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Search of human proteins with 169165603
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169165603 PREDICTED: similar to proline rich 20 [Homo
sapiens]
(210 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169165603 PREDICTED: similar to proline rich 20 [Homo sapiens] 436 e-123
gi|169166067 PREDICTED: similar to proline rich 20 [Homo sapiens] 436 e-123
gi|239752488 PREDICTED: FLJ40296 protein family member [Homo sap... 219 1e-57
gi|38348198 proline rich 20 [Homo sapiens] 219 1e-57
gi|194353955 hypothetical protein LOC729250 [Homo sapiens] 219 1e-57
gi|194353953 hypothetical protein LOC729246 [Homo sapiens] 219 1e-57
gi|194353951 hypothetical protein LOC729240 [Homo sapiens] 219 1e-57
gi|194353949 hypothetical protein LOC729233 [Homo sapiens] 219 1e-57
gi|110832843 TBP-associated factor 4 [Homo sapiens] 48 5e-06
gi|224465238 hypothetical protein LOC283999 [Homo sapiens] 42 5e-04
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 42 5e-04
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 42 5e-04
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 42 5e-04
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 42 5e-04
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 41 6e-04
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 41 8e-04
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot... 41 8e-04
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 40 0.001
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 40 0.001
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 40 0.001
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 40 0.001
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 40 0.001
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi... 40 0.001
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi... 40 0.001
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 40 0.001
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] 40 0.001
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] 40 0.001
gi|77681565 NG5 protein [Homo sapiens] 40 0.001
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 40 0.001
gi|4559408 colony stimulating factor 2 receptor, beta precursor ... 40 0.002
>gi|169165603 PREDICTED: similar to proline rich 20 [Homo sapiens]
Length = 210
Score = 436 bits (1121), Expect = e-123
Identities = 210/210 (100%), Positives = 210/210 (100%)
Query: 1 MEEPRHSKRPRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARA 60
MEEPRHSKRPRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARA
Sbjct: 1 MEEPRHSKRPRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARA 60
Query: 61 QPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEAR 120
QPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEAR
Sbjct: 61 QPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEAR 120
Query: 121 QTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSPSLSFRP 180
QTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSPSLSFRP
Sbjct: 121 QTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSPSLSFRP 180
Query: 181 PGGSSTLRIVQTSNSTIVQSVPVFPAHSAH 210
PGGSSTLRIVQTSNSTIVQSVPVFPAHSAH
Sbjct: 181 PGGSSTLRIVQTSNSTIVQSVPVFPAHSAH 210
>gi|169166067 PREDICTED: similar to proline rich 20 [Homo sapiens]
Length = 210
Score = 436 bits (1121), Expect = e-123
Identities = 210/210 (100%), Positives = 210/210 (100%)
Query: 1 MEEPRHSKRPRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARA 60
MEEPRHSKRPRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARA
Sbjct: 1 MEEPRHSKRPRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARA 60
Query: 61 QPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEAR 120
QPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEAR
Sbjct: 61 QPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEAR 120
Query: 121 QTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSPSLSFRP 180
QTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSPSLSFRP
Sbjct: 121 QTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSPSLSFRP 180
Query: 181 PGGSSTLRIVQTSNSTIVQSVPVFPAHSAH 210
PGGSSTLRIVQTSNSTIVQSVPVFPAHSAH
Sbjct: 181 PGGSSTLRIVQTSNSTIVQSVPVFPAHSAH 210
>gi|239752488 PREDICTED: FLJ40296 protein family member [Homo
sapiens]
Length = 221
Score = 219 bits (559), Expect = 1e-57
Identities = 117/216 (54%), Positives = 139/216 (64%), Gaps = 13/216 (6%)
Query: 1 MEEPRHSKRPRFLAPNQASGGPPTEPGC------SGVDREDPVDPVQPAKPTAYVKPMRR 54
MEEPR SKR R +APNQASGGPP EPGC V+ + P P QPAKP AYVKP RR
Sbjct: 1 MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60
Query: 55 EPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVG------PGMYLVHLNDH 108
+PPAR + PPA RG+R GGS R GRGRG AG G+R G P ++ + L+ H
Sbjct: 61 QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVH-IQLDHH 119
Query: 109 GELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQT 168
GE G+QG+ E +T AFS +E PG VQEGPGP AQPE+G QEPP APGP AV Q
Sbjct: 120 GEPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQP 179
Query: 169 MLAPSPSLSFRPPGGSSTLRIVQTSNSTIVQSVPVF 204
+L P + FR G S+ L+++QT T VQ VPVF
Sbjct: 180 VLTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVF 215
>gi|38348198 proline rich 20 [Homo sapiens]
Length = 221
Score = 219 bits (559), Expect = 1e-57
Identities = 117/216 (54%), Positives = 139/216 (64%), Gaps = 13/216 (6%)
Query: 1 MEEPRHSKRPRFLAPNQASGGPPTEPGC------SGVDREDPVDPVQPAKPTAYVKPMRR 54
MEEPR SKR R +APNQASGGPP EPGC V+ + P P QPAKP AYVKP RR
Sbjct: 1 MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60
Query: 55 EPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVG------PGMYLVHLNDH 108
+PPAR + PPA RG+R GGS R GRGRG AG G+R G P ++ + L+ H
Sbjct: 61 QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVH-IQLDHH 119
Query: 109 GELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQT 168
GE G+QG+ E +T AFS +E PG VQEGPGP AQPE+G QEPP APGP AV Q
Sbjct: 120 GEPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQP 179
Query: 169 MLAPSPSLSFRPPGGSSTLRIVQTSNSTIVQSVPVF 204
+L P + FR G S+ L+++QT T VQ VPVF
Sbjct: 180 VLTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVF 215
>gi|194353955 hypothetical protein LOC729250 [Homo sapiens]
Length = 221
Score = 219 bits (559), Expect = 1e-57
Identities = 117/216 (54%), Positives = 139/216 (64%), Gaps = 13/216 (6%)
Query: 1 MEEPRHSKRPRFLAPNQASGGPPTEPGC------SGVDREDPVDPVQPAKPTAYVKPMRR 54
MEEPR SKR R +APNQASGGPP EPGC V+ + P P QPAKP AYVKP RR
Sbjct: 1 MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60
Query: 55 EPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVG------PGMYLVHLNDH 108
+PPAR + PPA RG+R GGS R GRGRG AG G+R G P ++ + L+ H
Sbjct: 61 QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVH-IQLDHH 119
Query: 109 GELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQT 168
GE G+QG+ E +T AFS +E PG VQEGPGP AQPE+G QEPP APGP AV Q
Sbjct: 120 GEPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQP 179
Query: 169 MLAPSPSLSFRPPGGSSTLRIVQTSNSTIVQSVPVF 204
+L P + FR G S+ L+++QT T VQ VPVF
Sbjct: 180 VLTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVF 215
>gi|194353953 hypothetical protein LOC729246 [Homo sapiens]
Length = 221
Score = 219 bits (559), Expect = 1e-57
Identities = 117/216 (54%), Positives = 139/216 (64%), Gaps = 13/216 (6%)
Query: 1 MEEPRHSKRPRFLAPNQASGGPPTEPGC------SGVDREDPVDPVQPAKPTAYVKPMRR 54
MEEPR SKR R +APNQASGGPP EPGC V+ + P P QPAKP AYVKP RR
Sbjct: 1 MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60
Query: 55 EPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVG------PGMYLVHLNDH 108
+PPAR + PPA RG+R GGS R GRGRG AG G+R G P ++ + L+ H
Sbjct: 61 QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVH-IQLDHH 119
Query: 109 GELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQT 168
GE G+QG+ E +T AFS +E PG VQEGPGP AQPE+G QEPP APGP AV Q
Sbjct: 120 GEPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQP 179
Query: 169 MLAPSPSLSFRPPGGSSTLRIVQTSNSTIVQSVPVF 204
+L P + FR G S+ L+++QT T VQ VPVF
Sbjct: 180 VLTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVF 215
>gi|194353951 hypothetical protein LOC729240 [Homo sapiens]
Length = 221
Score = 219 bits (559), Expect = 1e-57
Identities = 117/216 (54%), Positives = 139/216 (64%), Gaps = 13/216 (6%)
Query: 1 MEEPRHSKRPRFLAPNQASGGPPTEPGC------SGVDREDPVDPVQPAKPTAYVKPMRR 54
MEEPR SKR R +APNQASGGPP EPGC V+ + P P QPAKP AYVKP RR
Sbjct: 1 MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60
Query: 55 EPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVG------PGMYLVHLNDH 108
+PPAR + PPA RG+R GGS R GRGRG AG G+R G P ++ + L+ H
Sbjct: 61 QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVH-IQLDHH 119
Query: 109 GELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQT 168
GE G+QG+ E +T AFS +E PG VQEGPGP AQPE+G QEPP APGP AV Q
Sbjct: 120 GEPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQP 179
Query: 169 MLAPSPSLSFRPPGGSSTLRIVQTSNSTIVQSVPVF 204
+L P + FR G S+ L+++QT T VQ VPVF
Sbjct: 180 VLTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVF 215
>gi|194353949 hypothetical protein LOC729233 [Homo sapiens]
Length = 221
Score = 219 bits (559), Expect = 1e-57
Identities = 117/216 (54%), Positives = 139/216 (64%), Gaps = 13/216 (6%)
Query: 1 MEEPRHSKRPRFLAPNQASGGPPTEPGC------SGVDREDPVDPVQPAKPTAYVKPMRR 54
MEEPR SKR R +APNQASGGPP EPGC V+ + P P QPAKP AYVKP RR
Sbjct: 1 MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60
Query: 55 EPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVG------PGMYLVHLNDH 108
+PPAR + PPA RG+R GGS R GRGRG AG G+R G P ++ + L+ H
Sbjct: 61 QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVH-IQLDHH 119
Query: 109 GELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQT 168
GE G+QG+ E +T AFS +E PG VQEGPGP AQPE+G QEPP APGP AV Q
Sbjct: 120 GEPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQP 179
Query: 169 MLAPSPSLSFRPPGGSSTLRIVQTSNSTIVQSVPVF 204
+L P + FR G S+ L+++QT T VQ VPVF
Sbjct: 180 VLTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVF 215
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 48.1 bits (113), Expect = 5e-06
Identities = 56/194 (28%), Positives = 65/194 (33%), Gaps = 38/194 (19%)
Query: 20 GGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRR---------------------EPPA 58
GG P PG R P+ P PA P A ++P P
Sbjct: 99 GGGPQRPGPPSPRR--PLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAG 156
Query: 59 RAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLE 118
A+PA PA R G G G G G G G+ GPG LN L
Sbjct: 157 PAKPAGPAALAARAGPGPGPGPGPGPGPGP----GKPAGPGAAQT-LNGSAALLNSHHAA 211
Query: 119 ARQTPAFSFTEAALMPGIVQEGPGP---------HAAQPEVGLQEPPPAPGPVA-VARQT 168
A + AAL+P PG AA P PP AP P A A
Sbjct: 212 APAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPP 271
Query: 169 MLAPSPSLSFRPPG 182
P+P+ RPPG
Sbjct: 272 PPPPAPATLARPPG 285
Score = 42.0 bits (97), Expect = 4e-04
Identities = 52/187 (27%), Positives = 68/187 (36%), Gaps = 17/187 (9%)
Query: 15 PNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGG 74
P A+ PP P + P P PA T P P A PA P + GG
Sbjct: 250 PAPAAPSPPAAPAPAAPAAAPPPPP--PAPATLARPPGHPAGPPTAAPAVPPPAAAQNGG 307
Query: 75 SWRAGRGRGSGAGLLRALGERVGPGMYLVH-----LNDHGELGYQGQLEARQTPAFS--- 126
S A AG + + GPG + + Q A QT A S
Sbjct: 308 SAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPA 367
Query: 127 FTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPG-PVAVARQTMLAPSPSLSFRPPGGSS 185
T A+++ G +G P A PPPAPG P + + A + SLS P +S
Sbjct: 368 STAASMVIGPTMQGALPSPA------AVPPPAPGTPTGLPKGAAGAVTQSLSRTPTATTS 421
Query: 186 TLRIVQT 192
+R T
Sbjct: 422 GIRATLT 428
Score = 31.2 bits (69), Expect = 0.67
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 119 ARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSPSLSF 178
A Q P S T+ + G+ ++G QP + + PP PG + Q L +P ++
Sbjct: 716 ALQPPVLSLTQPTQV-GVGKQG------QPTPLVIQQPPKPGALIRPPQVTLTQTPMVAL 768
Query: 179 RPPGGSSTLRIVQTSNSTIVQSVPV 203
R P L Q +Q VPV
Sbjct: 769 RQPHNRIMLTTPQQIQLNPLQPVPV 793
>gi|224465238 hypothetical protein LOC283999 [Homo sapiens]
Length = 394
Score = 41.6 bits (96), Expect = 5e-04
Identities = 47/138 (34%), Positives = 53/138 (38%), Gaps = 8/138 (5%)
Query: 51 PMRREPPARAQPAPPAGRGQRGGGSWRAGRGRGSG-AGLLRALGERVGPGMYLVHLNDHG 109
P R PA P+PPAGR G + RA GR G LRA G R G LVH G
Sbjct: 165 PRRPRGPATPDPSPPAGRPH--GPAGRAAPGRRPGCTAQLRAPGRR-GRQRLLVHPGGGG 221
Query: 110 ELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQ-PEVGLQEPPPAPGPVAVA--- 165
+Q AR+ + A + G G H Q GL A P A A
Sbjct: 222 RRQWQRLARARRAALLALGALAHLRRCPDTGGGQHLHQLLAPGLCGDGAAVWPAAHAGRP 281
Query: 166 RQTMLAPSPSLSFRPPGG 183
RQ L P L GG
Sbjct: 282 RQLRLVHGPGLGLLCLGG 299
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 41.6 bits (96), Expect = 5e-04
Identities = 46/162 (28%), Positives = 57/162 (35%), Gaps = 21/162 (12%)
Query: 10 PRFLAPNQASG-GPPTEPGCSGVDREDPVDPVQPAKPTAYVK--------PMRREPPARA 60
P + P Q GPP G G P P P +K P + PP A
Sbjct: 1230 PGAIIPGQTGNRGPPGSRGSPGA----PGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTA 1285
Query: 61 QPAPPAGR-GQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEA 119
P GR G G RG G GE+ PG +L + G +G +G
Sbjct: 1286 GDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPG-FLGSIGPPGPIGPKGPPGV 1344
Query: 120 RQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGP 161
R P + +PG PGP E G+Q P PGP
Sbjct: 1345 RGDPGT--LKIISLPG----SPGPPGTPGEPGMQGEPGPPGP 1380
Score = 28.9 bits (63), Expect = 3.3
Identities = 40/156 (25%), Positives = 54/156 (34%), Gaps = 30/156 (19%)
Query: 21 GPPTEPGCSGV--DREDPVDPVQPAKPTAYVKPMRREPPA-RAQPAPPAGRGQRGGGSWR 77
G P PG G+ D+ +P Y + R PP P P G++G
Sbjct: 1039 GRPGLPGIHGLQGDKGEP----------GYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQP 1088
Query: 78 AGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIV 137
G AG A G PG+ HG+LG++G P +PG
Sbjct: 1089 GPPGHLGPAGPEGAPGSPGSPGLP-GKPGPHGDLGFKGIKGLLGPPGIRGPPG--LPGFP 1145
Query: 138 -------------QEG-PGPHAAQPEVGLQEPPPAP 159
++G PGP + E GL PP P
Sbjct: 1146 GSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGP 1181
Score = 28.1 bits (61), Expect = 5.6
Identities = 40/140 (28%), Positives = 47/140 (33%), Gaps = 43/140 (30%)
Query: 21 GPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGR 80
GP E SG ++ D P P P + P A PA P G G +G
Sbjct: 581 GPKGELALSG-EKGDQGPPGDPGSPGS---------PGPAGPAGPPGYGPQGE------- 623
Query: 81 GRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIVQEG 140
GL G PG GE G +G+L TP +PG
Sbjct: 624 -----PGLQGTQGVPGAPG-------PPGEAGPRGELSV-STP---------VPG----P 657
Query: 141 PGPHAAQPEVGLQEPPPAPG 160
PGP G Q PP PG
Sbjct: 658 PGPPGPPGHPGPQGPPGIPG 677
Score = 27.3 bits (59), Expect = 9.6
Identities = 29/92 (31%), Positives = 34/92 (36%), Gaps = 19/92 (20%)
Query: 26 PGCSGVD----REDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGG-------- 73
PG G D ++ + P PT Y + E P PP RG RG
Sbjct: 320 PGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQ-EKGDEGTPGPPGPRGARGPQGPSGPPG 378
Query: 74 -----GSWRAG-RGRGSGAGLLRALGERVGPG 99
GS R G RG GL + GER PG
Sbjct: 379 VPGSPGSSRPGLRGAPGWPGLKGSKGERGRPG 410
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 41.6 bits (96), Expect = 5e-04
Identities = 46/162 (28%), Positives = 57/162 (35%), Gaps = 21/162 (12%)
Query: 10 PRFLAPNQASG-GPPTEPGCSGVDREDPVDPVQPAKPTAYVK--------PMRREPPARA 60
P + P Q GPP G G P P P +K P + PP A
Sbjct: 1230 PGAIIPGQTGNRGPPGSRGSPGA----PGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTA 1285
Query: 61 QPAPPAGR-GQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEA 119
P GR G G RG G GE+ PG +L + G +G +G
Sbjct: 1286 GDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPG-FLGSIGPPGPIGPKGPPGV 1344
Query: 120 RQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGP 161
R P + +PG PGP E G+Q P PGP
Sbjct: 1345 RGDPGT--LKIISLPG----SPGPPGTPGEPGMQGEPGPPGP 1380
Score = 28.9 bits (63), Expect = 3.3
Identities = 40/156 (25%), Positives = 54/156 (34%), Gaps = 30/156 (19%)
Query: 21 GPPTEPGCSGV--DREDPVDPVQPAKPTAYVKPMRREPPA-RAQPAPPAGRGQRGGGSWR 77
G P PG G+ D+ +P Y + R PP P P G++G
Sbjct: 1039 GRPGLPGIHGLQGDKGEP----------GYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQP 1088
Query: 78 AGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIV 137
G AG A G PG+ HG+LG++G P +PG
Sbjct: 1089 GPPGHLGPAGPEGAPGSPGSPGLP-GKPGPHGDLGFKGIKGLLGPPGIRGPPG--LPGFP 1145
Query: 138 -------------QEG-PGPHAAQPEVGLQEPPPAP 159
++G PGP + E GL PP P
Sbjct: 1146 GSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGP 1181
Score = 28.1 bits (61), Expect = 5.6
Identities = 40/140 (28%), Positives = 47/140 (33%), Gaps = 43/140 (30%)
Query: 21 GPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGR 80
GP E SG ++ D P P P + P A PA P G G +G
Sbjct: 581 GPKGELALSG-EKGDQGPPGDPGSPGS---------PGPAGPAGPPGYGPQGE------- 623
Query: 81 GRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIVQEG 140
GL G PG GE G +G+L TP +PG
Sbjct: 624 -----PGLQGTQGVPGAPG-------PPGEAGPRGELSV-STP---------VPG----P 657
Query: 141 PGPHAAQPEVGLQEPPPAPG 160
PGP G Q PP PG
Sbjct: 658 PGPPGPPGHPGPQGPPGIPG 677
Score = 27.3 bits (59), Expect = 9.6
Identities = 29/92 (31%), Positives = 34/92 (36%), Gaps = 19/92 (20%)
Query: 26 PGCSGVD----REDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGG-------- 73
PG G D ++ + P PT Y + E P PP RG RG
Sbjct: 320 PGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQ-EKGDEGTPGPPGPRGARGPQGPSGPPG 378
Query: 74 -----GSWRAG-RGRGSGAGLLRALGERVGPG 99
GS R G RG GL + GER PG
Sbjct: 379 VPGSPGSSRPGLRGAPGWPGLKGSKGERGRPG 410
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 41.6 bits (96), Expect = 5e-04
Identities = 46/162 (28%), Positives = 57/162 (35%), Gaps = 21/162 (12%)
Query: 10 PRFLAPNQASG-GPPTEPGCSGVDREDPVDPVQPAKPTAYVK--------PMRREPPARA 60
P + P Q GPP G G P P P +K P + PP A
Sbjct: 1230 PGAIIPGQTGNRGPPGSRGSPGA----PGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTA 1285
Query: 61 QPAPPAGR-GQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEA 119
P GR G G RG G GE+ PG +L + G +G +G
Sbjct: 1286 GDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPG-FLGSIGPPGPIGPKGPPGV 1344
Query: 120 RQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGP 161
R P + +PG PGP E G+Q P PGP
Sbjct: 1345 RGDPGT--LKIISLPG----SPGPPGTPGEPGMQGEPGPPGP 1380
Score = 28.9 bits (63), Expect = 3.3
Identities = 40/156 (25%), Positives = 54/156 (34%), Gaps = 30/156 (19%)
Query: 21 GPPTEPGCSGV--DREDPVDPVQPAKPTAYVKPMRREPPA-RAQPAPPAGRGQRGGGSWR 77
G P PG G+ D+ +P Y + R PP P P G++G
Sbjct: 1039 GRPGLPGIHGLQGDKGEP----------GYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQP 1088
Query: 78 AGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIV 137
G AG A G PG+ HG+LG++G P +PG
Sbjct: 1089 GPPGHLGPAGPEGAPGSPGSPGLP-GKPGPHGDLGFKGIKGLLGPPGIRGPPG--LPGFP 1145
Query: 138 -------------QEG-PGPHAAQPEVGLQEPPPAP 159
++G PGP + E GL PP P
Sbjct: 1146 GSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGP 1181
Score = 28.1 bits (61), Expect = 5.6
Identities = 40/140 (28%), Positives = 47/140 (33%), Gaps = 43/140 (30%)
Query: 21 GPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGR 80
GP E SG ++ D P P P + P A PA P G G +G
Sbjct: 581 GPKGELALSG-EKGDQGPPGDPGSPGS---------PGPAGPAGPPGYGPQGE------- 623
Query: 81 GRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIVQEG 140
GL G PG GE G +G+L TP +PG
Sbjct: 624 -----PGLQGTQGVPGAPG-------PPGEAGPRGELSV-STP---------VPG----P 657
Query: 141 PGPHAAQPEVGLQEPPPAPG 160
PGP G Q PP PG
Sbjct: 658 PGPPGPPGHPGPQGPPGIPG 677
Score = 27.3 bits (59), Expect = 9.6
Identities = 29/92 (31%), Positives = 34/92 (36%), Gaps = 19/92 (20%)
Query: 26 PGCSGVD----REDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGG-------- 73
PG G D ++ + P PT Y + E P PP RG RG
Sbjct: 320 PGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQ-EKGDEGTPGPPGPRGARGPQGPSGPPG 378
Query: 74 -----GSWRAG-RGRGSGAGLLRALGERVGPG 99
GS R G RG GL + GER PG
Sbjct: 379 VPGSPGSSRPGLRGAPGWPGLKGSKGERGRPG 410
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 41.6 bits (96), Expect = 5e-04
Identities = 46/162 (28%), Positives = 57/162 (35%), Gaps = 21/162 (12%)
Query: 10 PRFLAPNQASG-GPPTEPGCSGVDREDPVDPVQPAKPTAYVK--------PMRREPPARA 60
P + P Q GPP G G P P P +K P + PP A
Sbjct: 1230 PGAIIPGQTGNRGPPGSRGSPGA----PGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTA 1285
Query: 61 QPAPPAGR-GQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEA 119
P GR G G RG G GE+ PG +L + G +G +G
Sbjct: 1286 GDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPG-FLGSIGPPGPIGPKGPPGV 1344
Query: 120 RQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGP 161
R P + +PG PGP E G+Q P PGP
Sbjct: 1345 RGDPGT--LKIISLPG----SPGPPGTPGEPGMQGEPGPPGP 1380
Score = 28.9 bits (63), Expect = 3.3
Identities = 40/156 (25%), Positives = 54/156 (34%), Gaps = 30/156 (19%)
Query: 21 GPPTEPGCSGV--DREDPVDPVQPAKPTAYVKPMRREPPA-RAQPAPPAGRGQRGGGSWR 77
G P PG G+ D+ +P Y + R PP P P G++G
Sbjct: 1039 GRPGLPGIHGLQGDKGEP----------GYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQP 1088
Query: 78 AGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIV 137
G AG A G PG+ HG+LG++G P +PG
Sbjct: 1089 GPPGHLGPAGPEGAPGSPGSPGLP-GKPGPHGDLGFKGIKGLLGPPGIRGPPG--LPGFP 1145
Query: 138 -------------QEG-PGPHAAQPEVGLQEPPPAP 159
++G PGP + E GL PP P
Sbjct: 1146 GSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGP 1181
Score = 28.1 bits (61), Expect = 5.6
Identities = 40/140 (28%), Positives = 47/140 (33%), Gaps = 43/140 (30%)
Query: 21 GPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGR 80
GP E SG ++ D P P P + P A PA P G G +G
Sbjct: 581 GPKGELALSG-EKGDQGPPGDPGSPGS---------PGPAGPAGPPGYGPQGE------- 623
Query: 81 GRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIVQEG 140
GL G PG GE G +G+L TP +PG
Sbjct: 624 -----PGLQGTQGVPGAPG-------PPGEAGPRGELSV-STP---------VPG----P 657
Query: 141 PGPHAAQPEVGLQEPPPAPG 160
PGP G Q PP PG
Sbjct: 658 PGPPGPPGHPGPQGPPGIPG 677
Score = 27.3 bits (59), Expect = 9.6
Identities = 29/92 (31%), Positives = 34/92 (36%), Gaps = 19/92 (20%)
Query: 26 PGCSGVD----REDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGG-------- 73
PG G D ++ + P PT Y + E P PP RG RG
Sbjct: 320 PGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQ-EKGDEGTPGPPGPRGARGPQGPSGPPG 378
Query: 74 -----GSWRAG-RGRGSGAGLLRALGERVGPG 99
GS R G RG GL + GER PG
Sbjct: 379 VPGSPGSSRPGLRGAPGWPGLKGSKGERGRPG 410
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 41.2 bits (95), Expect = 6e-04
Identities = 44/142 (30%), Positives = 55/142 (38%), Gaps = 12/142 (8%)
Query: 14 APNQASGGPPTEPGCSGVDREDP-VDPVQPAKPTAYVKPMRREPPARAQPAPPAGR---- 68
AP P PG SGVD + VD +P P + P P R +PAPP R
Sbjct: 1144 APVGTGTAPGGGPG-SGVDAKAGWVDNTRPQPPPPPLPPPPEAQPRRLEPAPPRARPEVA 1202
Query: 69 --GQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFS 126
G+ G RAG ER GP M + L+ G Q++AR S
Sbjct: 1203 PEGEPGAPDSRAGGDTALSGDGDPPKPERKGPEMPRLFLDLGPPQGNSEQIKAR----LS 1258
Query: 127 FTEAALMPGIVQEGPGPHAAQP 148
AL P + PGP +P
Sbjct: 1259 RLSLALPPLTLTPFPGPGPRRP 1280
Score = 31.6 bits (70), Expect = 0.51
Identities = 33/126 (26%), Positives = 44/126 (34%), Gaps = 16/126 (12%)
Query: 37 VDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERV 96
+DP+ A Y P R PPA P PP S S L + G +
Sbjct: 762 LDPLMGAAAPQY--PGRGPPPAPPPPPPPPRAPADPAASPDPPSAVASPGSGLSSPGPKP 819
Query: 97 GPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPP 156
G + GY+ + AF AA G+ + P P+ G PP
Sbjct: 820 G------------DSGYETETPFSPEGAFPGGGAAEEEGVPRPRAPPEP--PDPGAPRPP 865
Query: 157 PAPGPV 162
P PGP+
Sbjct: 866 PDPGPL 871
Score = 28.9 bits (63), Expect = 3.3
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 14 APNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPP 65
+P P +PG SG + E P P + A P P RA P PP
Sbjct: 807 SPGSGLSSPGPKPGDSGYETETPFSP-EGAFPGGGAAEEEGVPRPRAPPEPP 857
Score = 27.3 bits (59), Expect = 9.6
Identities = 35/124 (28%), Positives = 47/124 (37%), Gaps = 19/124 (15%)
Query: 39 PVQPAKPTAYVKP--MRREPPARAQP-APPAGRGQRGGGSWRAGRGRGSGAGLLRALGER 95
P+ PA ++P RR P P AP AGR G G RA G G+ G
Sbjct: 1103 PLGPAPKNGTLEPGTERRAPETGGAPRAPGAGRLDLGSGG-RAPVGTGTAPG-------- 1153
Query: 96 VGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEP 155
GPG + + G+ + P P ++ P P A+PEV +
Sbjct: 1154 GGPGSGV-----DAKAGWVDNTRPQPPPPPLPPPPEAQPRRLE--PAPPRARPEVAPEGE 1206
Query: 156 PPAP 159
P AP
Sbjct: 1207 PGAP 1210
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 40.8 bits (94), Expect = 8e-04
Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 21 GPPTEPGCSGVD-----REDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGS 75
GPP +PG SG+D + DP D P P A +P PP + P+ GR R G
Sbjct: 1268 GPPGDPGVSGIDGSPGEKGDPGDVGGPGPPGASGEPGAPGPPGKRGPSGHMGREGREGEK 1327
Query: 76 WRAGR-GRGSGAGLLRALGERVGPG 99
G G G +G R PG
Sbjct: 1328 GAKGEPGPDGPPGRTGPMGARGPPG 1352
Score = 32.3 bits (72), Expect = 0.30
Identities = 40/158 (25%), Positives = 49/158 (31%), Gaps = 46/158 (29%)
Query: 10 PRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRG 69
PR L + S GP PG +G+D P A+ PP G
Sbjct: 600 PRGLLGPRGSPGPTGRPGVTGID---------------------GAPGAKGNVGPPGEPG 638
Query: 70 QRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVH--LNDHGELGYQGQLEARQTPAFSF 127
G +G GL+ GE+ PG + G LG+ G
Sbjct: 639 PPGQQGNHGSQGLPGPQGLIGTPGEKGPPGNPGIPGLPGSDGPLGHPG------------ 686
Query: 128 TEAALMPGIVQEGP-GPHAAQPEVGLQEPPPAPGPVAV 164
EGP G AQ G PP PGP V
Sbjct: 687 ----------HEGPTGEKGAQGPPGSAGPPGYPGPRGV 714
Score = 29.3 bits (64), Expect = 2.5
Identities = 34/117 (29%), Positives = 41/117 (35%), Gaps = 23/117 (19%)
Query: 53 RREPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLV-----HLND 107
R +P A QP P GQ G +G G G + PG H
Sbjct: 841 RGQPGATGQPGPKGDVGQDGAPGIPGEKGLPGLQGPPGFPGPKGPPGHQGKDGRPGHPGQ 900
Query: 108 HGELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEV---GLQEPPPAPGP 161
GELG+QGQ T G++ GP EV G + PP PGP
Sbjct: 901 RGELGFQGQ-----------TGPPGPAGVL----GPQGKTGEVGPLGERGPPGPPGP 942
Score = 27.7 bits (60), Expect = 7.4
Identities = 38/156 (24%), Positives = 48/156 (30%), Gaps = 20/156 (12%)
Query: 21 GPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRRE--------PPARAQPAPPAGRGQRG 72
GPP G G+ P+ P P P E P + G G
Sbjct: 1046 GPPGPTGKDGIP-----GPLGPLGPPGAAGPSGEEGDKGDVGAPGHKGSKGDKGDAGPPG 1100
Query: 73 GGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQ-----LEARQTPAFSF 127
R G G A G R PG++ D G G+ G L+ P
Sbjct: 1101 QPGIRGPAGHPGPPGADGAQGRRGPPGLF-GQKGDDGVRGFVGVIGPPGLQGLPGPPGEK 1159
Query: 128 TEAALMPGIVQEG-PGPHAAQPEVGLQEPPPAPGPV 162
E + + G PGP Q G + P PG V
Sbjct: 1160 GEVGDVGSMGPHGAPGPRGPQGPTGSEGTPGLPGGV 1195
Score = 27.3 bits (59), Expect = 9.6
Identities = 30/104 (28%), Positives = 36/104 (34%), Gaps = 6/104 (5%)
Query: 62 PAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQ 121
P PP G G +G +G G++ PG G G G L
Sbjct: 1213 PGPPGAPGIPGPKGDIGEKGDSGPSGAAGPPGKKGPPGEDGAK-GSVGPTGLPGDLGPPG 1271
Query: 122 TPAFSFTEAALM----PGIVQEGPGPHAAQPEVGLQEPPPAPGP 161
P S + + PG V GPGP A E G PP GP
Sbjct: 1272 DPGVSGIDGSPGEKGDPGDVG-GPGPPGASGEPGAPGPPGKRGP 1314
>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
G-T [Homo sapiens]
Length = 392
Score = 40.8 bits (94), Expect = 8e-04
Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Query: 4 PRHSKRPRFLAPNQASGGPPTE-PGCSGVDREDPVDPVQPAKPTAYVKPMRREPPAR--- 59
PR RPRFL + GG P P G D + +P+ PM+R PP R
Sbjct: 99 PRSRGRPRFLRGTRGGGGGPRRSPSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVG 158
Query: 60 --AQPAPPAGRGQRGGGSWR----AGRGRGSGAG 87
+ A P+G + GG R A RGR +G
Sbjct: 159 PPPKRAAPSGPARSSGGGMRGRALAVRGRDGYSG 192
Score = 28.5 bits (62), Expect = 4.3
Identities = 36/128 (28%), Positives = 45/128 (35%), Gaps = 37/128 (28%)
Query: 41 QPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGM 100
Q KP A+ R PP R++ P RG RGGG G R R GP
Sbjct: 83 QATKP-AFESSRRGPPPPRSRGRPRFLRGTRGGG------------GGPRRSPSRGGP-- 127
Query: 101 YLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPG 160
+D G GY + R + A P ++ GP P P PP
Sbjct: 128 -----DDDG--GYTADFDLRPSRA---------PMPMKRGPPPRRVGP------PPKRAA 165
Query: 161 PVAVARQT 168
P AR +
Sbjct: 166 PSGPARSS 173
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 40.4 bits (93), Expect = 0.001
Identities = 47/168 (27%), Positives = 57/168 (33%), Gaps = 24/168 (14%)
Query: 12 FLAPNQASGGP--------PTEPGCSGVDRED----PVDPVQPAKPTAYVKPMRREPPAR 59
F P A+G P P PG G+ +D P PA P P+
Sbjct: 604 FPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSG 663
Query: 60 AQ--PAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQL 117
Q P PP G+ G + G GL+ GER PG + G G QG
Sbjct: 664 FQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPG-------ERGSPGAQGLQ 716
Query: 118 EARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVA 165
R P T+ P GP AQ GLQ P G +A
Sbjct: 717 GPRGLPGTPGTDG---PKGASGPAGPPGAQGPPGLQGMPGERGAAGIA 761
Score = 36.2 bits (82), Expect = 0.021
Identities = 45/152 (29%), Positives = 53/152 (34%), Gaps = 16/152 (10%)
Query: 17 QASGGPPTEPGCSGV--DREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGG 74
Q + G P EPG SG R P P +P KP + R P P RG G
Sbjct: 224 QGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGE--RGPPGPQGARGFPGTP 281
Query: 75 SWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMP 134
+G GL A GE PG+ GE G G + R P
Sbjct: 282 GLPGVKGHRGYPGLDGAKGEAGAPGV-KGESGSPGENGSPGPMGPRGLPGER-------- 332
Query: 135 GIVQEGP-GPHAAQPEVGLQEPPPAPGPVAVA 165
+ GP G A+ G P PGPV A
Sbjct: 333 --GRTGPAGAAGARGNDGQPGPAGPPGPVGPA 362
Score = 31.6 bits (70), Expect = 0.51
Identities = 38/149 (25%), Positives = 47/149 (31%), Gaps = 13/149 (8%)
Query: 17 QASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSW 76
Q + G P PG GV + AK A ++ E + + P G RG
Sbjct: 272 QGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRG---L 328
Query: 77 RAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGI 136
RGR AG A G PG G G + P F A
Sbjct: 329 PGERGRTGPAGAAGARGNDGQPG----------PAGPPGPVGPAGGPGFPGAPGAKGEAG 378
Query: 137 VQEGPGPHAAQPEVGLQEPPPAPGPVAVA 165
GP AQ G P +PGP +
Sbjct: 379 PTGARGPEGAQGPRGEPGTPGSPGPAGAS 407
Score = 31.6 bits (70), Expect = 0.51
Identities = 37/157 (23%), Positives = 52/157 (33%), Gaps = 4/157 (2%)
Query: 4 PRHSKRPRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPA 63
P ++ P + G P PG +G D + AK +A + P
Sbjct: 379 PTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRG 438
Query: 64 PPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTP 123
PP +G G + G AG G + PG G G +G+ AR P
Sbjct: 439 PPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGP-AGPQGAPGPAGEEGKRGARGEP 497
Query: 124 AFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPG 160
+ P + PG + GL P APG
Sbjct: 498 G---GVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPG 531
Score = 31.2 bits (69), Expect = 0.67
Identities = 44/165 (26%), Positives = 52/165 (31%), Gaps = 27/165 (16%)
Query: 10 PRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRG 69
P LA GP + G G D +D V P P P + PA Q P RG
Sbjct: 90 PTDLATASGQPGPKGQKGEPG-DIKDIVGPKGPPGP---------QGPAGEQ-GPRGDRG 138
Query: 70 QRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTE 129
+G RGR G G PG G G G A+ F
Sbjct: 139 DKGEKGAPGPRGRDGEPGTPGNPGPPGPPG-------PPGPPGLGGNFAAQMAGGFDEKA 191
Query: 130 AALMPGIVQEG---------PGPHAAQPEVGLQEPPPAPGPVAVA 165
G++Q PGP A G Q P PG V+
Sbjct: 192 GGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVS 236
Score = 31.2 bits (69), Expect = 0.67
Identities = 41/147 (27%), Positives = 46/147 (31%), Gaps = 16/147 (10%)
Query: 21 GPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQ--PAPPAGRGQRGGGSWRA 78
GPP PG +G P PM PA A+ P RG +G
Sbjct: 1071 GPPGSPGPAG-----PTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPG 1125
Query: 79 GRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPA----FSFTEAALMP 134
RG G G PG D G G G R P A +P
Sbjct: 1126 ERGLKGHRGFTGLQGLPGPPGPS----GDQGASGPAGPSGPRGPPGPVGPSGKDGANGIP 1181
Query: 135 GIVQEGPGPHAAQPEVGLQEPPPAPGP 161
G + PGP E G PP PGP
Sbjct: 1182 GPIGP-PGPRGRSGETGPAGPPGNPGP 1207
Score = 29.3 bits (64), Expect = 2.5
Identities = 28/100 (28%), Positives = 31/100 (31%), Gaps = 4/100 (4%)
Query: 21 GPPTEPGCSGVD-REDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAG 79
GP EPG G P P P P EP P G+ G +
Sbjct: 999 GPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAG-EPGREGSPGADGPPGRDGAAGVKGD 1057
Query: 80 RGRGSGAGLLRALGE--RVGPGMYLVHLNDHGELGYQGQL 117
RG G A G GP D GE G QG +
Sbjct: 1058 RGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPM 1097
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 40.4 bits (93), Expect = 0.001
Identities = 47/168 (27%), Positives = 57/168 (33%), Gaps = 24/168 (14%)
Query: 12 FLAPNQASGGP--------PTEPGCSGVDRED----PVDPVQPAKPTAYVKPMRREPPAR 59
F P A+G P P PG G+ +D P PA P P+
Sbjct: 535 FPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSG 594
Query: 60 AQ--PAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQL 117
Q P PP G+ G + G GL+ GER PG + G G QG
Sbjct: 595 FQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPG-------ERGSPGAQGLQ 647
Query: 118 EARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVA 165
R P T+ P GP AQ GLQ P G +A
Sbjct: 648 GPRGLPGTPGTDG---PKGASGPAGPPGAQGPPGLQGMPGERGAAGIA 692
Score = 36.2 bits (82), Expect = 0.021
Identities = 45/152 (29%), Positives = 53/152 (34%), Gaps = 16/152 (10%)
Query: 17 QASGGPPTEPGCSGV--DREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGG 74
Q + G P EPG SG R P P +P KP + R P P RG G
Sbjct: 155 QGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGE--RGPPGPQGARGFPGTP 212
Query: 75 SWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMP 134
+G GL A GE PG+ GE G G + R P
Sbjct: 213 GLPGVKGHRGYPGLDGAKGEAGAPGV-KGESGSPGENGSPGPMGPRGLPGER-------- 263
Query: 135 GIVQEGP-GPHAAQPEVGLQEPPPAPGPVAVA 165
+ GP G A+ G P PGPV A
Sbjct: 264 --GRTGPAGAAGARGNDGQPGPAGPPGPVGPA 293
Score = 31.6 bits (70), Expect = 0.51
Identities = 38/149 (25%), Positives = 47/149 (31%), Gaps = 13/149 (8%)
Query: 17 QASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSW 76
Q + G P PG GV + AK A ++ E + + P G RG
Sbjct: 203 QGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRG---L 259
Query: 77 RAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGI 136
RGR AG A G PG G G + P F A
Sbjct: 260 PGERGRTGPAGAAGARGNDGQPG----------PAGPPGPVGPAGGPGFPGAPGAKGEAG 309
Query: 137 VQEGPGPHAAQPEVGLQEPPPAPGPVAVA 165
GP AQ G P +PGP +
Sbjct: 310 PTGARGPEGAQGPRGEPGTPGSPGPAGAS 338
Score = 31.6 bits (70), Expect = 0.51
Identities = 37/157 (23%), Positives = 52/157 (33%), Gaps = 4/157 (2%)
Query: 4 PRHSKRPRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPA 63
P ++ P + G P PG +G D + AK +A + P
Sbjct: 310 PTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRG 369
Query: 64 PPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTP 123
PP +G G + G AG G + PG G G +G+ AR P
Sbjct: 370 PPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGP-AGPQGAPGPAGEEGKRGARGEP 428
Query: 124 AFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPG 160
+ P + PG + GL P APG
Sbjct: 429 G---GVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPG 462
Score = 31.2 bits (69), Expect = 0.67
Identities = 41/147 (27%), Positives = 46/147 (31%), Gaps = 16/147 (10%)
Query: 21 GPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQ--PAPPAGRGQRGGGSWRA 78
GPP PG +G P PM PA A+ P RG +G
Sbjct: 1002 GPPGSPGPAG-----PTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPG 1056
Query: 79 GRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPA----FSFTEAALMP 134
RG G G PG D G G G R P A +P
Sbjct: 1057 ERGLKGHRGFTGLQGLPGPPGPS----GDQGASGPAGPSGPRGPPGPVGPSGKDGANGIP 1112
Query: 135 GIVQEGPGPHAAQPEVGLQEPPPAPGP 161
G + PGP E G PP PGP
Sbjct: 1113 GPIGP-PGPRGRSGETGPAGPPGNPGP 1138
Score = 29.3 bits (64), Expect = 2.5
Identities = 28/100 (28%), Positives = 31/100 (31%), Gaps = 4/100 (4%)
Query: 21 GPPTEPGCSGVD-REDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAG 79
GP EPG G P P P P EP P G+ G +
Sbjct: 930 GPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAG-EPGREGSPGADGPPGRDGAAGVKGD 988
Query: 80 RGRGSGAGLLRALGE--RVGPGMYLVHLNDHGELGYQGQL 117
RG G A G GP D GE G QG +
Sbjct: 989 RGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPM 1028
Score = 28.9 bits (63), Expect = 3.3
Identities = 41/154 (26%), Positives = 49/154 (31%), Gaps = 27/154 (17%)
Query: 21 GPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGR 80
GP + G G D +D V P P P + PA Q P RG +G R
Sbjct: 32 GPKGQKGEPG-DIKDIVGPKGPPGP---------QGPAGEQ-GPRGDRGDKGEKGAPGPR 80
Query: 81 GRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIVQEG 140
GR G G PG G G G A+ F G++Q
Sbjct: 81 GRDGEPGTPGNPGPPGPPG-------PPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGP 133
Query: 141 ---------PGPHAAQPEVGLQEPPPAPGPVAVA 165
PGP A G Q P PG V+
Sbjct: 134 MGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVS 167
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 40.4 bits (93), Expect = 0.001
Identities = 48/170 (28%), Positives = 61/170 (35%), Gaps = 28/170 (16%)
Query: 16 NQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGS 75
++ S G P PG G PV P PT P +A P +G++G
Sbjct: 2270 DRGSPGVPGSPGLPG-----PVGPKGEPGPTG--------APGQAVVGLPGAKGEKGAPG 2316
Query: 76 WRAGR-----GRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEA 130
AG G GL GE+ G + G+ G GQ A F
Sbjct: 2317 GLAGDLVGEPGAKGDRGLPGPRGEKGEAG----RAGEPGDPGEDGQKGAPGPKGFKGDPG 2372
Query: 131 ALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQT-----MLAPSPS 175
+PG PGP + ++GL P APG V QT M P PS
Sbjct: 2373 VGVPGSPGP-PGPPGVKGDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGPS 2421
Score = 29.6 bits (65), Expect = 1.9
Identities = 51/188 (27%), Positives = 66/188 (35%), Gaps = 46/188 (24%)
Query: 11 RFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARA----QPAPPA 66
R L ++ GP PG + +R P +P KP P RA + P
Sbjct: 2002 RGLKGDRGDPGPQGPPGLALGERGPPGPSGLAGEPG---KPGIPGLPGRAGGVGEAGRPG 2058
Query: 67 GRGQRGGGSWRAGRGRGSGAGLLRALG-----------ERVGPGMYLVHLNDHGELGYQG 115
RG+RG R +GR GL G + GPG+ GE G G
Sbjct: 2059 ERGERGEKGERGEQGRDGPPGLPGTPGPPGPPGPKVSVDEPGPGL-------SGEQGPPG 2111
Query: 116 QLEARQTPAFSFTEAAL----MPGIVQE--GPGPHA-------------AQPE--VGLQE 154
A+ P + + +PGI + PGP A PE GLQ
Sbjct: 2112 LKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQG 2171
Query: 155 PPPAPGPV 162
P PGPV
Sbjct: 2172 PRGPPGPV 2179
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 40.4 bits (93), Expect = 0.001
Identities = 46/177 (25%), Positives = 65/177 (36%), Gaps = 26/177 (14%)
Query: 17 QASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREP-----PARAQPAPPAGRGQR 71
Q S P PG SG + QP+ P + MR +P P Q PP+G Q
Sbjct: 355 QRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQG 414
Query: 72 GG------GSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAF 125
G GS R + G ++ +G Y + +G+ G G + QTP +
Sbjct: 415 HGYPGQPYGSQTPQRYPMTMQGRAQS---AMGGLSYTQQIPPYGQQGPSGYGQQGQTPYY 471
Query: 126 SFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSPSL-SFRPP 181
+ Q+ P P QP Q P P +Q + P L S +PP
Sbjct: 472 N-----------QQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPP 517
Score = 31.6 bits (70), Expect = 0.51
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 17/68 (25%)
Query: 14 APNQASGGPPTEPGCSGVDREDPVDPVQ-----------------PAKPTAYVKPMRREP 56
A Q++G P P GV+R D + P P+A V PM R P
Sbjct: 1509 ANRQSTGSAPQGPAYHGVNRTDEMLHTDQRANHEGSWPSHGTRQPPYGPSAPVPPMTRPP 1568
Query: 57 PARAQPAP 64
P+ QP P
Sbjct: 1569 PSNYQPPP 1576
Score = 28.1 bits (61), Expect = 5.6
Identities = 35/135 (25%), Positives = 49/135 (36%), Gaps = 18/135 (13%)
Query: 55 EPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQ 114
E PA P P Q G S G G G+G+G GPG N +G G +
Sbjct: 59 EGPAVGPPQPLGKELQDGAESNGGGGGGGAGSG--------GGPGAEPDLKNSNGNAGPR 110
Query: 115 GQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPG---PVAVARQTMLA 171
L T G+ G PH+A + PPPA G P + + A
Sbjct: 111 PALNNNLTEPPGGGGGGSSDGV---GAPPHSAAAAL----PPPAYGFGQPYGRSPSAVAA 163
Query: 172 PSPSLSFRPPGGSST 186
+ ++ + GG +
Sbjct: 164 AAAAVFHQQHGGQQS 178
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 40.4 bits (93), Expect = 0.001
Identities = 46/177 (25%), Positives = 65/177 (36%), Gaps = 26/177 (14%)
Query: 17 QASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREP-----PARAQPAPPAGRGQR 71
Q S P PG SG + QP+ P + MR +P P Q PP+G Q
Sbjct: 355 QRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQG 414
Query: 72 GG------GSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAF 125
G GS R + G ++ +G Y + +G+ G G + QTP +
Sbjct: 415 HGYPGQPYGSQTPQRYPMTMQGRAQS---AMGGLSYTQQIPPYGQQGPSGYGQQGQTPYY 471
Query: 126 SFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSPSL-SFRPP 181
+ Q+ P P QP Q P P +Q + P L S +PP
Sbjct: 472 N-----------QQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPP 517
Score = 28.1 bits (61), Expect = 5.6
Identities = 35/135 (25%), Positives = 49/135 (36%), Gaps = 18/135 (13%)
Query: 55 EPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQ 114
E PA P P Q G S G G G+G+G GPG N +G G +
Sbjct: 59 EGPAVGPPQPLGKELQDGAESNGGGGGGGAGSG--------GGPGAEPDLKNSNGNAGPR 110
Query: 115 GQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPG---PVAVARQTMLA 171
L T G+ G PH+A + PPPA G P + + A
Sbjct: 111 PALNNNLTEPPGGGGGGSSDGV---GAPPHSAAAAL----PPPAYGFGQPYGRSPSAVAA 163
Query: 172 PSPSLSFRPPGGSST 186
+ ++ + GG +
Sbjct: 164 AAAAVFHQQHGGQQS 178
>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
sapiens]
Length = 678
Score = 40.4 bits (93), Expect = 0.001
Identities = 50/162 (30%), Positives = 61/162 (37%), Gaps = 29/162 (17%)
Query: 22 PPTEPGCSGV-DREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGR 80
PP P G +R P P P P R PPA P+PPA G RGGG+ R
Sbjct: 81 PPAAPRRRGSPERARPPPPPPPPAPP-------RPPPAA--PSPPAAPGPRGGGASPGAR 131
Query: 81 ------GRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMP 134
GS + + G G G L+ N H E R PA A P
Sbjct: 132 RSDFLQKTGSNSFTVHPRGLHRGAGARLLS-NGH------SAPEPRAGPANRL--AGSPP 182
Query: 135 GIVQEGPGPHAAQPEVGLQEPPPAPG-PVAVARQTMLAPSPS 175
G Q P + P + PPP+PG P A + +PS
Sbjct: 183 GSGQWKPKVESGDPSL---HPPPSPGTPSATPASPPASATPS 221
Score = 30.0 bits (66), Expect = 1.5
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 143 PHAAQPEVGLQE---PPPAPGPVAVARQTMLAPSPSLSFRPPGGSST 186
P AA G E PPP P P A R APSP + P GG ++
Sbjct: 81 PPAAPRRRGSPERARPPPPPPPPAPPRPPPAAPSPPAAPGPRGGGAS 127
>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
sapiens]
Length = 650
Score = 40.4 bits (93), Expect = 0.001
Identities = 50/162 (30%), Positives = 61/162 (37%), Gaps = 29/162 (17%)
Query: 22 PPTEPGCSGV-DREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGR 80
PP P G +R P P P P R PPA P+PPA G RGGG+ R
Sbjct: 81 PPAAPRRRGSPERARPPPPPPPPAPP-------RPPPAA--PSPPAAPGPRGGGASPGAR 131
Query: 81 ------GRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMP 134
GS + + G G G L+ N H E R PA A P
Sbjct: 132 RSDFLQKTGSNSFTVHPRGLHRGAGARLLS-NGH------SAPEPRAGPANRL--AGSPP 182
Query: 135 GIVQEGPGPHAAQPEVGLQEPPPAPG-PVAVARQTMLAPSPS 175
G Q P + P + PPP+PG P A + +PS
Sbjct: 183 GSGQWKPKVESGDPSL---HPPPSPGTPSATPASPPASATPS 221
Score = 30.0 bits (66), Expect = 1.5
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 143 PHAAQPEVGLQE---PPPAPGPVAVARQTMLAPSPSLSFRPPGGSST 186
P AA G E PPP P P A R APSP + P GG ++
Sbjct: 81 PPAAPRRRGSPERARPPPPPPPPAPPRPPPAAPSPPAAPGPRGGGAS 127
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 40.0 bits (92), Expect = 0.001
Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 10 PRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRG 69
P FL P GPP EPG GV ++ V P +P +P K R +P + PP G+G
Sbjct: 806 PGFLGPR----GPPGEPGEKGVPGKEGV-PGKPGEPG--FKGERGDPGIKGDKGPPGGKG 858
Query: 70 QRGGGSWRAGRGRGSGAGLLRALGER--VGP 98
Q G +G G GE VGP
Sbjct: 859 QPGDPGIPGHKGHTGLMGPQGLPGENGPVGP 889
Score = 35.8 bits (81), Expect = 0.027
Identities = 51/186 (27%), Positives = 69/186 (37%), Gaps = 35/186 (18%)
Query: 21 GPPTEPGCSGVDREDP---------VDPVQPAKPTAYVKPMRREPPA-----RAQPAPPA 66
GPP +PG G+ E P + + T + + PPA + +P PP
Sbjct: 891 GPPGQPGFPGLRGESPSMETLRRLIQEELGKQLETRLAYLLAQMPPAYMKSSQGRPGPPG 950
Query: 67 GRGQRG--------GGSWRAGRGRGSG-AGLLRALGERVG---PGMYLVHLNDHGELGYQ 114
G+ G G R G+G G +G + GER PG V L GE+G
Sbjct: 951 PPGKDGLPGRAGPMGEPGRPGQGGLEGPSGPIGPKGERGAKGDPGAPGVGL--RGEMGPP 1008
Query: 115 GQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSP 174
G P ++ +PGI PGP G P PGP + A
Sbjct: 1009 GIPGQPGEPGYAKDG---LPGI----PGPQGETGPAGHPGLPGPPGPPGQCDPSQCAYFA 1061
Query: 175 SLSFRP 180
SL+ RP
Sbjct: 1062 SLAARP 1067
Score = 30.4 bits (67), Expect = 1.1
Identities = 39/148 (26%), Positives = 50/148 (33%), Gaps = 15/148 (10%)
Query: 23 PTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGRGR 82
P PG G E DP P +P +P P + PP +GQ G G
Sbjct: 343 PRMPGEQGPKGEKG-DPGLPGEPGLQGRPGELGP--QGPTGPPGAKGQEGAHGAPGAAGN 399
Query: 83 GSGAGLLRALGERVGPGMYLV--------HLNDHGELGYQGQLEARQTPAFSFTEAALMP 134
G + A G PG + GE G G+ E P + P
Sbjct: 400 PGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAGE-EGSPGPVGPRGDPG-AP 457
Query: 135 GIVQEGPGPHAAQPEVGLQEPPPAPGPV 162
G+ GP E GL+ P PGP+
Sbjct: 458 GL--PGPPGKGKDGEPGLRGSPGLPGPL 483
>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 40.0 bits (92), Expect = 0.001
Identities = 47/176 (26%), Positives = 66/176 (37%), Gaps = 31/176 (17%)
Query: 4 PRHSKRPRFLAPNQASGGPPTEPG---CSGVDREDPVDPVQPAKPTAYVKPMRREPPARA 60
PR +++ P +A+ GPP P GV+ + QP +P RR PPA
Sbjct: 72 PRENRKRA--VPARAARGPPKRPAGGQTGGVEAASGEERSQPRRP-------RRPPPAPR 122
Query: 61 QPAPPAGR------------GQRGGGSWRAGRGRGSG--AGLLRALGERVGPGMYLVHLN 106
+P P GR ++GG S R G GSG G +G L
Sbjct: 123 RPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTTFP 182
Query: 107 DHGELGYQGQLE----ARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPA 158
G+ G+ E R+ P+ + + P AA P G + PPPA
Sbjct: 183 GSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAA-PRAGPEAPPPA 237
>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 40.0 bits (92), Expect = 0.001
Identities = 47/176 (26%), Positives = 66/176 (37%), Gaps = 31/176 (17%)
Query: 4 PRHSKRPRFLAPNQASGGPPTEPG---CSGVDREDPVDPVQPAKPTAYVKPMRREPPARA 60
PR +++ P +A+ GPP P GV+ + QP +P RR PPA
Sbjct: 72 PRENRKRA--VPARAARGPPKRPAGGQTGGVEAASGEERSQPRRP-------RRPPPAPR 122
Query: 61 QPAPPAGR------------GQRGGGSWRAGRGRGSG--AGLLRALGERVGPGMYLVHLN 106
+P P GR ++GG S R G GSG G +G L
Sbjct: 123 RPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTTFP 182
Query: 107 DHGELGYQGQLE----ARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPA 158
G+ G+ E R+ P+ + + P AA P G + PPPA
Sbjct: 183 GSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAA-PRAGPEAPPPA 237
>gi|77681565 NG5 protein [Homo sapiens]
Length = 306
Score = 40.0 bits (92), Expect = 0.001
Identities = 46/157 (29%), Positives = 63/157 (40%), Gaps = 15/157 (9%)
Query: 10 PRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRG 69
P P A+G PP PGC+ + R P DP + T + P+ PPA A P PPA
Sbjct: 85 PHHAPPGPAAGAPP--PGCATLPRMPP-DPY--LQETRFEGPLPPPPPAAAAPPPPAPAQ 139
Query: 70 QRGGGSWRAGRGRGSGAGLLRALGERVGPG--MYLVHLNDHGELGYQGQLEARQTPAFSF 127
+ G+ L LG V PG + L + + G A TP +
Sbjct: 140 TAQAPGFVVPTHAGTVGTL--PLGGYVAPGYPLQLQPCTAYVPVYPVGTPYAGGTPGGTG 197
Query: 128 TEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAV 164
+ L P +GPG +P + PP P+AV
Sbjct: 198 VTSTLPP--PPQGPGLALLEP----RRPPHDYMPIAV 228
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 40.0 bits (92), Expect = 0.001
Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 10 PRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRG 69
P FL P GPP EPG GV ++ V P +P +P K R +P + PP G+G
Sbjct: 1359 PGFLGPR----GPPGEPGEKGVPGKEGV-PGKPGEPG--FKGERGDPGIKGDKGPPGGKG 1411
Query: 70 QRGGGSWRAGRGRGSGAGLLRALGER--VGP 98
Q G +G G GE VGP
Sbjct: 1412 QPGDPGIPGHKGHTGLMGPQGLPGENGPVGP 1442
Score = 35.8 bits (81), Expect = 0.027
Identities = 51/186 (27%), Positives = 69/186 (37%), Gaps = 35/186 (18%)
Query: 21 GPPTEPGCSGVDREDP---------VDPVQPAKPTAYVKPMRREPPA-----RAQPAPPA 66
GPP +PG G+ E P + + T + + PPA + +P PP
Sbjct: 1444 GPPGQPGFPGLRGESPSMETLRRLIQEELGKQLETRLAYLLAQMPPAYMKSSQGRPGPPG 1503
Query: 67 GRGQRG--------GGSWRAGRGRGSG-AGLLRALGERVG---PGMYLVHLNDHGELGYQ 114
G+ G G R G+G G +G + GER PG V L GE+G
Sbjct: 1504 PPGKDGLPGRAGPMGEPGRPGQGGLEGPSGPIGPKGERGAKGDPGAPGVGL--RGEMGPP 1561
Query: 115 GQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSP 174
G P ++ +PGI PGP G P PGP + A
Sbjct: 1562 GIPGQPGEPGYAKDG---LPGI----PGPQGETGPAGHPGLPGPPGPPGQCDPSQCAYFA 1614
Query: 175 SLSFRP 180
SL+ RP
Sbjct: 1615 SLAARP 1620
Score = 30.4 bits (67), Expect = 1.1
Identities = 39/148 (26%), Positives = 50/148 (33%), Gaps = 15/148 (10%)
Query: 23 PTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGRGR 82
P PG G E DP P +P +P P + PP +GQ G G
Sbjct: 861 PRMPGEQGPKGEKG-DPGLPGEPGLQGRPGELGP--QGPTGPPGAKGQEGAHGAPGAAGN 917
Query: 83 GSGAGLLRALGERVGPGMYLV--------HLNDHGELGYQGQLEARQTPAFSFTEAALMP 134
G + A G PG + GE G G+ E P + P
Sbjct: 918 PGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAGE-EGSPGPVGPRGDPG-AP 975
Query: 135 GIVQEGPGPHAAQPEVGLQEPPPAPGPV 162
G+ GP E GL+ P PGP+
Sbjct: 976 GL--PGPPGKGKDGEPGLRGSPGLPGPL 1001
Score = 27.3 bits (59), Expect = 9.6
Identities = 32/113 (28%), Positives = 38/113 (33%), Gaps = 10/113 (8%)
Query: 50 KPMRREPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHG 109
K MR EP +P P G RG G G GER G G
Sbjct: 547 KGMRGEPGELGEPGLPGEVGMRGPQGPPGLPGPPGRVGAPGLQGERGEKGT-------RG 599
Query: 110 ELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPV 162
E G +G P + + P V GP + +VG PP PG V
Sbjct: 600 EKGERGLDGFPGKPGDTGQQGRPGPSGVA---GPQGEKGDVGPAGPPGVPGSV 649
>gi|4559408 colony stimulating factor 2 receptor, beta precursor
[Homo sapiens]
Length = 897
Score = 39.7 bits (91), Expect = 0.002
Identities = 55/216 (25%), Positives = 77/216 (35%), Gaps = 49/216 (22%)
Query: 1 MEEPRHSKRPRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTA------------- 47
+E+P+H P GP T P S + E P P QP P A
Sbjct: 539 IEDPKHVCDP--------PSGPDTTPAASDLPTEQPPSP-QPGPPAASHTPEKQASSFDF 589
Query: 48 ---YVKP--MRREPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYL 102
Y+ P R P QP PP Q GG + G L L G + L
Sbjct: 590 NGPYLGPPHSRSLPDILGQPEPP----QEGGSQ------KSPPPGSLEYLCLPAGGQVQL 639
Query: 103 VHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPV 162
V L G ++E R + + + + G GP P A P VG Q+ +P +
Sbjct: 640 VPLAQAMGPGQAVEVERRPSQGAAGSPSLESGG----GPAPPALGPRVGGQDQKDSPVAI 695
Query: 163 AVARQTMLAP--------SPSLSFRPPGGSSTLRIV 190
++ P S L F P G+S++ +V
Sbjct: 696 PMSSGDTEDPGVASGYVSSADLVFTPNSGASSVSLV 731
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.134 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,420,434
Number of Sequences: 37866
Number of extensions: 860848
Number of successful extensions: 8473
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 700
Number of HSP's that attempted gapping in prelim test: 6075
Number of HSP's gapped (non-prelim): 2749
length of query: 210
length of database: 18,247,518
effective HSP length: 98
effective length of query: 112
effective length of database: 14,536,650
effective search space: 1628104800
effective search space used: 1628104800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.