Guide to the Human Genome
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Name: LOC100290853 Sequence: fasta or formatted (407aa) NCBI GI: 239747710
Description:

PREDICTED: hypothetical protein XP_002348232

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.5         55           4
 C cysteine            0.5          2           1
 D aspartate           3.7         15           1
 E glutamate           8.1         33           4
 F phenylalanine       1.5          6           1
 G glycine            10.8         44           3
 H histidine           8.6         35           2
 I isoleucine          2.0          8           1
 K lysine              1.5          6           1
 L leucine             8.8         36           2
 M methionine          0.7          3           1
 N asparagine          1.2          5           1
 P proline             6.1         25           3
 Q glutamine           7.1         29           2
 R arginine            9.1         37           3
 S serine              2.9         12           2
 T threonine           2.2          9           2
 V valine             10.8         44           3
 W tryptophan          0.2          1           1
 Y tyrosine            0.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348232 
LOC100292866          1.000   PREDICTED: hypothetical protein 
LOC100288457          1.000   PREDICTED: hypothetical protein XP_002342255 
LOC100131283          0.014   PREDICTED: hypothetical protein 
LOC100131283          0.014   PREDICTED: hypothetical protein 
LOC100131283          0.014   PREDICTED: hypothetical protein 
MPP7                  0.013   palmitoylated membrane protein 7 
LOC100290893          0.013   PREDICTED: hypothetical protein XP_002347938 
LOC100288361          0.013   PREDICTED: hypothetical protein XP_002344205 
LOC100293136          0.010   PREDICTED: hypothetical protein 
LOC100290831          0.010   PREDICTED: hypothetical protein XP_002347799 
LOC100287562          0.010   PREDICTED: hypothetical protein XP_002343591 
PI4K2A                0.009   phosphatidylinositol 4-kinase type 2 alpha 
LOC100288181          0.009   PREDICTED: hypothetical protein XP_002342920 
PLEC1                 0.009   plectin 1 isoform 11 
PLEC1                 0.009   plectin 1 isoform 10 
PLEC1                 0.009   plectin 1 isoform 8 
PLEC1                 0.009   plectin 1 isoform 7 
PLEC1                 0.009   plectin 1 isoform 6 
PLEC1                 0.009   plectin 1 isoform 3 
PLEC1                 0.009   plectin 1 isoform 2 
PLEC1                 0.009   plectin 1 isoform 1 
LOC100133070          0.009   PREDICTED: hypothetical protein 
LOC100292237          0.009   PREDICTED: hypothetical protein 
LOC100289205          0.009   PREDICTED: hypothetical protein 
LOC100133070          0.009   PREDICTED: hypothetical protein 
LOC728767             0.009   PREDICTED: hypothetical protein 
LOC100289245          0.009   PREDICTED: hypothetical protein 
LOC100289205          0.009   PREDICTED: hypothetical protein XP_002343850 
LOC100133070          0.009   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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