R +G H H G
Sbjct: 2 ETELVAEDWNAKQVPPAFWLRDILCFQAQTYTCC----HKPLRLFRGPMGSHTHAGPACW 57
Query: 296 ---HPQGQ-------RGPRRRHSG------RRAHLDGAARPPLPEIKGRASGPRNPPRRL 339
HP + P++R + H+ + PL ++G+ SG R R+
Sbjct: 58 AHLHPGDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQH 117
Query: 340 KASPSQTRFKGPSGGEECRRGLFSATPPSRVLRDS 374
A + + + G L A PS+V+ DS
Sbjct: 118 FAPGTSSGLRSAPGLTRAGPALPEAVSPSQVIVDS 152
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 35.0 bits (79), Expect = 0.12
Identities = 38/129 (29%), Positives = 48/129 (37%), Gaps = 13/129 (10%)
Query: 230 AAVPQKPDLHQAQLAGRGRGAAQRPLAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIG 289
+AVP +P HQ+ G+ RP AA G R P A P P R G
Sbjct: 104 SAVPPRPSQHQS-------GSRLRP-AAPGPR----PGCSSARASPAPAAPQAAARTAPG 151
Query: 290 MHVHEGHPQGQRGPRRRHSGRRAHLDGAARPPLPEIKGRASGPRNP-PRRLKASPSQTRF 348
G G RG G R G PPL + RA+ R+ P R P ++R
Sbjct: 152 RAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRP 211
Query: 349 KGPSGGEEC 357
+G C
Sbjct: 212 GSGTGARSC 220
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 35.0 bits (79), Expect = 0.12
Identities = 38/129 (29%), Positives = 48/129 (37%), Gaps = 13/129 (10%)
Query: 230 AAVPQKPDLHQAQLAGRGRGAAQRPLAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIG 289
+AVP +P HQ+ G+ RP AA G R P A P P R G
Sbjct: 104 SAVPPRPSQHQS-------GSRLRP-AAPGPR----PGCSSARASPAPAAPQAAARTAPG 151
Query: 290 MHVHEGHPQGQRGPRRRHSGRRAHLDGAARPPLPEIKGRASGPRNP-PRRLKASPSQTRF 348
G G RG G R G PPL + RA+ R+ P R P ++R
Sbjct: 152 RAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRP 211
Query: 349 KGPSGGEEC 357
+G C
Sbjct: 212 GSGTGARSC 220
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 35.0 bits (79), Expect = 0.12
Identities = 32/90 (35%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 269 PQVLAPPLAHQPPQLHRDHIGMHVHEGHPQGQRGPRRRHSGRRAHLDGAAR-PPLPEIKG 327
PQ PPL +PP + H+ G P G P+R S A A++ P + +G
Sbjct: 474 PQRQGPPLQQRPPPQGQQHLS---GLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQG 530
Query: 328 R-----ASGPRNPP-RRLKASPSQTRFKGP 351
R A GP PP R ASPS R GP
Sbjct: 531 RQSRPVAGGPGAPPAARPPASPSPQRQAGP 560
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 35.0 bits (79), Expect = 0.12
Identities = 32/90 (35%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 269 PQVLAPPLAHQPPQLHRDHIGMHVHEGHPQGQRGPRRRHSGRRAHLDGAAR-PPLPEIKG 327
PQ PPL +PP + H+ G P G P+R S A A++ P + +G
Sbjct: 474 PQRQGPPLQQRPPPQGQQHLS---GLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQG 530
Query: 328 R-----ASGPRNPP-RRLKASPSQTRFKGP 351
R A GP PP R ASPS R GP
Sbjct: 531 RQSRPVAGGPGAPPAARPPASPSPQRQAGP 560
>gi|31543543 retinoic acid induced 17 [Homo sapiens]
Length = 1067
Score = 34.7 bits (78), Expect = 0.16
Identities = 34/113 (30%), Positives = 41/113 (36%), Gaps = 25/113 (22%)
Query: 264 DFPAQPQVLAPPLAHQPPQLHRDHIGMH----------VHEGHPQGQRGPRRRHSGRRAH 313
D P L PL+H P Q H G +H HP Q GP HSG
Sbjct: 926 DMPNNMAALEKPLSH-PMQETMPHAGSSDQPHPSIQQGLHVPHPSSQSGPPLHHSG---- 980
Query: 314 LDGAARPPLPEIKGRASGPRNPPRRLKAS-PSQTRFKGPSGGEECRRGLFSAT 365
A PP P + PR PP+ +S P PS E + G A+
Sbjct: 981 ----APPPPP-----SQPPRQPPQAAPSSHPHSDLTFNPSSALEGQAGAQGAS 1024
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 34.7 bits (78), Expect = 0.16
Identities = 38/127 (29%), Positives = 44/127 (34%), Gaps = 29/127 (22%)
Query: 274 PPLAHQPPQLHRDHIGMHVHEGHPQGQRGPRRRHSGRRAHLDGAARPPLPEIKGRASGPR 333
PP H PP H H H PQ P H A PP P P
Sbjct: 994 PPAHHHPPHHH------HHHAPPPQ----PHHHH----------AHPPHPPEMETGGSPD 1033
Query: 334 NPPRRLKASPSQTRFKGPSGGEECRRGLFSATP--PSRVLRDSRHGLGEHTISYQIRFST 391
+PP RL P Q +G GG S TP PS S G G + +R+
Sbjct: 1034 DPPPRLALGP-QPSLRGWRGGGP------SPTPGAPSPSHHGSAGGGGGSSQGPALRYFQ 1086
Query: 392 LPTQVIS 398
LP + S
Sbjct: 1087 LPPRAAS 1093
>gi|237757308 synaptojanin 1 isoform b [Homo sapiens]
Length = 1350
Score = 34.3 bits (77), Expect = 0.20
Identities = 50/188 (26%), Positives = 68/188 (36%), Gaps = 38/188 (20%)
Query: 188 KEVHGVGGP----VLRRRQRA-----CSGRDGAALVQQEDTALLCLP--ADHAAAVP--- 233
KE G+G P V RR A + +D Q A L P A ++ A P
Sbjct: 1179 KEFGGIGAPPSPGVARREMEAPKSPGTTRKDNIGRSQPSPQAGLAGPGPAGYSTARPTIP 1238
Query: 234 ------QKPDLHQAQLAGRGRGAAQRPLA--ARGRRFLDFPAQPQVLAPPLAHQPPQLHR 285
P H AGR +Q + ++G FL P +PQ PP + PP R
Sbjct: 1239 PRAGVISAPQSHARASAGRLTPESQSKTSETSKGSTFLPEPLKPQAAFPPQSSLPPPAQR 1298
Query: 286 DHIGMHVHEGHPQGQRGPRRRHSGRRAHLDGAARPPLPEIKGRASGPRNPPRRLKASPSQ 345
+ V P Q GP+ PP P + R+S + P + P Q
Sbjct: 1299 LQEPL-VPVAAPMPQSGPQ----------PNLETPPQPPPRSRSS--HSLPSEASSQPQQ 1345
Query: 346 TRFKGPSG 353
+ PSG
Sbjct: 1346 EQ---PSG 1350
>gi|84993742 tripartite motif-containing 71 [Homo sapiens]
Length = 868
Score = 34.3 bits (77), Expect = 0.20
Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 295 GHPQGQRG-PRRRHSGRRAH-LDGAARPPLPEIKGRASGPRNPPRRLKASPSQTRFKGPS 352
G P G G RH AH A+ PPLP+ + R+ P ASPS + P
Sbjct: 138 GAPAGAGGHSNHRHHAHHAHPRASASAPPLPQAPQPPAPSRSAPGGPAASPSALLLRRPH 197
Query: 353 GGEECRRG 360
G C G
Sbjct: 198 GCSSCDEG 205
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,700,776
Number of Sequences: 37866
Number of extensions: 1030012
Number of successful extensions: 3955
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 168
Number of HSP's that attempted gapping in prelim test: 3824
Number of HSP's gapped (non-prelim): 276
length of query: 399
length of database: 18,247,518
effective HSP length: 104
effective length of query: 295
effective length of database: 14,309,454
effective search space: 4221288930
effective search space used: 4221288930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.