BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|169165603 PREDICTED: similar to proline rich 20 [Homo sapiens] (210 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|169165603 PREDICTED: similar to proline rich 20 [Homo sapiens] 436 e-123 gi|169166067 PREDICTED: similar to proline rich 20 [Homo sapiens] 436 e-123 gi|239752488 PREDICTED: FLJ40296 protein family member [Homo sap... 219 1e-57 gi|38348198 proline rich 20 [Homo sapiens] 219 1e-57 gi|194353955 hypothetical protein LOC729250 [Homo sapiens] 219 1e-57 gi|194353953 hypothetical protein LOC729246 [Homo sapiens] 219 1e-57 gi|194353951 hypothetical protein LOC729240 [Homo sapiens] 219 1e-57 gi|194353949 hypothetical protein LOC729233 [Homo sapiens] 219 1e-57 gi|110832843 TBP-associated factor 4 [Homo sapiens] 48 5e-06 gi|224465238 hypothetical protein LOC283999 [Homo sapiens] 42 5e-04 gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 42 5e-04 gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 42 5e-04 gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 42 5e-04 gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 42 5e-04 gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 41 6e-04 gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 41 8e-04 gi|153252068 testes-specific heterogenous nuclear ribonucleoprot... 41 8e-04 gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 40 0.001 gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 40 0.001 gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 40 0.001 gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 40 0.001 gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 40 0.001 gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi... 40 0.001 gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi... 40 0.001 gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 40 0.001 gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] 40 0.001 gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] 40 0.001 gi|77681565 NG5 protein [Homo sapiens] 40 0.001 gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 40 0.001 gi|4559408 colony stimulating factor 2 receptor, beta precursor ... 40 0.002 >gi|169165603 PREDICTED: similar to proline rich 20 [Homo sapiens] Length = 210 Score = 436 bits (1121), Expect = e-123 Identities = 210/210 (100%), Positives = 210/210 (100%) Query: 1 MEEPRHSKRPRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARA 60 MEEPRHSKRPRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARA Sbjct: 1 MEEPRHSKRPRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARA 60 Query: 61 QPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEAR 120 QPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEAR Sbjct: 61 QPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEAR 120 Query: 121 QTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSPSLSFRP 180 QTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSPSLSFRP Sbjct: 121 QTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSPSLSFRP 180 Query: 181 PGGSSTLRIVQTSNSTIVQSVPVFPAHSAH 210 PGGSSTLRIVQTSNSTIVQSVPVFPAHSAH Sbjct: 181 PGGSSTLRIVQTSNSTIVQSVPVFPAHSAH 210 >gi|169166067 PREDICTED: similar to proline rich 20 [Homo sapiens] Length = 210 Score = 436 bits (1121), Expect = e-123 Identities = 210/210 (100%), Positives = 210/210 (100%) Query: 1 MEEPRHSKRPRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARA 60 MEEPRHSKRPRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARA Sbjct: 1 MEEPRHSKRPRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARA 60 Query: 61 QPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEAR 120 QPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEAR Sbjct: 61 QPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEAR 120 Query: 121 QTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSPSLSFRP 180 QTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSPSLSFRP Sbjct: 121 QTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSPSLSFRP 180 Query: 181 PGGSSTLRIVQTSNSTIVQSVPVFPAHSAH 210 PGGSSTLRIVQTSNSTIVQSVPVFPAHSAH Sbjct: 181 PGGSSTLRIVQTSNSTIVQSVPVFPAHSAH 210 >gi|239752488 PREDICTED: FLJ40296 protein family member [Homo sapiens] Length = 221 Score = 219 bits (559), Expect = 1e-57 Identities = 117/216 (54%), Positives = 139/216 (64%), Gaps = 13/216 (6%) Query: 1 MEEPRHSKRPRFLAPNQASGGPPTEPGC------SGVDREDPVDPVQPAKPTAYVKPMRR 54 MEEPR SKR R +APNQASGGPP EPGC V+ + P P QPAKP AYVKP RR Sbjct: 1 MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60 Query: 55 EPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVG------PGMYLVHLNDH 108 +PPAR + PPA RG+R GGS R GRGRG AG G+R G P ++ + L+ H Sbjct: 61 QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVH-IQLDHH 119 Query: 109 GELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQT 168 GE G+QG+ E +T AFS +E PG VQEGPGP AQPE+G QEPP APGP AV Q Sbjct: 120 GEPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQP 179 Query: 169 MLAPSPSLSFRPPGGSSTLRIVQTSNSTIVQSVPVF 204 +L P + FR G S+ L+++QT T VQ VPVF Sbjct: 180 VLTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVF 215 >gi|38348198 proline rich 20 [Homo sapiens] Length = 221 Score = 219 bits (559), Expect = 1e-57 Identities = 117/216 (54%), Positives = 139/216 (64%), Gaps = 13/216 (6%) Query: 1 MEEPRHSKRPRFLAPNQASGGPPTEPGC------SGVDREDPVDPVQPAKPTAYVKPMRR 54 MEEPR SKR R +APNQASGGPP EPGC V+ + P P QPAKP AYVKP RR Sbjct: 1 MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60 Query: 55 EPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVG------PGMYLVHLNDH 108 +PPAR + PPA RG+R GGS R GRGRG AG G+R G P ++ + L+ H Sbjct: 61 QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVH-IQLDHH 119 Query: 109 GELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQT 168 GE G+QG+ E +T AFS +E PG VQEGPGP AQPE+G QEPP APGP AV Q Sbjct: 120 GEPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQP 179 Query: 169 MLAPSPSLSFRPPGGSSTLRIVQTSNSTIVQSVPVF 204 +L P + FR G S+ L+++QT T VQ VPVF Sbjct: 180 VLTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVF 215 >gi|194353955 hypothetical protein LOC729250 [Homo sapiens] Length = 221 Score = 219 bits (559), Expect = 1e-57 Identities = 117/216 (54%), Positives = 139/216 (64%), Gaps = 13/216 (6%) Query: 1 MEEPRHSKRPRFLAPNQASGGPPTEPGC------SGVDREDPVDPVQPAKPTAYVKPMRR 54 MEEPR SKR R +APNQASGGPP EPGC V+ + P P QPAKP AYVKP RR Sbjct: 1 MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60 Query: 55 EPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVG------PGMYLVHLNDH 108 +PPAR + PPA RG+R GGS R GRGRG AG G+R G P ++ + L+ H Sbjct: 61 QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVH-IQLDHH 119 Query: 109 GELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQT 168 GE G+QG+ E +T AFS +E PG VQEGPGP AQPE+G QEPP APGP AV Q Sbjct: 120 GEPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQP 179 Query: 169 MLAPSPSLSFRPPGGSSTLRIVQTSNSTIVQSVPVF 204 +L P + FR G S+ L+++QT T VQ VPVF Sbjct: 180 VLTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVF 215 >gi|194353953 hypothetical protein LOC729246 [Homo sapiens] Length = 221 Score = 219 bits (559), Expect = 1e-57 Identities = 117/216 (54%), Positives = 139/216 (64%), Gaps = 13/216 (6%) Query: 1 MEEPRHSKRPRFLAPNQASGGPPTEPGC------SGVDREDPVDPVQPAKPTAYVKPMRR 54 MEEPR SKR R +APNQASGGPP EPGC V+ + P P QPAKP AYVKP RR Sbjct: 1 MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60 Query: 55 EPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVG------PGMYLVHLNDH 108 +PPAR + PPA RG+R GGS R GRGRG AG G+R G P ++ + L+ H Sbjct: 61 QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVH-IQLDHH 119 Query: 109 GELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQT 168 GE G+QG+ E +T AFS +E PG VQEGPGP AQPE+G QEPP APGP AV Q Sbjct: 120 GEPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQP 179 Query: 169 MLAPSPSLSFRPPGGSSTLRIVQTSNSTIVQSVPVF 204 +L P + FR G S+ L+++QT T VQ VPVF Sbjct: 180 VLTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVF 215 >gi|194353951 hypothetical protein LOC729240 [Homo sapiens] Length = 221 Score = 219 bits (559), Expect = 1e-57 Identities = 117/216 (54%), Positives = 139/216 (64%), Gaps = 13/216 (6%) Query: 1 MEEPRHSKRPRFLAPNQASGGPPTEPGC------SGVDREDPVDPVQPAKPTAYVKPMRR 54 MEEPR SKR R +APNQASGGPP EPGC V+ + P P QPAKP AYVKP RR Sbjct: 1 MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60 Query: 55 EPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVG------PGMYLVHLNDH 108 +PPAR + PPA RG+R GGS R GRGRG AG G+R G P ++ + L+ H Sbjct: 61 QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVH-IQLDHH 119 Query: 109 GELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQT 168 GE G+QG+ E +T AFS +E PG VQEGPGP AQPE+G QEPP APGP AV Q Sbjct: 120 GEPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQP 179 Query: 169 MLAPSPSLSFRPPGGSSTLRIVQTSNSTIVQSVPVF 204 +L P + FR G S+ L+++QT T VQ VPVF Sbjct: 180 VLTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVF 215 >gi|194353949 hypothetical protein LOC729233 [Homo sapiens] Length = 221 Score = 219 bits (559), Expect = 1e-57 Identities = 117/216 (54%), Positives = 139/216 (64%), Gaps = 13/216 (6%) Query: 1 MEEPRHSKRPRFLAPNQASGGPPTEPGC------SGVDREDPVDPVQPAKPTAYVKPMRR 54 MEEPR SKR R +APNQASGGPP EPGC V+ + P P QPAKP AYVKP RR Sbjct: 1 MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60 Query: 55 EPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVG------PGMYLVHLNDH 108 +PPAR + PPA RG+R GGS R GRGRG AG G+R G P ++ + L+ H Sbjct: 61 QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVH-IQLDHH 119 Query: 109 GELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQT 168 GE G+QG+ E +T AFS +E PG VQEGPGP AQPE+G QEPP APGP AV Q Sbjct: 120 GEPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQP 179 Query: 169 MLAPSPSLSFRPPGGSSTLRIVQTSNSTIVQSVPVF 204 +L P + FR G S+ L+++QT T VQ VPVF Sbjct: 180 VLTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVF 215 >gi|110832843 TBP-associated factor 4 [Homo sapiens] Length = 1085 Score = 48.1 bits (113), Expect = 5e-06 Identities = 56/194 (28%), Positives = 65/194 (33%), Gaps = 38/194 (19%) Query: 20 GGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRR---------------------EPPA 58 GG P PG R P+ P PA P A ++P P Sbjct: 99 GGGPQRPGPPSPRR--PLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAG 156 Query: 59 RAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLE 118 A+PA PA R G G G G G G G+ GPG LN L Sbjct: 157 PAKPAGPAALAARAGPGPGPGPGPGPGPGP----GKPAGPGAAQT-LNGSAALLNSHHAA 211 Query: 119 ARQTPAFSFTEAALMPGIVQEGPGP---------HAAQPEVGLQEPPPAPGPVA-VARQT 168 A + AAL+P PG AA P PP AP P A A Sbjct: 212 APAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPP 271 Query: 169 MLAPSPSLSFRPPG 182 P+P+ RPPG Sbjct: 272 PPPPAPATLARPPG 285 Score = 42.0 bits (97), Expect = 4e-04 Identities = 52/187 (27%), Positives = 68/187 (36%), Gaps = 17/187 (9%) Query: 15 PNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGG 74 P A+ PP P + P P PA T P P A PA P + GG Sbjct: 250 PAPAAPSPPAAPAPAAPAAAPPPPP--PAPATLARPPGHPAGPPTAAPAVPPPAAAQNGG 307 Query: 75 SWRAGRGRGSGAGLLRALGERVGPGMYLVH-----LNDHGELGYQGQLEARQTPAFS--- 126 S A AG + + GPG + + Q A QT A S Sbjct: 308 SAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPA 367 Query: 127 FTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPG-PVAVARQTMLAPSPSLSFRPPGGSS 185 T A+++ G +G P A PPPAPG P + + A + SLS P +S Sbjct: 368 STAASMVIGPTMQGALPSPA------AVPPPAPGTPTGLPKGAAGAVTQSLSRTPTATTS 421 Query: 186 TLRIVQT 192 +R T Sbjct: 422 GIRATLT 428 Score = 31.2 bits (69), Expect = 0.67 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 7/85 (8%) Query: 119 ARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSPSLSF 178 A Q P S T+ + G+ ++G QP + + PP PG + Q L +P ++ Sbjct: 716 ALQPPVLSLTQPTQV-GVGKQG------QPTPLVIQQPPKPGALIRPPQVTLTQTPMVAL 768 Query: 179 RPPGGSSTLRIVQTSNSTIVQSVPV 203 R P L Q +Q VPV Sbjct: 769 RQPHNRIMLTTPQQIQLNPLQPVPV 793 >gi|224465238 hypothetical protein LOC283999 [Homo sapiens] Length = 394 Score = 41.6 bits (96), Expect = 5e-04 Identities = 47/138 (34%), Positives = 53/138 (38%), Gaps = 8/138 (5%) Query: 51 PMRREPPARAQPAPPAGRGQRGGGSWRAGRGRGSG-AGLLRALGERVGPGMYLVHLNDHG 109 P R PA P+PPAGR G + RA GR G LRA G R G LVH G Sbjct: 165 PRRPRGPATPDPSPPAGRPH--GPAGRAAPGRRPGCTAQLRAPGRR-GRQRLLVHPGGGG 221 Query: 110 ELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQ-PEVGLQEPPPAPGPVAVA--- 165 +Q AR+ + A + G G H Q GL A P A A Sbjct: 222 RRQWQRLARARRAALLALGALAHLRRCPDTGGGQHLHQLLAPGLCGDGAAVWPAAHAGRP 281 Query: 166 RQTMLAPSPSLSFRPPGG 183 RQ L P L GG Sbjct: 282 RQLRLVHGPGLGLLCLGG 299 >gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo sapiens] Length = 1424 Score = 41.6 bits (96), Expect = 5e-04 Identities = 46/162 (28%), Positives = 57/162 (35%), Gaps = 21/162 (12%) Query: 10 PRFLAPNQASG-GPPTEPGCSGVDREDPVDPVQPAKPTAYVK--------PMRREPPARA 60 P + P Q GPP G G P P P +K P + PP A Sbjct: 1230 PGAIIPGQTGNRGPPGSRGSPGA----PGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTA 1285 Query: 61 QPAPPAGR-GQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEA 119 P GR G G RG G GE+ PG +L + G +G +G Sbjct: 1286 GDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPG-FLGSIGPPGPIGPKGPPGV 1344 Query: 120 RQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGP 161 R P + +PG PGP E G+Q P PGP Sbjct: 1345 RGDPGT--LKIISLPG----SPGPPGTPGEPGMQGEPGPPGP 1380 Score = 28.9 bits (63), Expect = 3.3 Identities = 40/156 (25%), Positives = 54/156 (34%), Gaps = 30/156 (19%) Query: 21 GPPTEPGCSGV--DREDPVDPVQPAKPTAYVKPMRREPPA-RAQPAPPAGRGQRGGGSWR 77 G P PG G+ D+ +P Y + R PP P P G++G Sbjct: 1039 GRPGLPGIHGLQGDKGEP----------GYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQP 1088 Query: 78 AGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIV 137 G AG A G PG+ HG+LG++G P +PG Sbjct: 1089 GPPGHLGPAGPEGAPGSPGSPGLP-GKPGPHGDLGFKGIKGLLGPPGIRGPPG--LPGFP 1145 Query: 138 -------------QEG-PGPHAAQPEVGLQEPPPAP 159 ++G PGP + E GL PP P Sbjct: 1146 GSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGP 1181 Score = 28.1 bits (61), Expect = 5.6 Identities = 40/140 (28%), Positives = 47/140 (33%), Gaps = 43/140 (30%) Query: 21 GPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGR 80 GP E SG ++ D P P P + P A PA P G G +G Sbjct: 581 GPKGELALSG-EKGDQGPPGDPGSPGS---------PGPAGPAGPPGYGPQGE------- 623 Query: 81 GRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIVQEG 140 GL G PG GE G +G+L TP +PG Sbjct: 624 -----PGLQGTQGVPGAPG-------PPGEAGPRGELSV-STP---------VPG----P 657 Query: 141 PGPHAAQPEVGLQEPPPAPG 160 PGP G Q PP PG Sbjct: 658 PGPPGPPGHPGPQGPPGIPG 677 Score = 27.3 bits (59), Expect = 9.6 Identities = 29/92 (31%), Positives = 34/92 (36%), Gaps = 19/92 (20%) Query: 26 PGCSGVD----REDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGG-------- 73 PG G D ++ + P PT Y + E P PP RG RG Sbjct: 320 PGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQ-EKGDEGTPGPPGPRGARGPQGPSGPPG 378 Query: 74 -----GSWRAG-RGRGSGAGLLRALGERVGPG 99 GS R G RG GL + GER PG Sbjct: 379 VPGSPGSSRPGLRGAPGWPGLKGSKGERGRPG 410 >gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo sapiens] Length = 1494 Score = 41.6 bits (96), Expect = 5e-04 Identities = 46/162 (28%), Positives = 57/162 (35%), Gaps = 21/162 (12%) Query: 10 PRFLAPNQASG-GPPTEPGCSGVDREDPVDPVQPAKPTAYVK--------PMRREPPARA 60 P + P Q GPP G G P P P +K P + PP A Sbjct: 1230 PGAIIPGQTGNRGPPGSRGSPGA----PGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTA 1285 Query: 61 QPAPPAGR-GQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEA 119 P GR G G RG G GE+ PG +L + G +G +G Sbjct: 1286 GDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPG-FLGSIGPPGPIGPKGPPGV 1344 Query: 120 RQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGP 161 R P + +PG PGP E G+Q P PGP Sbjct: 1345 RGDPGT--LKIISLPG----SPGPPGTPGEPGMQGEPGPPGP 1380 Score = 28.9 bits (63), Expect = 3.3 Identities = 40/156 (25%), Positives = 54/156 (34%), Gaps = 30/156 (19%) Query: 21 GPPTEPGCSGV--DREDPVDPVQPAKPTAYVKPMRREPPA-RAQPAPPAGRGQRGGGSWR 77 G P PG G+ D+ +P Y + R PP P P G++G Sbjct: 1039 GRPGLPGIHGLQGDKGEP----------GYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQP 1088 Query: 78 AGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIV 137 G AG A G PG+ HG+LG++G P +PG Sbjct: 1089 GPPGHLGPAGPEGAPGSPGSPGLP-GKPGPHGDLGFKGIKGLLGPPGIRGPPG--LPGFP 1145 Query: 138 -------------QEG-PGPHAAQPEVGLQEPPPAP 159 ++G PGP + E GL PP P Sbjct: 1146 GSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGP 1181 Score = 28.1 bits (61), Expect = 5.6 Identities = 40/140 (28%), Positives = 47/140 (33%), Gaps = 43/140 (30%) Query: 21 GPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGR 80 GP E SG ++ D P P P + P A PA P G G +G Sbjct: 581 GPKGELALSG-EKGDQGPPGDPGSPGS---------PGPAGPAGPPGYGPQGE------- 623 Query: 81 GRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIVQEG 140 GL G PG GE G +G+L TP +PG Sbjct: 624 -----PGLQGTQGVPGAPG-------PPGEAGPRGELSV-STP---------VPG----P 657 Query: 141 PGPHAAQPEVGLQEPPPAPG 160 PGP G Q PP PG Sbjct: 658 PGPPGPPGHPGPQGPPGIPG 677 Score = 27.3 bits (59), Expect = 9.6 Identities = 29/92 (31%), Positives = 34/92 (36%), Gaps = 19/92 (20%) Query: 26 PGCSGVD----REDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGG-------- 73 PG G D ++ + P PT Y + E P PP RG RG Sbjct: 320 PGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQ-EKGDEGTPGPPGPRGARGPQGPSGPPG 378 Query: 74 -----GSWRAG-RGRGSGAGLLRALGERVGPG 99 GS R G RG GL + GER PG Sbjct: 379 VPGSPGSSRPGLRGAPGWPGLKGSKGERGRPG 410 >gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo sapiens] Length = 1637 Score = 41.6 bits (96), Expect = 5e-04 Identities = 46/162 (28%), Positives = 57/162 (35%), Gaps = 21/162 (12%) Query: 10 PRFLAPNQASG-GPPTEPGCSGVDREDPVDPVQPAKPTAYVK--------PMRREPPARA 60 P + P Q GPP G G P P P +K P + PP A Sbjct: 1230 PGAIIPGQTGNRGPPGSRGSPGA----PGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTA 1285 Query: 61 QPAPPAGR-GQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEA 119 P GR G G RG G GE+ PG +L + G +G +G Sbjct: 1286 GDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPG-FLGSIGPPGPIGPKGPPGV 1344 Query: 120 RQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGP 161 R P + +PG PGP E G+Q P PGP Sbjct: 1345 RGDPGT--LKIISLPG----SPGPPGTPGEPGMQGEPGPPGP 1380 Score = 28.9 bits (63), Expect = 3.3 Identities = 40/156 (25%), Positives = 54/156 (34%), Gaps = 30/156 (19%) Query: 21 GPPTEPGCSGV--DREDPVDPVQPAKPTAYVKPMRREPPA-RAQPAPPAGRGQRGGGSWR 77 G P PG G+ D+ +P Y + R PP P P G++G Sbjct: 1039 GRPGLPGIHGLQGDKGEP----------GYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQP 1088 Query: 78 AGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIV 137 G AG A G PG+ HG+LG++G P +PG Sbjct: 1089 GPPGHLGPAGPEGAPGSPGSPGLP-GKPGPHGDLGFKGIKGLLGPPGIRGPPG--LPGFP 1145 Query: 138 -------------QEG-PGPHAAQPEVGLQEPPPAP 159 ++G PGP + E GL PP P Sbjct: 1146 GSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGP 1181 Score = 28.1 bits (61), Expect = 5.6 Identities = 40/140 (28%), Positives = 47/140 (33%), Gaps = 43/140 (30%) Query: 21 GPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGR 80 GP E SG ++ D P P P + P A PA P G G +G Sbjct: 581 GPKGELALSG-EKGDQGPPGDPGSPGS---------PGPAGPAGPPGYGPQGE------- 623 Query: 81 GRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIVQEG 140 GL G PG GE G +G+L TP +PG Sbjct: 624 -----PGLQGTQGVPGAPG-------PPGEAGPRGELSV-STP---------VPG----P 657 Query: 141 PGPHAAQPEVGLQEPPPAPG 160 PGP G Q PP PG Sbjct: 658 PGPPGPPGHPGPQGPPGIPG 677 Score = 27.3 bits (59), Expect = 9.6 Identities = 29/92 (31%), Positives = 34/92 (36%), Gaps = 19/92 (20%) Query: 26 PGCSGVD----REDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGG-------- 73 PG G D ++ + P PT Y + E P PP RG RG Sbjct: 320 PGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQ-EKGDEGTPGPPGPRGARGPQGPSGPPG 378 Query: 74 -----GSWRAG-RGRGSGAGLLRALGERVGPG 99 GS R G RG GL + GER PG Sbjct: 379 VPGSPGSSRPGLRGAPGWPGLKGSKGERGRPG 410 >gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo sapiens] Length = 1670 Score = 41.6 bits (96), Expect = 5e-04 Identities = 46/162 (28%), Positives = 57/162 (35%), Gaps = 21/162 (12%) Query: 10 PRFLAPNQASG-GPPTEPGCSGVDREDPVDPVQPAKPTAYVK--------PMRREPPARA 60 P + P Q GPP G G P P P +K P + PP A Sbjct: 1230 PGAIIPGQTGNRGPPGSRGSPGA----PGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTA 1285 Query: 61 QPAPPAGR-GQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEA 119 P GR G G RG G GE+ PG +L + G +G +G Sbjct: 1286 GDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPG-FLGSIGPPGPIGPKGPPGV 1344 Query: 120 RQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGP 161 R P + +PG PGP E G+Q P PGP Sbjct: 1345 RGDPGT--LKIISLPG----SPGPPGTPGEPGMQGEPGPPGP 1380 Score = 28.9 bits (63), Expect = 3.3 Identities = 40/156 (25%), Positives = 54/156 (34%), Gaps = 30/156 (19%) Query: 21 GPPTEPGCSGV--DREDPVDPVQPAKPTAYVKPMRREPPA-RAQPAPPAGRGQRGGGSWR 77 G P PG G+ D+ +P Y + R PP P P G++G Sbjct: 1039 GRPGLPGIHGLQGDKGEP----------GYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQP 1088 Query: 78 AGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIV 137 G AG A G PG+ HG+LG++G P +PG Sbjct: 1089 GPPGHLGPAGPEGAPGSPGSPGLP-GKPGPHGDLGFKGIKGLLGPPGIRGPPG--LPGFP 1145 Query: 138 -------------QEG-PGPHAAQPEVGLQEPPPAP 159 ++G PGP + E GL PP P Sbjct: 1146 GSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGP 1181 Score = 28.1 bits (61), Expect = 5.6 Identities = 40/140 (28%), Positives = 47/140 (33%), Gaps = 43/140 (30%) Query: 21 GPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGR 80 GP E SG ++ D P P P + P A PA P G G +G Sbjct: 581 GPKGELALSG-EKGDQGPPGDPGSPGS---------PGPAGPAGPPGYGPQGE------- 623 Query: 81 GRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIVQEG 140 GL G PG GE G +G+L TP +PG Sbjct: 624 -----PGLQGTQGVPGAPG-------PPGEAGPRGELSV-STP---------VPG----P 657 Query: 141 PGPHAAQPEVGLQEPPPAPG 160 PGP G Q PP PG Sbjct: 658 PGPPGPPGHPGPQGPPGIPG 677 Score = 27.3 bits (59), Expect = 9.6 Identities = 29/92 (31%), Positives = 34/92 (36%), Gaps = 19/92 (20%) Query: 26 PGCSGVD----REDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGG-------- 73 PG G D ++ + P PT Y + E P PP RG RG Sbjct: 320 PGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQ-EKGDEGTPGPPGPRGARGPQGPSGPPG 378 Query: 74 -----GSWRAG-RGRGSGAGLLRALGERVGPG 99 GS R G RG GL + GER PG Sbjct: 379 VPGSPGSSRPGLRGAPGWPGLKGSKGERGRPG 410 >gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] Length = 1489 Score = 41.2 bits (95), Expect = 6e-04 Identities = 44/142 (30%), Positives = 55/142 (38%), Gaps = 12/142 (8%) Query: 14 APNQASGGPPTEPGCSGVDREDP-VDPVQPAKPTAYVKPMRREPPARAQPAPPAGR---- 68 AP P PG SGVD + VD +P P + P P R +PAPP R Sbjct: 1144 APVGTGTAPGGGPG-SGVDAKAGWVDNTRPQPPPPPLPPPPEAQPRRLEPAPPRARPEVA 1202 Query: 69 --GQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFS 126 G+ G RAG ER GP M + L+ G Q++AR S Sbjct: 1203 PEGEPGAPDSRAGGDTALSGDGDPPKPERKGPEMPRLFLDLGPPQGNSEQIKAR----LS 1258 Query: 127 FTEAALMPGIVQEGPGPHAAQP 148 AL P + PGP +P Sbjct: 1259 RLSLALPPLTLTPFPGPGPRRP 1280 Score = 31.6 bits (70), Expect = 0.51 Identities = 33/126 (26%), Positives = 44/126 (34%), Gaps = 16/126 (12%) Query: 37 VDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERV 96 +DP+ A Y P R PPA P PP S S L + G + Sbjct: 762 LDPLMGAAAPQY--PGRGPPPAPPPPPPPPRAPADPAASPDPPSAVASPGSGLSSPGPKP 819 Query: 97 GPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPP 156 G + GY+ + AF AA G+ + P P+ G PP Sbjct: 820 G------------DSGYETETPFSPEGAFPGGGAAEEEGVPRPRAPPEP--PDPGAPRPP 865 Query: 157 PAPGPV 162 P PGP+ Sbjct: 866 PDPGPL 871 Score = 28.9 bits (63), Expect = 3.3 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 1/52 (1%) Query: 14 APNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPP 65 +P P +PG SG + E P P + A P P RA P PP Sbjct: 807 SPGSGLSSPGPKPGDSGYETETPFSP-EGAFPGGGAAEEEGVPRPRAPPEPP 857 Score = 27.3 bits (59), Expect = 9.6 Identities = 35/124 (28%), Positives = 47/124 (37%), Gaps = 19/124 (15%) Query: 39 PVQPAKPTAYVKP--MRREPPARAQP-APPAGRGQRGGGSWRAGRGRGSGAGLLRALGER 95 P+ PA ++P RR P P AP AGR G G RA G G+ G Sbjct: 1103 PLGPAPKNGTLEPGTERRAPETGGAPRAPGAGRLDLGSGG-RAPVGTGTAPG-------- 1153 Query: 96 VGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEP 155 GPG + + G+ + P P ++ P P A+PEV + Sbjct: 1154 GGPGSGV-----DAKAGWVDNTRPQPPPPPLPPPPEAQPRRLE--PAPPRARPEVAPEGE 1206 Query: 156 PPAP 159 P AP Sbjct: 1207 PGAP 1210 >gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] Length = 1745 Score = 40.8 bits (94), Expect = 8e-04 Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 6/85 (7%) Query: 21 GPPTEPGCSGVD-----REDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGS 75 GPP +PG SG+D + DP D P P A +P PP + P+ GR R G Sbjct: 1268 GPPGDPGVSGIDGSPGEKGDPGDVGGPGPPGASGEPGAPGPPGKRGPSGHMGREGREGEK 1327 Query: 76 WRAGR-GRGSGAGLLRALGERVGPG 99 G G G +G R PG Sbjct: 1328 GAKGEPGPDGPPGRTGPMGARGPPG 1352 Score = 32.3 bits (72), Expect = 0.30 Identities = 40/158 (25%), Positives = 49/158 (31%), Gaps = 46/158 (29%) Query: 10 PRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRG 69 PR L + S GP PG +G+D P A+ PP G Sbjct: 600 PRGLLGPRGSPGPTGRPGVTGID---------------------GAPGAKGNVGPPGEPG 638 Query: 70 QRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVH--LNDHGELGYQGQLEARQTPAFSF 127 G +G GL+ GE+ PG + G LG+ G Sbjct: 639 PPGQQGNHGSQGLPGPQGLIGTPGEKGPPGNPGIPGLPGSDGPLGHPG------------ 686 Query: 128 TEAALMPGIVQEGP-GPHAAQPEVGLQEPPPAPGPVAV 164 EGP G AQ G PP PGP V Sbjct: 687 ----------HEGPTGEKGAQGPPGSAGPPGYPGPRGV 714 Score = 29.3 bits (64), Expect = 2.5 Identities = 34/117 (29%), Positives = 41/117 (35%), Gaps = 23/117 (19%) Query: 53 RREPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLV-----HLND 107 R +P A QP P GQ G +G G G + PG H Sbjct: 841 RGQPGATGQPGPKGDVGQDGAPGIPGEKGLPGLQGPPGFPGPKGPPGHQGKDGRPGHPGQ 900 Query: 108 HGELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEV---GLQEPPPAPGP 161 GELG+QGQ T G++ GP EV G + PP PGP Sbjct: 901 RGELGFQGQ-----------TGPPGPAGVL----GPQGKTGEVGPLGERGPPGPPGP 942 Score = 27.7 bits (60), Expect = 7.4 Identities = 38/156 (24%), Positives = 48/156 (30%), Gaps = 20/156 (12%) Query: 21 GPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRRE--------PPARAQPAPPAGRGQRG 72 GPP G G+ P+ P P P E P + G G Sbjct: 1046 GPPGPTGKDGIP-----GPLGPLGPPGAAGPSGEEGDKGDVGAPGHKGSKGDKGDAGPPG 1100 Query: 73 GGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQ-----LEARQTPAFSF 127 R G G A G R PG++ D G G+ G L+ P Sbjct: 1101 QPGIRGPAGHPGPPGADGAQGRRGPPGLF-GQKGDDGVRGFVGVIGPPGLQGLPGPPGEK 1159 Query: 128 TEAALMPGIVQEG-PGPHAAQPEVGLQEPPPAPGPV 162 E + + G PGP Q G + P PG V Sbjct: 1160 GEVGDVGSMGPHGAPGPRGPQGPTGSEGTPGLPGGV 1195 Score = 27.3 bits (59), Expect = 9.6 Identities = 30/104 (28%), Positives = 36/104 (34%), Gaps = 6/104 (5%) Query: 62 PAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQ 121 P PP G G +G +G G++ PG G G G L Sbjct: 1213 PGPPGAPGIPGPKGDIGEKGDSGPSGAAGPPGKKGPPGEDGAK-GSVGPTGLPGDLGPPG 1271 Query: 122 TPAFSFTEAALM----PGIVQEGPGPHAAQPEVGLQEPPPAPGP 161 P S + + PG V GPGP A E G PP GP Sbjct: 1272 DPGVSGIDGSPGEKGDPGDVG-GPGPPGASGEPGAPGPPGKRGP 1314 >gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein G-T [Homo sapiens] Length = 392 Score = 40.8 bits (94), Expect = 8e-04 Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 10/94 (10%) Query: 4 PRHSKRPRFLAPNQASGGPPTE-PGCSGVDREDPVDPVQPAKPTAYVKPMRREPPAR--- 59 PR RPRFL + GG P P G D + +P+ PM+R PP R Sbjct: 99 PRSRGRPRFLRGTRGGGGGPRRSPSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVG 158 Query: 60 --AQPAPPAGRGQRGGGSWR----AGRGRGSGAG 87 + A P+G + GG R A RGR +G Sbjct: 159 PPPKRAAPSGPARSSGGGMRGRALAVRGRDGYSG 192 Score = 28.5 bits (62), Expect = 4.3 Identities = 36/128 (28%), Positives = 45/128 (35%), Gaps = 37/128 (28%) Query: 41 QPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGM 100 Q KP A+ R PP R++ P RG RGGG G R R GP Sbjct: 83 QATKP-AFESSRRGPPPPRSRGRPRFLRGTRGGG------------GGPRRSPSRGGP-- 127 Query: 101 YLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPG 160 +D G GY + R + A P ++ GP P P PP Sbjct: 128 -----DDDG--GYTADFDLRPSRA---------PMPMKRGPPPRRVGP------PPKRAA 165 Query: 161 PVAVARQT 168 P AR + Sbjct: 166 PSGPARSS 173 >gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo sapiens] Length = 1487 Score = 40.4 bits (93), Expect = 0.001 Identities = 47/168 (27%), Positives = 57/168 (33%), Gaps = 24/168 (14%) Query: 12 FLAPNQASGGP--------PTEPGCSGVDRED----PVDPVQPAKPTAYVKPMRREPPAR 59 F P A+G P P PG G+ +D P PA P P+ Sbjct: 604 FPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSG 663 Query: 60 AQ--PAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQL 117 Q P PP G+ G + G GL+ GER PG + G G QG Sbjct: 664 FQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPG-------ERGSPGAQGLQ 716 Query: 118 EARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVA 165 R P T+ P GP AQ GLQ P G +A Sbjct: 717 GPRGLPGTPGTDG---PKGASGPAGPPGAQGPPGLQGMPGERGAAGIA 761 Score = 36.2 bits (82), Expect = 0.021 Identities = 45/152 (29%), Positives = 53/152 (34%), Gaps = 16/152 (10%) Query: 17 QASGGPPTEPGCSGV--DREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGG 74 Q + G P EPG SG R P P +P KP + R P P RG G Sbjct: 224 QGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGE--RGPPGPQGARGFPGTP 281 Query: 75 SWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMP 134 +G GL A GE PG+ GE G G + R P Sbjct: 282 GLPGVKGHRGYPGLDGAKGEAGAPGV-KGESGSPGENGSPGPMGPRGLPGER-------- 332 Query: 135 GIVQEGP-GPHAAQPEVGLQEPPPAPGPVAVA 165 + GP G A+ G P PGPV A Sbjct: 333 --GRTGPAGAAGARGNDGQPGPAGPPGPVGPA 362 Score = 31.6 bits (70), Expect = 0.51 Identities = 38/149 (25%), Positives = 47/149 (31%), Gaps = 13/149 (8%) Query: 17 QASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSW 76 Q + G P PG GV + AK A ++ E + + P G RG Sbjct: 272 QGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRG---L 328 Query: 77 RAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGI 136 RGR AG A G PG G G + P F A Sbjct: 329 PGERGRTGPAGAAGARGNDGQPG----------PAGPPGPVGPAGGPGFPGAPGAKGEAG 378 Query: 137 VQEGPGPHAAQPEVGLQEPPPAPGPVAVA 165 GP AQ G P +PGP + Sbjct: 379 PTGARGPEGAQGPRGEPGTPGSPGPAGAS 407 Score = 31.6 bits (70), Expect = 0.51 Identities = 37/157 (23%), Positives = 52/157 (33%), Gaps = 4/157 (2%) Query: 4 PRHSKRPRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPA 63 P ++ P + G P PG +G D + AK +A + P Sbjct: 379 PTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRG 438 Query: 64 PPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTP 123 PP +G G + G AG G + PG G G +G+ AR P Sbjct: 439 PPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGP-AGPQGAPGPAGEEGKRGARGEP 497 Query: 124 AFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPG 160 + P + PG + GL P APG Sbjct: 498 G---GVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPG 531 Score = 31.2 bits (69), Expect = 0.67 Identities = 44/165 (26%), Positives = 52/165 (31%), Gaps = 27/165 (16%) Query: 10 PRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRG 69 P LA GP + G G D +D V P P P + PA Q P RG Sbjct: 90 PTDLATASGQPGPKGQKGEPG-DIKDIVGPKGPPGP---------QGPAGEQ-GPRGDRG 138 Query: 70 QRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTE 129 +G RGR G G PG G G G A+ F Sbjct: 139 DKGEKGAPGPRGRDGEPGTPGNPGPPGPPG-------PPGPPGLGGNFAAQMAGGFDEKA 191 Query: 130 AALMPGIVQEG---------PGPHAAQPEVGLQEPPPAPGPVAVA 165 G++Q PGP A G Q P PG V+ Sbjct: 192 GGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVS 236 Score = 31.2 bits (69), Expect = 0.67 Identities = 41/147 (27%), Positives = 46/147 (31%), Gaps = 16/147 (10%) Query: 21 GPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQ--PAPPAGRGQRGGGSWRA 78 GPP PG +G P PM PA A+ P RG +G Sbjct: 1071 GPPGSPGPAG-----PTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPG 1125 Query: 79 GRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPA----FSFTEAALMP 134 RG G G PG D G G G R P A +P Sbjct: 1126 ERGLKGHRGFTGLQGLPGPPGPS----GDQGASGPAGPSGPRGPPGPVGPSGKDGANGIP 1181 Query: 135 GIVQEGPGPHAAQPEVGLQEPPPAPGP 161 G + PGP E G PP PGP Sbjct: 1182 GPIGP-PGPRGRSGETGPAGPPGNPGP 1207 Score = 29.3 bits (64), Expect = 2.5 Identities = 28/100 (28%), Positives = 31/100 (31%), Gaps = 4/100 (4%) Query: 21 GPPTEPGCSGVD-REDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAG 79 GP EPG G P P P P EP P G+ G + Sbjct: 999 GPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAG-EPGREGSPGADGPPGRDGAAGVKGD 1057 Query: 80 RGRGSGAGLLRALGE--RVGPGMYLVHLNDHGELGYQGQL 117 RG G A G GP D GE G QG + Sbjct: 1058 RGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPM 1097 >gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo sapiens] Length = 1418 Score = 40.4 bits (93), Expect = 0.001 Identities = 47/168 (27%), Positives = 57/168 (33%), Gaps = 24/168 (14%) Query: 12 FLAPNQASGGP--------PTEPGCSGVDRED----PVDPVQPAKPTAYVKPMRREPPAR 59 F P A+G P P PG G+ +D P PA P P+ Sbjct: 535 FPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSG 594 Query: 60 AQ--PAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQL 117 Q P PP G+ G + G GL+ GER PG + G G QG Sbjct: 595 FQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPG-------ERGSPGAQGLQ 647 Query: 118 EARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVA 165 R P T+ P GP AQ GLQ P G +A Sbjct: 648 GPRGLPGTPGTDG---PKGASGPAGPPGAQGPPGLQGMPGERGAAGIA 692 Score = 36.2 bits (82), Expect = 0.021 Identities = 45/152 (29%), Positives = 53/152 (34%), Gaps = 16/152 (10%) Query: 17 QASGGPPTEPGCSGV--DREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGG 74 Q + G P EPG SG R P P +P KP + R P P RG G Sbjct: 155 QGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGE--RGPPGPQGARGFPGTP 212 Query: 75 SWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMP 134 +G GL A GE PG+ GE G G + R P Sbjct: 213 GLPGVKGHRGYPGLDGAKGEAGAPGV-KGESGSPGENGSPGPMGPRGLPGER-------- 263 Query: 135 GIVQEGP-GPHAAQPEVGLQEPPPAPGPVAVA 165 + GP G A+ G P PGPV A Sbjct: 264 --GRTGPAGAAGARGNDGQPGPAGPPGPVGPA 293 Score = 31.6 bits (70), Expect = 0.51 Identities = 38/149 (25%), Positives = 47/149 (31%), Gaps = 13/149 (8%) Query: 17 QASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSW 76 Q + G P PG GV + AK A ++ E + + P G RG Sbjct: 203 QGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRG---L 259 Query: 77 RAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGI 136 RGR AG A G PG G G + P F A Sbjct: 260 PGERGRTGPAGAAGARGNDGQPG----------PAGPPGPVGPAGGPGFPGAPGAKGEAG 309 Query: 137 VQEGPGPHAAQPEVGLQEPPPAPGPVAVA 165 GP AQ G P +PGP + Sbjct: 310 PTGARGPEGAQGPRGEPGTPGSPGPAGAS 338 Score = 31.6 bits (70), Expect = 0.51 Identities = 37/157 (23%), Positives = 52/157 (33%), Gaps = 4/157 (2%) Query: 4 PRHSKRPRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPA 63 P ++ P + G P PG +G D + AK +A + P Sbjct: 310 PTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRG 369 Query: 64 PPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTP 123 PP +G G + G AG G + PG G G +G+ AR P Sbjct: 370 PPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGP-AGPQGAPGPAGEEGKRGARGEP 428 Query: 124 AFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPG 160 + P + PG + GL P APG Sbjct: 429 G---GVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPG 462 Score = 31.2 bits (69), Expect = 0.67 Identities = 41/147 (27%), Positives = 46/147 (31%), Gaps = 16/147 (10%) Query: 21 GPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQ--PAPPAGRGQRGGGSWRA 78 GPP PG +G P PM PA A+ P RG +G Sbjct: 1002 GPPGSPGPAG-----PTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPG 1056 Query: 79 GRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPA----FSFTEAALMP 134 RG G G PG D G G G R P A +P Sbjct: 1057 ERGLKGHRGFTGLQGLPGPPGPS----GDQGASGPAGPSGPRGPPGPVGPSGKDGANGIP 1112 Query: 135 GIVQEGPGPHAAQPEVGLQEPPPAPGP 161 G + PGP E G PP PGP Sbjct: 1113 GPIGP-PGPRGRSGETGPAGPPGNPGP 1138 Score = 29.3 bits (64), Expect = 2.5 Identities = 28/100 (28%), Positives = 31/100 (31%), Gaps = 4/100 (4%) Query: 21 GPPTEPGCSGVD-REDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAG 79 GP EPG G P P P P EP P G+ G + Sbjct: 930 GPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAG-EPGREGSPGADGPPGRDGAAGVKGD 988 Query: 80 RGRGSGAGLLRALGE--RVGPGMYLVHLNDHGELGYQGQL 117 RG G A G GP D GE G QG + Sbjct: 989 RGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPM 1028 Score = 28.9 bits (63), Expect = 3.3 Identities = 41/154 (26%), Positives = 49/154 (31%), Gaps = 27/154 (17%) Query: 21 GPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGR 80 GP + G G D +D V P P P + PA Q P RG +G R Sbjct: 32 GPKGQKGEPG-DIKDIVGPKGPPGP---------QGPAGEQ-GPRGDRGDKGEKGAPGPR 80 Query: 81 GRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIVQEG 140 GR G G PG G G G A+ F G++Q Sbjct: 81 GRDGEPGTPGNPGPPGPPG-------PPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGP 133 Query: 141 ---------PGPHAAQPEVGLQEPPPAPGPVAVA 165 PGP A G Q P PG V+ Sbjct: 134 MGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVS 167 >gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] Length = 2944 Score = 40.4 bits (93), Expect = 0.001 Identities = 48/170 (28%), Positives = 61/170 (35%), Gaps = 28/170 (16%) Query: 16 NQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGS 75 ++ S G P PG G PV P PT P +A P +G++G Sbjct: 2270 DRGSPGVPGSPGLPG-----PVGPKGEPGPTG--------APGQAVVGLPGAKGEKGAPG 2316 Query: 76 WRAGR-----GRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEA 130 AG G GL GE+ G + G+ G GQ A F Sbjct: 2317 GLAGDLVGEPGAKGDRGLPGPRGEKGEAG----RAGEPGDPGEDGQKGAPGPKGFKGDPG 2372 Query: 131 ALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQT-----MLAPSPS 175 +PG PGP + ++GL P APG V QT M P PS Sbjct: 2373 VGVPGSPGP-PGPPGVKGDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGPS 2421 Score = 29.6 bits (65), Expect = 1.9 Identities = 51/188 (27%), Positives = 66/188 (35%), Gaps = 46/188 (24%) Query: 11 RFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARA----QPAPPA 66 R L ++ GP PG + +R P +P KP P RA + P Sbjct: 2002 RGLKGDRGDPGPQGPPGLALGERGPPGPSGLAGEPG---KPGIPGLPGRAGGVGEAGRPG 2058 Query: 67 GRGQRGGGSWRAGRGRGSGAGLLRALG-----------ERVGPGMYLVHLNDHGELGYQG 115 RG+RG R +GR GL G + GPG+ GE G G Sbjct: 2059 ERGERGEKGERGEQGRDGPPGLPGTPGPPGPPGPKVSVDEPGPGL-------SGEQGPPG 2111 Query: 116 QLEARQTPAFSFTEAAL----MPGIVQE--GPGPHA-------------AQPE--VGLQE 154 A+ P + + +PGI + PGP A PE GLQ Sbjct: 2112 LKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQG 2171 Query: 155 PPPAPGPV 162 P PGPV Sbjct: 2172 PRGPPGPV 2179 >gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] Length = 2285 Score = 40.4 bits (93), Expect = 0.001 Identities = 46/177 (25%), Positives = 65/177 (36%), Gaps = 26/177 (14%) Query: 17 QASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREP-----PARAQPAPPAGRGQR 71 Q S P PG SG + QP+ P + MR +P P Q PP+G Q Sbjct: 355 QRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQG 414 Query: 72 GG------GSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAF 125 G GS R + G ++ +G Y + +G+ G G + QTP + Sbjct: 415 HGYPGQPYGSQTPQRYPMTMQGRAQS---AMGGLSYTQQIPPYGQQGPSGYGQQGQTPYY 471 Query: 126 SFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSPSL-SFRPP 181 + Q+ P P QP Q P P +Q + P L S +PP Sbjct: 472 N-----------QQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPP 517 Score = 31.6 bits (70), Expect = 0.51 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 17/68 (25%) Query: 14 APNQASGGPPTEPGCSGVDREDPVDPVQ-----------------PAKPTAYVKPMRREP 56 A Q++G P P GV+R D + P P+A V PM R P Sbjct: 1509 ANRQSTGSAPQGPAYHGVNRTDEMLHTDQRANHEGSWPSHGTRQPPYGPSAPVPPMTRPP 1568 Query: 57 PARAQPAP 64 P+ QP P Sbjct: 1569 PSNYQPPP 1576 Score = 28.1 bits (61), Expect = 5.6 Identities = 35/135 (25%), Positives = 49/135 (36%), Gaps = 18/135 (13%) Query: 55 EPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQ 114 E PA P P Q G S G G G+G+G GPG N +G G + Sbjct: 59 EGPAVGPPQPLGKELQDGAESNGGGGGGGAGSG--------GGPGAEPDLKNSNGNAGPR 110 Query: 115 GQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPG---PVAVARQTMLA 171 L T G+ G PH+A + PPPA G P + + A Sbjct: 111 PALNNNLTEPPGGGGGGSSDGV---GAPPHSAAAAL----PPPAYGFGQPYGRSPSAVAA 163 Query: 172 PSPSLSFRPPGGSST 186 + ++ + GG + Sbjct: 164 AAAAVFHQQHGGQQS 178 >gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] Length = 2068 Score = 40.4 bits (93), Expect = 0.001 Identities = 46/177 (25%), Positives = 65/177 (36%), Gaps = 26/177 (14%) Query: 17 QASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREP-----PARAQPAPPAGRGQR 71 Q S P PG SG + QP+ P + MR +P P Q PP+G Q Sbjct: 355 QRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQG 414 Query: 72 GG------GSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAF 125 G GS R + G ++ +G Y + +G+ G G + QTP + Sbjct: 415 HGYPGQPYGSQTPQRYPMTMQGRAQS---AMGGLSYTQQIPPYGQQGPSGYGQQGQTPYY 471 Query: 126 SFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSPSL-SFRPP 181 + Q+ P P QP Q P P +Q + P L S +PP Sbjct: 472 N-----------QQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPP 517 Score = 28.1 bits (61), Expect = 5.6 Identities = 35/135 (25%), Positives = 49/135 (36%), Gaps = 18/135 (13%) Query: 55 EPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQ 114 E PA P P Q G S G G G+G+G GPG N +G G + Sbjct: 59 EGPAVGPPQPLGKELQDGAESNGGGGGGGAGSG--------GGPGAEPDLKNSNGNAGPR 110 Query: 115 GQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPG---PVAVARQTMLA 171 L T G+ G PH+A + PPPA G P + + A Sbjct: 111 PALNNNLTEPPGGGGGGSSDGV---GAPPHSAAAAL----PPPAYGFGQPYGRSPSAVAA 163 Query: 172 PSPSLSFRPPGGSST 186 + ++ + GG + Sbjct: 164 AAAAVFHQQHGGQQS 178 >gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapiens] Length = 678 Score = 40.4 bits (93), Expect = 0.001 Identities = 50/162 (30%), Positives = 61/162 (37%), Gaps = 29/162 (17%) Query: 22 PPTEPGCSGV-DREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGR 80 PP P G +R P P P P R PPA P+PPA G RGGG+ R Sbjct: 81 PPAAPRRRGSPERARPPPPPPPPAPP-------RPPPAA--PSPPAAPGPRGGGASPGAR 131 Query: 81 ------GRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMP 134 GS + + G G G L+ N H E R PA A P Sbjct: 132 RSDFLQKTGSNSFTVHPRGLHRGAGARLLS-NGH------SAPEPRAGPANRL--AGSPP 182 Query: 135 GIVQEGPGPHAAQPEVGLQEPPPAPG-PVAVARQTMLAPSPS 175 G Q P + P + PPP+PG P A + +PS Sbjct: 183 GSGQWKPKVESGDPSL---HPPPSPGTPSATPASPPASATPS 221 Score = 30.0 bits (66), Expect = 1.5 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 3/47 (6%) Query: 143 PHAAQPEVGLQE---PPPAPGPVAVARQTMLAPSPSLSFRPPGGSST 186 P AA G E PPP P P A R APSP + P GG ++ Sbjct: 81 PPAAPRRRGSPERARPPPPPPPPAPPRPPPAAPSPPAAPGPRGGGAS 127 >gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapiens] Length = 650 Score = 40.4 bits (93), Expect = 0.001 Identities = 50/162 (30%), Positives = 61/162 (37%), Gaps = 29/162 (17%) Query: 22 PPTEPGCSGV-DREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGR 80 PP P G +R P P P P R PPA P+PPA G RGGG+ R Sbjct: 81 PPAAPRRRGSPERARPPPPPPPPAPP-------RPPPAA--PSPPAAPGPRGGGASPGAR 131 Query: 81 ------GRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMP 134 GS + + G G G L+ N H E R PA A P Sbjct: 132 RSDFLQKTGSNSFTVHPRGLHRGAGARLLS-NGH------SAPEPRAGPANRL--AGSPP 182 Query: 135 GIVQEGPGPHAAQPEVGLQEPPPAPG-PVAVARQTMLAPSPS 175 G Q P + P + PPP+PG P A + +PS Sbjct: 183 GSGQWKPKVESGDPSL---HPPPSPGTPSATPASPPASATPS 221 Score = 30.0 bits (66), Expect = 1.5 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 3/47 (6%) Query: 143 PHAAQPEVGLQE---PPPAPGPVAVARQTMLAPSPSLSFRPPGGSST 186 P AA G E PPP P P A R APSP + P GG ++ Sbjct: 81 PPAAPRRRGSPERARPPPPPPPPAPPRPPPAAPSPPAAPGPRGGGAS 127 >gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] Length = 1073 Score = 40.0 bits (92), Expect = 0.001 Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 9/91 (9%) Query: 10 PRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRG 69 P FL P GPP EPG GV ++ V P +P +P K R +P + PP G+G Sbjct: 806 PGFLGPR----GPPGEPGEKGVPGKEGV-PGKPGEPG--FKGERGDPGIKGDKGPPGGKG 858 Query: 70 QRGGGSWRAGRGRGSGAGLLRALGER--VGP 98 Q G +G G GE VGP Sbjct: 859 QPGDPGIPGHKGHTGLMGPQGLPGENGPVGP 889 Score = 35.8 bits (81), Expect = 0.027 Identities = 51/186 (27%), Positives = 69/186 (37%), Gaps = 35/186 (18%) Query: 21 GPPTEPGCSGVDREDP---------VDPVQPAKPTAYVKPMRREPPA-----RAQPAPPA 66 GPP +PG G+ E P + + T + + PPA + +P PP Sbjct: 891 GPPGQPGFPGLRGESPSMETLRRLIQEELGKQLETRLAYLLAQMPPAYMKSSQGRPGPPG 950 Query: 67 GRGQRG--------GGSWRAGRGRGSG-AGLLRALGERVG---PGMYLVHLNDHGELGYQ 114 G+ G G R G+G G +G + GER PG V L GE+G Sbjct: 951 PPGKDGLPGRAGPMGEPGRPGQGGLEGPSGPIGPKGERGAKGDPGAPGVGL--RGEMGPP 1008 Query: 115 GQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSP 174 G P ++ +PGI PGP G P PGP + A Sbjct: 1009 GIPGQPGEPGYAKDG---LPGI----PGPQGETGPAGHPGLPGPPGPPGQCDPSQCAYFA 1061 Query: 175 SLSFRP 180 SL+ RP Sbjct: 1062 SLAARP 1067 Score = 30.4 bits (67), Expect = 1.1 Identities = 39/148 (26%), Positives = 50/148 (33%), Gaps = 15/148 (10%) Query: 23 PTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGRGR 82 P PG G E DP P +P +P P + PP +GQ G G Sbjct: 343 PRMPGEQGPKGEKG-DPGLPGEPGLQGRPGELGP--QGPTGPPGAKGQEGAHGAPGAAGN 399 Query: 83 GSGAGLLRALGERVGPGMYLV--------HLNDHGELGYQGQLEARQTPAFSFTEAALMP 134 G + A G PG + GE G G+ E P + P Sbjct: 400 PGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAGE-EGSPGPVGPRGDPG-AP 457 Query: 135 GIVQEGPGPHAAQPEVGLQEPPPAPGPV 162 G+ GP E GL+ P PGP+ Sbjct: 458 GL--PGPPGKGKDGEPGLRGSPGLPGPL 483 >gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] Length = 237 Score = 40.0 bits (92), Expect = 0.001 Identities = 47/176 (26%), Positives = 66/176 (37%), Gaps = 31/176 (17%) Query: 4 PRHSKRPRFLAPNQASGGPPTEPG---CSGVDREDPVDPVQPAKPTAYVKPMRREPPARA 60 PR +++ P +A+ GPP P GV+ + QP +P RR PPA Sbjct: 72 PRENRKRA--VPARAARGPPKRPAGGQTGGVEAASGEERSQPRRP-------RRPPPAPR 122 Query: 61 QPAPPAGR------------GQRGGGSWRAGRGRGSG--AGLLRALGERVGPGMYLVHLN 106 +P P GR ++GG S R G GSG G +G L Sbjct: 123 RPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTTFP 182 Query: 107 DHGELGYQGQLE----ARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPA 158 G+ G+ E R+ P+ + + P AA P G + PPPA Sbjct: 183 GSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAA-PRAGPEAPPPA 237 >gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] Length = 237 Score = 40.0 bits (92), Expect = 0.001 Identities = 47/176 (26%), Positives = 66/176 (37%), Gaps = 31/176 (17%) Query: 4 PRHSKRPRFLAPNQASGGPPTEPG---CSGVDREDPVDPVQPAKPTAYVKPMRREPPARA 60 PR +++ P +A+ GPP P GV+ + QP +P RR PPA Sbjct: 72 PRENRKRA--VPARAARGPPKRPAGGQTGGVEAASGEERSQPRRP-------RRPPPAPR 122 Query: 61 QPAPPAGR------------GQRGGGSWRAGRGRGSG--AGLLRALGERVGPGMYLVHLN 106 +P P GR ++GG S R G GSG G +G L Sbjct: 123 RPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTTFP 182 Query: 107 DHGELGYQGQLE----ARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPA 158 G+ G+ E R+ P+ + + P AA P G + PPPA Sbjct: 183 GSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAA-PRAGPEAPPPA 237 >gi|77681565 NG5 protein [Homo sapiens] Length = 306 Score = 40.0 bits (92), Expect = 0.001 Identities = 46/157 (29%), Positives = 63/157 (40%), Gaps = 15/157 (9%) Query: 10 PRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRG 69 P P A+G PP PGC+ + R P DP + T + P+ PPA A P PPA Sbjct: 85 PHHAPPGPAAGAPP--PGCATLPRMPP-DPY--LQETRFEGPLPPPPPAAAAPPPPAPAQ 139 Query: 70 QRGGGSWRAGRGRGSGAGLLRALGERVGPG--MYLVHLNDHGELGYQGQLEARQTPAFSF 127 + G+ L LG V PG + L + + G A TP + Sbjct: 140 TAQAPGFVVPTHAGTVGTL--PLGGYVAPGYPLQLQPCTAYVPVYPVGTPYAGGTPGGTG 197 Query: 128 TEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAV 164 + L P +GPG +P + PP P+AV Sbjct: 198 VTSTLPP--PPQGPGLALLEP----RRPPHDYMPIAV 228 >gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] Length = 1626 Score = 40.0 bits (92), Expect = 0.001 Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 9/91 (9%) Query: 10 PRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRG 69 P FL P GPP EPG GV ++ V P +P +P K R +P + PP G+G Sbjct: 1359 PGFLGPR----GPPGEPGEKGVPGKEGV-PGKPGEPG--FKGERGDPGIKGDKGPPGGKG 1411 Query: 70 QRGGGSWRAGRGRGSGAGLLRALGER--VGP 98 Q G +G G GE VGP Sbjct: 1412 QPGDPGIPGHKGHTGLMGPQGLPGENGPVGP 1442 Score = 35.8 bits (81), Expect = 0.027 Identities = 51/186 (27%), Positives = 69/186 (37%), Gaps = 35/186 (18%) Query: 21 GPPTEPGCSGVDREDP---------VDPVQPAKPTAYVKPMRREPPA-----RAQPAPPA 66 GPP +PG G+ E P + + T + + PPA + +P PP Sbjct: 1444 GPPGQPGFPGLRGESPSMETLRRLIQEELGKQLETRLAYLLAQMPPAYMKSSQGRPGPPG 1503 Query: 67 GRGQRG--------GGSWRAGRGRGSG-AGLLRALGERVG---PGMYLVHLNDHGELGYQ 114 G+ G G R G+G G +G + GER PG V L GE+G Sbjct: 1504 PPGKDGLPGRAGPMGEPGRPGQGGLEGPSGPIGPKGERGAKGDPGAPGVGL--RGEMGPP 1561 Query: 115 GQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSP 174 G P ++ +PGI PGP G P PGP + A Sbjct: 1562 GIPGQPGEPGYAKDG---LPGI----PGPQGETGPAGHPGLPGPPGPPGQCDPSQCAYFA 1614 Query: 175 SLSFRP 180 SL+ RP Sbjct: 1615 SLAARP 1620 Score = 30.4 bits (67), Expect = 1.1 Identities = 39/148 (26%), Positives = 50/148 (33%), Gaps = 15/148 (10%) Query: 23 PTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGRGR 82 P PG G E DP P +P +P P + PP +GQ G G Sbjct: 861 PRMPGEQGPKGEKG-DPGLPGEPGLQGRPGELGP--QGPTGPPGAKGQEGAHGAPGAAGN 917 Query: 83 GSGAGLLRALGERVGPGMYLV--------HLNDHGELGYQGQLEARQTPAFSFTEAALMP 134 G + A G PG + GE G G+ E P + P Sbjct: 918 PGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAGE-EGSPGPVGPRGDPG-AP 975 Query: 135 GIVQEGPGPHAAQPEVGLQEPPPAPGPV 162 G+ GP E GL+ P PGP+ Sbjct: 976 GL--PGPPGKGKDGEPGLRGSPGLPGPL 1001 Score = 27.3 bits (59), Expect = 9.6 Identities = 32/113 (28%), Positives = 38/113 (33%), Gaps = 10/113 (8%) Query: 50 KPMRREPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHG 109 K MR EP +P P G RG G G GER G G Sbjct: 547 KGMRGEPGELGEPGLPGEVGMRGPQGPPGLPGPPGRVGAPGLQGERGEKGT-------RG 599 Query: 110 ELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPV 162 E G +G P + + P V GP + +VG PP PG V Sbjct: 600 EKGERGLDGFPGKPGDTGQQGRPGPSGVA---GPQGEKGDVGPAGPPGVPGSV 649 >gi|4559408 colony stimulating factor 2 receptor, beta precursor [Homo sapiens] Length = 897 Score = 39.7 bits (91), Expect = 0.002 Identities = 55/216 (25%), Positives = 77/216 (35%), Gaps = 49/216 (22%) Query: 1 MEEPRHSKRPRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTA------------- 47 +E+P+H P GP T P S + E P P QP P A Sbjct: 539 IEDPKHVCDP--------PSGPDTTPAASDLPTEQPPSP-QPGPPAASHTPEKQASSFDF 589 Query: 48 ---YVKP--MRREPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYL 102 Y+ P R P QP PP Q GG + G L L G + L Sbjct: 590 NGPYLGPPHSRSLPDILGQPEPP----QEGGSQ------KSPPPGSLEYLCLPAGGQVQL 639 Query: 103 VHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPV 162 V L G ++E R + + + + G GP P A P VG Q+ +P + Sbjct: 640 VPLAQAMGPGQAVEVERRPSQGAAGSPSLESGG----GPAPPALGPRVGGQDQKDSPVAI 695 Query: 163 AVARQTMLAP--------SPSLSFRPPGGSSTLRIV 190 ++ P S L F P G+S++ +V Sbjct: 696 PMSSGDTEDPGVASGYVSSADLVFTPNSGASSVSLV 731 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.313 0.134 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,420,434 Number of Sequences: 37866 Number of extensions: 860848 Number of successful extensions: 8473 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 205 Number of HSP's successfully gapped in prelim test: 700 Number of HSP's that attempted gapping in prelim test: 6075 Number of HSP's gapped (non-prelim): 2749 length of query: 210 length of database: 18,247,518 effective HSP length: 98 effective length of query: 112 effective length of database: 14,536,650 effective search space: 1628104800 effective search space used: 1628104800 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.