Guide to the Human Genome
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Name: LOC730456 Sequence: fasta or formatted (197aa) NCBI GI: 169167080
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {175aa} PREDICTED: hypothetical protein
alt prot {174aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            17.8         35           4
 C cysteine            1.5          3           1
 D aspartate           2.0          4           1
 E glutamate           4.1          8           2
 F phenylalanine       1.5          3           1
 G glycine             9.6         19           2
 H histidine           0.5          1           1
 I isoleucine          0.0          0           0
 K lysine              1.5          3           1
 L leucine             7.1         14           2
 M methionine          0.5          1           1
 N asparagine          0.0          0           0
 P proline            12.2         24           2
 Q glutamine           4.6          9           1
 R arginine           13.7         27           7
 S serine             13.2         26           2
 T threonine           1.5          3           1
 V valine              4.6          9           1
 W tryptophan          3.6          7           2
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC730456             0.653   PREDICTED: hypothetical protein 
LOC730456             0.560   PREDICTED: hypothetical protein 
FAM48B1               0.048   hypothetical protein LOC100130302 
DDN                   0.045   dendrin 
LOC100289763          0.042   PREDICTED: hypothetical protein XP_002347867 
LOC100289681          0.042   PREDICTED: hypothetical protein XP_002343623 
LOC100292172          0.042   PREDICTED: hypothetical protein 
LOC100291337          0.040   PREDICTED: hypothetical protein XP_002348329 
LOC100287998          0.040   PREDICTED: hypothetical protein XP_002342281 
ANKRD33B              0.040   PREDICTED: ankyrin repeat domain 33B 
MICALL1               0.037   molecule interacting with Rab13 
MYO15A                0.037   myosin XV 
LOC100128979          0.037   PREDICTED: hypothetical protein 
LOC100128979          0.037   PREDICTED: hypothetical protein 
DACT3                 0.037   thymus expressed gene 3-like 
ANKRD56               0.037   ankyrin repeat domain 56 
LOC441086             0.034   PREDICTED: hypothetical protein 
AGAP2                 0.032   centaurin, gamma 1 isoform PIKE-L 
LOC100292157          0.032   PREDICTED: hypothetical protein 
LOC100129571          0.032   PREDICTED: similar to hCG1646049 
LOC100290926          0.032   PREDICTED: hypothetical protein XP_002347568 
LOC100129571          0.032   PREDICTED: similar to hCG1646049 
LOC100288243          0.032   PREDICTED: hypothetical protein 
LOC100288995          0.032   PREDICTED: hypothetical protein XP_002343379 
LOC100129571          0.032   PREDICTED: similar to hCG1646049 
LOC100288243          0.032   PREDICTED: hypothetical protein XP_002342233 
FOXE1                 0.032   forkhead box E1 
ADAM8                 0.032   ADAM metallopeptidase domain 8 precursor 
C17orf65              0.032   hypothetical protein LOC339201 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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