Guide to the Human Genome
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Name: LOC100131283 Sequence: fasta or formatted (399aa) NCBI GI: 169169649
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {399aa} PREDICTED: hypothetical protein
alt mRNA {399aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         44           3
 C cysteine            1.8          7           1
 D aspartate           3.8         15           1
 E glutamate           4.5         18           2
 F phenylalanine       1.3          5           1
 G glycine             9.8         39           2
 H histidine           6.3         25           1
 I isoleucine          3.0         12           1
 K lysine              2.3          9           1
 L leucine            12.3         49           4
 M methionine          1.3          5           1
 N asparagine          0.8          3           1
 P proline             9.0         36           2
 Q glutamine           7.8         31           2
 R arginine           11.0         44           3
 S serine              4.8         19           2
 T threonine           3.3         13           1
 V valine              5.3         21           1
 W tryptophan          0.3          1           1
 Y tyrosine            0.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131283          1.000   PREDICTED: hypothetical protein 
LOC100131283          1.000   PREDICTED: hypothetical protein 
LOC100132234          0.022   PREDICTED: hypothetical protein LOC100132234 
LOC100132234          0.022   PREDICTED: hypothetical protein LOC100132234 
LOC100132234          0.022   PREDICTED: hypothetical protein LOC100132234 
CACNA1A               0.020   calcium channel, alpha 1A subunit isoform 4 
LOC100131244          0.019   PREDICTED: similar to kinase D-interacting substrat...
LOC100131244          0.019   PREDICTED: similar to kinase D-interacting substrat...
LOC100131244          0.019   PREDICTED: similar to kinase D-interacting substrat...
LOC645321             0.018   PREDICTED: hypothetical protein 
LOC645321             0.018   PREDICTED: hypothetical protein 
LOC100286967          0.018   PREDICTED: hypothetical protein XP_002342247 
LOC100292866          0.014   PREDICTED: hypothetical protein 
LOC100290853          0.014   PREDICTED: hypothetical protein XP_002348232 
LOC100288457          0.014   PREDICTED: hypothetical protein XP_002342255 
CXorf67               0.014   hypothetical protein LOC340602 
SRRM1                 0.014   serine/arginine repetitive matrix 1 
LOC440292             0.013   PREDICTED: similar to hCG1731366 
LOC100291634          0.013   PREDICTED: hypothetical protein XP_002346062 
LOC440292             0.013   PREDICTED: similar to hCG1731366 
LOC440292             0.013   PREDICTED: similar to COMM domain containing 4 [Hom...
LOC100287232          0.013   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.013   PREDICTED: hypothetical protein 
SYN1                  0.013   synapsin I isoform Ia 
SYN1                  0.013   synapsin I isoform Ib 
ZMIZ1                 0.013   retinoic acid induced 17 
SHANK1                0.013   SH3 and multiple ankyrin repeat domains 1 
SYNJ1                 0.011   synaptojanin 1 isoform b 
TRIM71                0.011   tripartite motif-containing 71 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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