Guide to the Human Genome
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Search of human proteins with 169165603

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169165603 PREDICTED: similar to proline rich 20 [Homo
sapiens]
         (210 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169165603 PREDICTED: similar to proline rich 20 [Homo sapiens]     436   e-123
gi|169166067 PREDICTED: similar to proline rich 20 [Homo sapiens]     436   e-123
gi|239752488 PREDICTED: FLJ40296 protein family member [Homo sap...   219   1e-57
gi|38348198 proline rich 20 [Homo sapiens]                            219   1e-57
gi|194353955 hypothetical protein LOC729250 [Homo sapiens]            219   1e-57
gi|194353953 hypothetical protein LOC729246 [Homo sapiens]            219   1e-57
gi|194353951 hypothetical protein LOC729240 [Homo sapiens]            219   1e-57
gi|194353949 hypothetical protein LOC729233 [Homo sapiens]            219   1e-57
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    48   5e-06
gi|224465238 hypothetical protein LOC283999 [Homo sapiens]             42   5e-04
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s...    42   5e-04
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s...    42   5e-04
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s...    42   5e-04
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s...    42   5e-04
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]                    41   6e-04
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]    41   8e-04
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot...    41   8e-04
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    40   0.001
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    40   0.001
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]          40   0.001
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]     40   0.001
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]     40   0.001
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi...    40   0.001
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi...    40   0.001
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]      40   0.001
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]            40   0.001
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]            40   0.001
gi|77681565 NG5 protein [Homo sapiens]                                 40   0.001
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]                40   0.001
gi|4559408 colony stimulating factor 2 receptor, beta precursor ...    40   0.002

>gi|169165603 PREDICTED: similar to proline rich 20 [Homo sapiens]
          Length = 210

 Score =  436 bits (1121), Expect = e-123
 Identities = 210/210 (100%), Positives = 210/210 (100%)

Query: 1   MEEPRHSKRPRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARA 60
           MEEPRHSKRPRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARA
Sbjct: 1   MEEPRHSKRPRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARA 60

Query: 61  QPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEAR 120
           QPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEAR
Sbjct: 61  QPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEAR 120

Query: 121 QTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSPSLSFRP 180
           QTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSPSLSFRP
Sbjct: 121 QTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSPSLSFRP 180

Query: 181 PGGSSTLRIVQTSNSTIVQSVPVFPAHSAH 210
           PGGSSTLRIVQTSNSTIVQSVPVFPAHSAH
Sbjct: 181 PGGSSTLRIVQTSNSTIVQSVPVFPAHSAH 210


>gi|169166067 PREDICTED: similar to proline rich 20 [Homo sapiens]
          Length = 210

 Score =  436 bits (1121), Expect = e-123
 Identities = 210/210 (100%), Positives = 210/210 (100%)

Query: 1   MEEPRHSKRPRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARA 60
           MEEPRHSKRPRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARA
Sbjct: 1   MEEPRHSKRPRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARA 60

Query: 61  QPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEAR 120
           QPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEAR
Sbjct: 61  QPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEAR 120

Query: 121 QTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSPSLSFRP 180
           QTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSPSLSFRP
Sbjct: 121 QTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSPSLSFRP 180

Query: 181 PGGSSTLRIVQTSNSTIVQSVPVFPAHSAH 210
           PGGSSTLRIVQTSNSTIVQSVPVFPAHSAH
Sbjct: 181 PGGSSTLRIVQTSNSTIVQSVPVFPAHSAH 210


>gi|239752488 PREDICTED: FLJ40296 protein family member [Homo
           sapiens]
          Length = 221

 Score =  219 bits (559), Expect = 1e-57
 Identities = 117/216 (54%), Positives = 139/216 (64%), Gaps = 13/216 (6%)

Query: 1   MEEPRHSKRPRFLAPNQASGGPPTEPGC------SGVDREDPVDPVQPAKPTAYVKPMRR 54
           MEEPR SKR R +APNQASGGPP EPGC        V+ + P  P QPAKP AYVKP RR
Sbjct: 1   MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60

Query: 55  EPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVG------PGMYLVHLNDH 108
           +PPAR +  PPA RG+R GGS R GRGRG  AG     G+R G      P ++ + L+ H
Sbjct: 61  QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVH-IQLDHH 119

Query: 109 GELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQT 168
           GE G+QG+ E  +T AFS +E    PG VQEGPGP  AQPE+G QEPP APGP AV  Q 
Sbjct: 120 GEPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQP 179

Query: 169 MLAPSPSLSFRPPGGSSTLRIVQTSNSTIVQSVPVF 204
           +L   P + FR  G S+ L+++QT   T VQ VPVF
Sbjct: 180 VLTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVF 215


>gi|38348198 proline rich 20 [Homo sapiens]
          Length = 221

 Score =  219 bits (559), Expect = 1e-57
 Identities = 117/216 (54%), Positives = 139/216 (64%), Gaps = 13/216 (6%)

Query: 1   MEEPRHSKRPRFLAPNQASGGPPTEPGC------SGVDREDPVDPVQPAKPTAYVKPMRR 54
           MEEPR SKR R +APNQASGGPP EPGC        V+ + P  P QPAKP AYVKP RR
Sbjct: 1   MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60

Query: 55  EPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVG------PGMYLVHLNDH 108
           +PPAR +  PPA RG+R GGS R GRGRG  AG     G+R G      P ++ + L+ H
Sbjct: 61  QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVH-IQLDHH 119

Query: 109 GELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQT 168
           GE G+QG+ E  +T AFS +E    PG VQEGPGP  AQPE+G QEPP APGP AV  Q 
Sbjct: 120 GEPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQP 179

Query: 169 MLAPSPSLSFRPPGGSSTLRIVQTSNSTIVQSVPVF 204
           +L   P + FR  G S+ L+++QT   T VQ VPVF
Sbjct: 180 VLTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVF 215


>gi|194353955 hypothetical protein LOC729250 [Homo sapiens]
          Length = 221

 Score =  219 bits (559), Expect = 1e-57
 Identities = 117/216 (54%), Positives = 139/216 (64%), Gaps = 13/216 (6%)

Query: 1   MEEPRHSKRPRFLAPNQASGGPPTEPGC------SGVDREDPVDPVQPAKPTAYVKPMRR 54
           MEEPR SKR R +APNQASGGPP EPGC        V+ + P  P QPAKP AYVKP RR
Sbjct: 1   MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60

Query: 55  EPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVG------PGMYLVHLNDH 108
           +PPAR +  PPA RG+R GGS R GRGRG  AG     G+R G      P ++ + L+ H
Sbjct: 61  QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVH-IQLDHH 119

Query: 109 GELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQT 168
           GE G+QG+ E  +T AFS +E    PG VQEGPGP  AQPE+G QEPP APGP AV  Q 
Sbjct: 120 GEPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQP 179

Query: 169 MLAPSPSLSFRPPGGSSTLRIVQTSNSTIVQSVPVF 204
           +L   P + FR  G S+ L+++QT   T VQ VPVF
Sbjct: 180 VLTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVF 215


>gi|194353953 hypothetical protein LOC729246 [Homo sapiens]
          Length = 221

 Score =  219 bits (559), Expect = 1e-57
 Identities = 117/216 (54%), Positives = 139/216 (64%), Gaps = 13/216 (6%)

Query: 1   MEEPRHSKRPRFLAPNQASGGPPTEPGC------SGVDREDPVDPVQPAKPTAYVKPMRR 54
           MEEPR SKR R +APNQASGGPP EPGC        V+ + P  P QPAKP AYVKP RR
Sbjct: 1   MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60

Query: 55  EPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVG------PGMYLVHLNDH 108
           +PPAR +  PPA RG+R GGS R GRGRG  AG     G+R G      P ++ + L+ H
Sbjct: 61  QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVH-IQLDHH 119

Query: 109 GELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQT 168
           GE G+QG+ E  +T AFS +E    PG VQEGPGP  AQPE+G QEPP APGP AV  Q 
Sbjct: 120 GEPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQP 179

Query: 169 MLAPSPSLSFRPPGGSSTLRIVQTSNSTIVQSVPVF 204
           +L   P + FR  G S+ L+++QT   T VQ VPVF
Sbjct: 180 VLTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVF 215


>gi|194353951 hypothetical protein LOC729240 [Homo sapiens]
          Length = 221

 Score =  219 bits (559), Expect = 1e-57
 Identities = 117/216 (54%), Positives = 139/216 (64%), Gaps = 13/216 (6%)

Query: 1   MEEPRHSKRPRFLAPNQASGGPPTEPGC------SGVDREDPVDPVQPAKPTAYVKPMRR 54
           MEEPR SKR R +APNQASGGPP EPGC        V+ + P  P QPAKP AYVKP RR
Sbjct: 1   MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60

Query: 55  EPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVG------PGMYLVHLNDH 108
           +PPAR +  PPA RG+R GGS R GRGRG  AG     G+R G      P ++ + L+ H
Sbjct: 61  QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVH-IQLDHH 119

Query: 109 GELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQT 168
           GE G+QG+ E  +T AFS +E    PG VQEGPGP  AQPE+G QEPP APGP AV  Q 
Sbjct: 120 GEPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQP 179

Query: 169 MLAPSPSLSFRPPGGSSTLRIVQTSNSTIVQSVPVF 204
           +L   P + FR  G S+ L+++QT   T VQ VPVF
Sbjct: 180 VLTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVF 215


>gi|194353949 hypothetical protein LOC729233 [Homo sapiens]
          Length = 221

 Score =  219 bits (559), Expect = 1e-57
 Identities = 117/216 (54%), Positives = 139/216 (64%), Gaps = 13/216 (6%)

Query: 1   MEEPRHSKRPRFLAPNQASGGPPTEPGC------SGVDREDPVDPVQPAKPTAYVKPMRR 54
           MEEPR SKR R +APNQASGGPP EPGC        V+ + P  P QPAKP AYVKP RR
Sbjct: 1   MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60

Query: 55  EPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVG------PGMYLVHLNDH 108
           +PPAR +  PPA RG+R GGS R GRGRG  AG     G+R G      P ++ + L+ H
Sbjct: 61  QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVH-IQLDHH 119

Query: 109 GELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQT 168
           GE G+QG+ E  +T AFS +E    PG VQEGPGP  AQPE+G QEPP APGP AV  Q 
Sbjct: 120 GEPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQP 179

Query: 169 MLAPSPSLSFRPPGGSSTLRIVQTSNSTIVQSVPVF 204
           +L   P + FR  G S+ L+++QT   T VQ VPVF
Sbjct: 180 VLTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVF 215


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 48.1 bits (113), Expect = 5e-06
 Identities = 56/194 (28%), Positives = 65/194 (33%), Gaps = 38/194 (19%)

Query: 20  GGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRR---------------------EPPA 58
           GG P  PG     R  P+ P  PA P A ++P                         P  
Sbjct: 99  GGGPQRPGPPSPRR--PLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAG 156

Query: 59  RAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLE 118
            A+PA PA    R G     G G G G G     G+  GPG     LN    L       
Sbjct: 157 PAKPAGPAALAARAGPGPGPGPGPGPGPGP----GKPAGPGAAQT-LNGSAALLNSHHAA 211

Query: 119 ARQTPAFSFTEAALMPGIVQEGPGP---------HAAQPEVGLQEPPPAPGPVA-VARQT 168
           A      +   AAL+P      PG           AA P      PP AP P A  A   
Sbjct: 212 APAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPP 271

Query: 169 MLAPSPSLSFRPPG 182
              P+P+   RPPG
Sbjct: 272 PPPPAPATLARPPG 285



 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 52/187 (27%), Positives = 68/187 (36%), Gaps = 17/187 (9%)

Query: 15  PNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGG 74
           P  A+  PP  P  +      P  P  PA  T    P     P  A PA P     + GG
Sbjct: 250 PAPAAPSPPAAPAPAAPAAAPPPPP--PAPATLARPPGHPAGPPTAAPAVPPPAAAQNGG 307

Query: 75  SWRAGRGRGSGAGLLRALGERVGPGMYLVH-----LNDHGELGYQGQLEARQTPAFS--- 126
           S  A       AG    +  + GPG            +  +   Q    A QT A S   
Sbjct: 308 SAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPA 367

Query: 127 FTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPG-PVAVARQTMLAPSPSLSFRPPGGSS 185
            T A+++ G   +G  P  A        PPPAPG P  + +    A + SLS  P   +S
Sbjct: 368 STAASMVIGPTMQGALPSPA------AVPPPAPGTPTGLPKGAAGAVTQSLSRTPTATTS 421

Query: 186 TLRIVQT 192
            +R   T
Sbjct: 422 GIRATLT 428



 Score = 31.2 bits (69), Expect = 0.67
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 7/85 (8%)

Query: 119 ARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSPSLSF 178
           A Q P  S T+   + G+ ++G      QP   + + PP PG +    Q  L  +P ++ 
Sbjct: 716 ALQPPVLSLTQPTQV-GVGKQG------QPTPLVIQQPPKPGALIRPPQVTLTQTPMVAL 768

Query: 179 RPPGGSSTLRIVQTSNSTIVQSVPV 203
           R P     L   Q      +Q VPV
Sbjct: 769 RQPHNRIMLTTPQQIQLNPLQPVPV 793


>gi|224465238 hypothetical protein LOC283999 [Homo sapiens]
          Length = 394

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 47/138 (34%), Positives = 53/138 (38%), Gaps = 8/138 (5%)

Query: 51  PMRREPPARAQPAPPAGRGQRGGGSWRAGRGRGSG-AGLLRALGERVGPGMYLVHLNDHG 109
           P R   PA   P+PPAGR    G + RA  GR  G    LRA G R G    LVH    G
Sbjct: 165 PRRPRGPATPDPSPPAGRPH--GPAGRAAPGRRPGCTAQLRAPGRR-GRQRLLVHPGGGG 221

Query: 110 ELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQ-PEVGLQEPPPAPGPVAVA--- 165
              +Q    AR+    +    A +      G G H  Q    GL     A  P A A   
Sbjct: 222 RRQWQRLARARRAALLALGALAHLRRCPDTGGGQHLHQLLAPGLCGDGAAVWPAAHAGRP 281

Query: 166 RQTMLAPSPSLSFRPPGG 183
           RQ  L   P L     GG
Sbjct: 282 RQLRLVHGPGLGLLCLGG 299


>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
            sapiens]
          Length = 1424

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 46/162 (28%), Positives = 57/162 (35%), Gaps = 21/162 (12%)

Query: 10   PRFLAPNQASG-GPPTEPGCSGVDREDPVDPVQPAKPTAYVK--------PMRREPPARA 60
            P  + P Q    GPP   G  G     P  P  P      +K        P  + PP  A
Sbjct: 1230 PGAIIPGQTGNRGPPGSRGSPGA----PGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTA 1285

Query: 61   QPAPPAGR-GQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEA 119
                P GR G  G       RG     G     GE+  PG +L  +   G +G +G    
Sbjct: 1286 GDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPG-FLGSIGPPGPIGPKGPPGV 1344

Query: 120  RQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGP 161
            R  P     +   +PG     PGP     E G+Q  P  PGP
Sbjct: 1345 RGDPGT--LKIISLPG----SPGPPGTPGEPGMQGEPGPPGP 1380



 Score = 28.9 bits (63), Expect = 3.3
 Identities = 40/156 (25%), Positives = 54/156 (34%), Gaps = 30/156 (19%)

Query: 21   GPPTEPGCSGV--DREDPVDPVQPAKPTAYVKPMRREPPA-RAQPAPPAGRGQRGGGSWR 77
            G P  PG  G+  D+ +P           Y +  R  PP     P  P   G++G     
Sbjct: 1039 GRPGLPGIHGLQGDKGEP----------GYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQP 1088

Query: 78   AGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIV 137
               G    AG   A G    PG+       HG+LG++G       P         +PG  
Sbjct: 1089 GPPGHLGPAGPEGAPGSPGSPGLP-GKPGPHGDLGFKGIKGLLGPPGIRGPPG--LPGFP 1145

Query: 138  -------------QEG-PGPHAAQPEVGLQEPPPAP 159
                         ++G PGP   + E GL   PP P
Sbjct: 1146 GSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGP 1181



 Score = 28.1 bits (61), Expect = 5.6
 Identities = 40/140 (28%), Positives = 47/140 (33%), Gaps = 43/140 (30%)

Query: 21  GPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGR 80
           GP  E   SG ++ D   P  P  P +         P  A PA P G G +G        
Sbjct: 581 GPKGELALSG-EKGDQGPPGDPGSPGS---------PGPAGPAGPPGYGPQGE------- 623

Query: 81  GRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIVQEG 140
                 GL    G    PG         GE G +G+L    TP         +PG     
Sbjct: 624 -----PGLQGTQGVPGAPG-------PPGEAGPRGELSV-STP---------VPG----P 657

Query: 141 PGPHAAQPEVGLQEPPPAPG 160
           PGP       G Q PP  PG
Sbjct: 658 PGPPGPPGHPGPQGPPGIPG 677



 Score = 27.3 bits (59), Expect = 9.6
 Identities = 29/92 (31%), Positives = 34/92 (36%), Gaps = 19/92 (20%)

Query: 26  PGCSGVD----REDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGG-------- 73
           PG  G D    ++  + P     PT Y    + E      P PP  RG RG         
Sbjct: 320 PGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQ-EKGDEGTPGPPGPRGARGPQGPSGPPG 378

Query: 74  -----GSWRAG-RGRGSGAGLLRALGERVGPG 99
                GS R G RG     GL  + GER  PG
Sbjct: 379 VPGSPGSSRPGLRGAPGWPGLKGSKGERGRPG 410


>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
            sapiens]
          Length = 1494

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 46/162 (28%), Positives = 57/162 (35%), Gaps = 21/162 (12%)

Query: 10   PRFLAPNQASG-GPPTEPGCSGVDREDPVDPVQPAKPTAYVK--------PMRREPPARA 60
            P  + P Q    GPP   G  G     P  P  P      +K        P  + PP  A
Sbjct: 1230 PGAIIPGQTGNRGPPGSRGSPGA----PGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTA 1285

Query: 61   QPAPPAGR-GQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEA 119
                P GR G  G       RG     G     GE+  PG +L  +   G +G +G    
Sbjct: 1286 GDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPG-FLGSIGPPGPIGPKGPPGV 1344

Query: 120  RQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGP 161
            R  P     +   +PG     PGP     E G+Q  P  PGP
Sbjct: 1345 RGDPGT--LKIISLPG----SPGPPGTPGEPGMQGEPGPPGP 1380



 Score = 28.9 bits (63), Expect = 3.3
 Identities = 40/156 (25%), Positives = 54/156 (34%), Gaps = 30/156 (19%)

Query: 21   GPPTEPGCSGV--DREDPVDPVQPAKPTAYVKPMRREPPA-RAQPAPPAGRGQRGGGSWR 77
            G P  PG  G+  D+ +P           Y +  R  PP     P  P   G++G     
Sbjct: 1039 GRPGLPGIHGLQGDKGEP----------GYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQP 1088

Query: 78   AGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIV 137
               G    AG   A G    PG+       HG+LG++G       P         +PG  
Sbjct: 1089 GPPGHLGPAGPEGAPGSPGSPGLP-GKPGPHGDLGFKGIKGLLGPPGIRGPPG--LPGFP 1145

Query: 138  -------------QEG-PGPHAAQPEVGLQEPPPAP 159
                         ++G PGP   + E GL   PP P
Sbjct: 1146 GSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGP 1181



 Score = 28.1 bits (61), Expect = 5.6
 Identities = 40/140 (28%), Positives = 47/140 (33%), Gaps = 43/140 (30%)

Query: 21  GPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGR 80
           GP  E   SG ++ D   P  P  P +         P  A PA P G G +G        
Sbjct: 581 GPKGELALSG-EKGDQGPPGDPGSPGS---------PGPAGPAGPPGYGPQGE------- 623

Query: 81  GRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIVQEG 140
                 GL    G    PG         GE G +G+L    TP         +PG     
Sbjct: 624 -----PGLQGTQGVPGAPG-------PPGEAGPRGELSV-STP---------VPG----P 657

Query: 141 PGPHAAQPEVGLQEPPPAPG 160
           PGP       G Q PP  PG
Sbjct: 658 PGPPGPPGHPGPQGPPGIPG 677



 Score = 27.3 bits (59), Expect = 9.6
 Identities = 29/92 (31%), Positives = 34/92 (36%), Gaps = 19/92 (20%)

Query: 26  PGCSGVD----REDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGG-------- 73
           PG  G D    ++  + P     PT Y    + E      P PP  RG RG         
Sbjct: 320 PGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQ-EKGDEGTPGPPGPRGARGPQGPSGPPG 378

Query: 74  -----GSWRAG-RGRGSGAGLLRALGERVGPG 99
                GS R G RG     GL  + GER  PG
Sbjct: 379 VPGSPGSSRPGLRGAPGWPGLKGSKGERGRPG 410


>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
            sapiens]
          Length = 1637

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 46/162 (28%), Positives = 57/162 (35%), Gaps = 21/162 (12%)

Query: 10   PRFLAPNQASG-GPPTEPGCSGVDREDPVDPVQPAKPTAYVK--------PMRREPPARA 60
            P  + P Q    GPP   G  G     P  P  P      +K        P  + PP  A
Sbjct: 1230 PGAIIPGQTGNRGPPGSRGSPGA----PGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTA 1285

Query: 61   QPAPPAGR-GQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEA 119
                P GR G  G       RG     G     GE+  PG +L  +   G +G +G    
Sbjct: 1286 GDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPG-FLGSIGPPGPIGPKGPPGV 1344

Query: 120  RQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGP 161
            R  P     +   +PG     PGP     E G+Q  P  PGP
Sbjct: 1345 RGDPGT--LKIISLPG----SPGPPGTPGEPGMQGEPGPPGP 1380



 Score = 28.9 bits (63), Expect = 3.3
 Identities = 40/156 (25%), Positives = 54/156 (34%), Gaps = 30/156 (19%)

Query: 21   GPPTEPGCSGV--DREDPVDPVQPAKPTAYVKPMRREPPA-RAQPAPPAGRGQRGGGSWR 77
            G P  PG  G+  D+ +P           Y +  R  PP     P  P   G++G     
Sbjct: 1039 GRPGLPGIHGLQGDKGEP----------GYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQP 1088

Query: 78   AGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIV 137
               G    AG   A G    PG+       HG+LG++G       P         +PG  
Sbjct: 1089 GPPGHLGPAGPEGAPGSPGSPGLP-GKPGPHGDLGFKGIKGLLGPPGIRGPPG--LPGFP 1145

Query: 138  -------------QEG-PGPHAAQPEVGLQEPPPAP 159
                         ++G PGP   + E GL   PP P
Sbjct: 1146 GSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGP 1181



 Score = 28.1 bits (61), Expect = 5.6
 Identities = 40/140 (28%), Positives = 47/140 (33%), Gaps = 43/140 (30%)

Query: 21  GPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGR 80
           GP  E   SG ++ D   P  P  P +         P  A PA P G G +G        
Sbjct: 581 GPKGELALSG-EKGDQGPPGDPGSPGS---------PGPAGPAGPPGYGPQGE------- 623

Query: 81  GRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIVQEG 140
                 GL    G    PG         GE G +G+L    TP         +PG     
Sbjct: 624 -----PGLQGTQGVPGAPG-------PPGEAGPRGELSV-STP---------VPG----P 657

Query: 141 PGPHAAQPEVGLQEPPPAPG 160
           PGP       G Q PP  PG
Sbjct: 658 PGPPGPPGHPGPQGPPGIPG 677



 Score = 27.3 bits (59), Expect = 9.6
 Identities = 29/92 (31%), Positives = 34/92 (36%), Gaps = 19/92 (20%)

Query: 26  PGCSGVD----REDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGG-------- 73
           PG  G D    ++  + P     PT Y    + E      P PP  RG RG         
Sbjct: 320 PGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQ-EKGDEGTPGPPGPRGARGPQGPSGPPG 378

Query: 74  -----GSWRAG-RGRGSGAGLLRALGERVGPG 99
                GS R G RG     GL  + GER  PG
Sbjct: 379 VPGSPGSSRPGLRGAPGWPGLKGSKGERGRPG 410


>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
            sapiens]
          Length = 1670

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 46/162 (28%), Positives = 57/162 (35%), Gaps = 21/162 (12%)

Query: 10   PRFLAPNQASG-GPPTEPGCSGVDREDPVDPVQPAKPTAYVK--------PMRREPPARA 60
            P  + P Q    GPP   G  G     P  P  P      +K        P  + PP  A
Sbjct: 1230 PGAIIPGQTGNRGPPGSRGSPGA----PGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTA 1285

Query: 61   QPAPPAGR-GQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEA 119
                P GR G  G       RG     G     GE+  PG +L  +   G +G +G    
Sbjct: 1286 GDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPG-FLGSIGPPGPIGPKGPPGV 1344

Query: 120  RQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGP 161
            R  P     +   +PG     PGP     E G+Q  P  PGP
Sbjct: 1345 RGDPGT--LKIISLPG----SPGPPGTPGEPGMQGEPGPPGP 1380



 Score = 28.9 bits (63), Expect = 3.3
 Identities = 40/156 (25%), Positives = 54/156 (34%), Gaps = 30/156 (19%)

Query: 21   GPPTEPGCSGV--DREDPVDPVQPAKPTAYVKPMRREPPA-RAQPAPPAGRGQRGGGSWR 77
            G P  PG  G+  D+ +P           Y +  R  PP     P  P   G++G     
Sbjct: 1039 GRPGLPGIHGLQGDKGEP----------GYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQP 1088

Query: 78   AGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIV 137
               G    AG   A G    PG+       HG+LG++G       P         +PG  
Sbjct: 1089 GPPGHLGPAGPEGAPGSPGSPGLP-GKPGPHGDLGFKGIKGLLGPPGIRGPPG--LPGFP 1145

Query: 138  -------------QEG-PGPHAAQPEVGLQEPPPAP 159
                         ++G PGP   + E GL   PP P
Sbjct: 1146 GSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGP 1181



 Score = 28.1 bits (61), Expect = 5.6
 Identities = 40/140 (28%), Positives = 47/140 (33%), Gaps = 43/140 (30%)

Query: 21  GPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGR 80
           GP  E   SG ++ D   P  P  P +         P  A PA P G G +G        
Sbjct: 581 GPKGELALSG-EKGDQGPPGDPGSPGS---------PGPAGPAGPPGYGPQGE------- 623

Query: 81  GRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIVQEG 140
                 GL    G    PG         GE G +G+L    TP         +PG     
Sbjct: 624 -----PGLQGTQGVPGAPG-------PPGEAGPRGELSV-STP---------VPG----P 657

Query: 141 PGPHAAQPEVGLQEPPPAPG 160
           PGP       G Q PP  PG
Sbjct: 658 PGPPGPPGHPGPQGPPGIPG 677



 Score = 27.3 bits (59), Expect = 9.6
 Identities = 29/92 (31%), Positives = 34/92 (36%), Gaps = 19/92 (20%)

Query: 26  PGCSGVD----REDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGG-------- 73
           PG  G D    ++  + P     PT Y    + E      P PP  RG RG         
Sbjct: 320 PGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQ-EKGDEGTPGPPGPRGARGPQGPSGPPG 378

Query: 74  -----GSWRAG-RGRGSGAGLLRALGERVGPG 99
                GS R G RG     GL  + GER  PG
Sbjct: 379 VPGSPGSSRPGLRGAPGWPGLKGSKGERGRPG 410


>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
          Length = 1489

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 44/142 (30%), Positives = 55/142 (38%), Gaps = 12/142 (8%)

Query: 14   APNQASGGPPTEPGCSGVDREDP-VDPVQPAKPTAYVKPMRREPPARAQPAPPAGR---- 68
            AP      P   PG SGVD +   VD  +P  P   + P     P R +PAPP  R    
Sbjct: 1144 APVGTGTAPGGGPG-SGVDAKAGWVDNTRPQPPPPPLPPPPEAQPRRLEPAPPRARPEVA 1202

Query: 69   --GQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFS 126
              G+ G    RAG              ER GP M  + L+     G   Q++AR     S
Sbjct: 1203 PEGEPGAPDSRAGGDTALSGDGDPPKPERKGPEMPRLFLDLGPPQGNSEQIKAR----LS 1258

Query: 127  FTEAALMPGIVQEGPGPHAAQP 148
                AL P  +   PGP   +P
Sbjct: 1259 RLSLALPPLTLTPFPGPGPRRP 1280



 Score = 31.6 bits (70), Expect = 0.51
 Identities = 33/126 (26%), Positives = 44/126 (34%), Gaps = 16/126 (12%)

Query: 37  VDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERV 96
           +DP+  A    Y  P R  PPA   P PP         S        S    L + G + 
Sbjct: 762 LDPLMGAAAPQY--PGRGPPPAPPPPPPPPRAPADPAASPDPPSAVASPGSGLSSPGPKP 819

Query: 97  GPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPP 156
           G            + GY+ +       AF    AA   G+ +    P    P+ G   PP
Sbjct: 820 G------------DSGYETETPFSPEGAFPGGGAAEEEGVPRPRAPPEP--PDPGAPRPP 865

Query: 157 PAPGPV 162
           P PGP+
Sbjct: 866 PDPGPL 871



 Score = 28.9 bits (63), Expect = 3.3
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 14  APNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPP 65
           +P      P  +PG SG + E P  P + A P          P  RA P PP
Sbjct: 807 SPGSGLSSPGPKPGDSGYETETPFSP-EGAFPGGGAAEEEGVPRPRAPPEPP 857



 Score = 27.3 bits (59), Expect = 9.6
 Identities = 35/124 (28%), Positives = 47/124 (37%), Gaps = 19/124 (15%)

Query: 39   PVQPAKPTAYVKP--MRREPPARAQP-APPAGRGQRGGGSWRAGRGRGSGAGLLRALGER 95
            P+ PA     ++P   RR P     P AP AGR   G G  RA  G G+  G        
Sbjct: 1103 PLGPAPKNGTLEPGTERRAPETGGAPRAPGAGRLDLGSGG-RAPVGTGTAPG-------- 1153

Query: 96   VGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEP 155
             GPG  +       + G+      +  P          P  ++  P P  A+PEV  +  
Sbjct: 1154 GGPGSGV-----DAKAGWVDNTRPQPPPPPLPPPPEAQPRRLE--PAPPRARPEVAPEGE 1206

Query: 156  PPAP 159
            P AP
Sbjct: 1207 PGAP 1210


>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
          Length = 1745

 Score = 40.8 bits (94), Expect = 8e-04
 Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 21   GPPTEPGCSGVD-----REDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGS 75
            GPP +PG SG+D     + DP D   P  P A  +P    PP +  P+   GR  R G  
Sbjct: 1268 GPPGDPGVSGIDGSPGEKGDPGDVGGPGPPGASGEPGAPGPPGKRGPSGHMGREGREGEK 1327

Query: 76   WRAGR-GRGSGAGLLRALGERVGPG 99
               G  G     G    +G R  PG
Sbjct: 1328 GAKGEPGPDGPPGRTGPMGARGPPG 1352



 Score = 32.3 bits (72), Expect = 0.30
 Identities = 40/158 (25%), Positives = 49/158 (31%), Gaps = 46/158 (29%)

Query: 10  PRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRG 69
           PR L   + S GP   PG +G+D                       P A+    PP   G
Sbjct: 600 PRGLLGPRGSPGPTGRPGVTGID---------------------GAPGAKGNVGPPGEPG 638

Query: 70  QRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVH--LNDHGELGYQGQLEARQTPAFSF 127
             G       +G     GL+   GE+  PG   +       G LG+ G            
Sbjct: 639 PPGQQGNHGSQGLPGPQGLIGTPGEKGPPGNPGIPGLPGSDGPLGHPG------------ 686

Query: 128 TEAALMPGIVQEGP-GPHAAQPEVGLQEPPPAPGPVAV 164
                      EGP G   AQ   G   PP  PGP  V
Sbjct: 687 ----------HEGPTGEKGAQGPPGSAGPPGYPGPRGV 714



 Score = 29.3 bits (64), Expect = 2.5
 Identities = 34/117 (29%), Positives = 41/117 (35%), Gaps = 23/117 (19%)

Query: 53  RREPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLV-----HLND 107
           R +P A  QP P    GQ G       +G     G     G +  PG         H   
Sbjct: 841 RGQPGATGQPGPKGDVGQDGAPGIPGEKGLPGLQGPPGFPGPKGPPGHQGKDGRPGHPGQ 900

Query: 108 HGELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEV---GLQEPPPAPGP 161
            GELG+QGQ           T      G++    GP     EV   G + PP  PGP
Sbjct: 901 RGELGFQGQ-----------TGPPGPAGVL----GPQGKTGEVGPLGERGPPGPPGP 942



 Score = 27.7 bits (60), Expect = 7.4
 Identities = 38/156 (24%), Positives = 48/156 (30%), Gaps = 20/156 (12%)

Query: 21   GPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRRE--------PPARAQPAPPAGRGQRG 72
            GPP   G  G+       P+ P  P     P   E        P  +         G  G
Sbjct: 1046 GPPGPTGKDGIP-----GPLGPLGPPGAAGPSGEEGDKGDVGAPGHKGSKGDKGDAGPPG 1100

Query: 73   GGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQ-----LEARQTPAFSF 127
                R   G     G   A G R  PG++     D G  G+ G      L+    P    
Sbjct: 1101 QPGIRGPAGHPGPPGADGAQGRRGPPGLF-GQKGDDGVRGFVGVIGPPGLQGLPGPPGEK 1159

Query: 128  TEAALMPGIVQEG-PGPHAAQPEVGLQEPPPAPGPV 162
             E   +  +   G PGP   Q   G +  P  PG V
Sbjct: 1160 GEVGDVGSMGPHGAPGPRGPQGPTGSEGTPGLPGGV 1195



 Score = 27.3 bits (59), Expect = 9.6
 Identities = 30/104 (28%), Positives = 36/104 (34%), Gaps = 6/104 (5%)

Query: 62   PAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQ 121
            P PP   G  G       +G    +G     G++  PG         G  G  G L    
Sbjct: 1213 PGPPGAPGIPGPKGDIGEKGDSGPSGAAGPPGKKGPPGEDGAK-GSVGPTGLPGDLGPPG 1271

Query: 122  TPAFSFTEAALM----PGIVQEGPGPHAAQPEVGLQEPPPAPGP 161
             P  S  + +      PG V  GPGP  A  E G   PP   GP
Sbjct: 1272 DPGVSGIDGSPGEKGDPGDVG-GPGPPGASGEPGAPGPPGKRGP 1314


>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
           G-T [Homo sapiens]
          Length = 392

 Score = 40.8 bits (94), Expect = 8e-04
 Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 10/94 (10%)

Query: 4   PRHSKRPRFLAPNQASGGPPTE-PGCSGVDREDPVDPVQPAKPTAYVKPMRREPPAR--- 59
           PR   RPRFL   +  GG P   P   G D +         +P+    PM+R PP R   
Sbjct: 99  PRSRGRPRFLRGTRGGGGGPRRSPSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVG 158

Query: 60  --AQPAPPAGRGQRGGGSWR----AGRGRGSGAG 87
              + A P+G  +  GG  R    A RGR   +G
Sbjct: 159 PPPKRAAPSGPARSSGGGMRGRALAVRGRDGYSG 192



 Score = 28.5 bits (62), Expect = 4.3
 Identities = 36/128 (28%), Positives = 45/128 (35%), Gaps = 37/128 (28%)

Query: 41  QPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGM 100
           Q  KP A+    R  PP R++  P   RG RGGG            G  R    R GP  
Sbjct: 83  QATKP-AFESSRRGPPPPRSRGRPRFLRGTRGGG------------GGPRRSPSRGGP-- 127

Query: 101 YLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPG 160
                +D G  GY    + R + A         P  ++ GP P    P      PP    
Sbjct: 128 -----DDDG--GYTADFDLRPSRA---------PMPMKRGPPPRRVGP------PPKRAA 165

Query: 161 PVAVARQT 168
           P   AR +
Sbjct: 166 PSGPARSS 173


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 47/168 (27%), Positives = 57/168 (33%), Gaps = 24/168 (14%)

Query: 12  FLAPNQASGGP--------PTEPGCSGVDRED----PVDPVQPAKPTAYVKPMRREPPAR 59
           F  P  A+G P        P  PG  G+  +D       P  PA P           P+ 
Sbjct: 604 FPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSG 663

Query: 60  AQ--PAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQL 117
            Q  P PP   G+ G    +   G     GL+   GER  PG       + G  G QG  
Sbjct: 664 FQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPG-------ERGSPGAQGLQ 716

Query: 118 EARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVA 165
             R  P    T+    P       GP  AQ   GLQ  P   G   +A
Sbjct: 717 GPRGLPGTPGTDG---PKGASGPAGPPGAQGPPGLQGMPGERGAAGIA 761



 Score = 36.2 bits (82), Expect = 0.021
 Identities = 45/152 (29%), Positives = 53/152 (34%), Gaps = 16/152 (10%)

Query: 17  QASGGPPTEPGCSGV--DREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGG 74
           Q + G P EPG SG    R  P  P +P       KP +     R  P P   RG  G  
Sbjct: 224 QGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGE--RGPPGPQGARGFPGTP 281

Query: 75  SWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMP 134
                +G     GL  A GE   PG+        GE G  G +  R  P           
Sbjct: 282 GLPGVKGHRGYPGLDGAKGEAGAPGV-KGESGSPGENGSPGPMGPRGLPGER-------- 332

Query: 135 GIVQEGP-GPHAAQPEVGLQEPPPAPGPVAVA 165
              + GP G   A+   G   P   PGPV  A
Sbjct: 333 --GRTGPAGAAGARGNDGQPGPAGPPGPVGPA 362



 Score = 31.6 bits (70), Expect = 0.51
 Identities = 38/149 (25%), Positives = 47/149 (31%), Gaps = 13/149 (8%)

Query: 17  QASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSW 76
           Q + G P  PG  GV        +  AK  A    ++ E  +  +   P   G RG    
Sbjct: 272 QGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRG---L 328

Query: 77  RAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGI 136
              RGR   AG   A G    PG            G  G +     P F     A     
Sbjct: 329 PGERGRTGPAGAAGARGNDGQPG----------PAGPPGPVGPAGGPGFPGAPGAKGEAG 378

Query: 137 VQEGPGPHAAQPEVGLQEPPPAPGPVAVA 165
                GP  AQ   G    P +PGP   +
Sbjct: 379 PTGARGPEGAQGPRGEPGTPGSPGPAGAS 407



 Score = 31.6 bits (70), Expect = 0.51
 Identities = 37/157 (23%), Positives = 52/157 (33%), Gaps = 4/157 (2%)

Query: 4   PRHSKRPRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPA 63
           P  ++ P      +   G P  PG +G       D +  AK +A    +   P       
Sbjct: 379 PTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRG 438

Query: 64  PPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTP 123
           PP  +G  G    +   G    AG     G +  PG         G  G +G+  AR  P
Sbjct: 439 PPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGP-AGPQGAPGPAGEEGKRGARGEP 497

Query: 124 AFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPG 160
                   + P   +  PG      + GL  P  APG
Sbjct: 498 G---GVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPG 531



 Score = 31.2 bits (69), Expect = 0.67
 Identities = 44/165 (26%), Positives = 52/165 (31%), Gaps = 27/165 (16%)

Query: 10  PRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRG 69
           P  LA      GP  + G  G D +D V P  P  P         + PA  Q  P   RG
Sbjct: 90  PTDLATASGQPGPKGQKGEPG-DIKDIVGPKGPPGP---------QGPAGEQ-GPRGDRG 138

Query: 70  QRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTE 129
            +G       RGR    G     G    PG         G  G  G   A+    F    
Sbjct: 139 DKGEKGAPGPRGRDGEPGTPGNPGPPGPPG-------PPGPPGLGGNFAAQMAGGFDEKA 191

Query: 130 AALMPGIVQEG---------PGPHAAQPEVGLQEPPPAPGPVAVA 165
                G++Q           PGP  A    G Q  P  PG   V+
Sbjct: 192 GGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVS 236



 Score = 31.2 bits (69), Expect = 0.67
 Identities = 41/147 (27%), Positives = 46/147 (31%), Gaps = 16/147 (10%)

Query: 21   GPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQ--PAPPAGRGQRGGGSWRA 78
            GPP  PG +G     P              PM    PA A+    P   RG +G      
Sbjct: 1071 GPPGSPGPAG-----PTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPG 1125

Query: 79   GRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPA----FSFTEAALMP 134
             RG     G     G    PG       D G  G  G    R  P          A  +P
Sbjct: 1126 ERGLKGHRGFTGLQGLPGPPGPS----GDQGASGPAGPSGPRGPPGPVGPSGKDGANGIP 1181

Query: 135  GIVQEGPGPHAAQPEVGLQEPPPAPGP 161
            G +   PGP     E G   PP  PGP
Sbjct: 1182 GPIGP-PGPRGRSGETGPAGPPGNPGP 1207



 Score = 29.3 bits (64), Expect = 2.5
 Identities = 28/100 (28%), Positives = 31/100 (31%), Gaps = 4/100 (4%)

Query: 21   GPPTEPGCSGVD-REDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAG 79
            GP  EPG  G         P  P  P     P   EP     P      G+ G    +  
Sbjct: 999  GPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAG-EPGREGSPGADGPPGRDGAAGVKGD 1057

Query: 80   RGRGSGAGLLRALGE--RVGPGMYLVHLNDHGELGYQGQL 117
            RG     G   A G     GP        D GE G QG +
Sbjct: 1058 RGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPM 1097


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 47/168 (27%), Positives = 57/168 (33%), Gaps = 24/168 (14%)

Query: 12  FLAPNQASGGP--------PTEPGCSGVDRED----PVDPVQPAKPTAYVKPMRREPPAR 59
           F  P  A+G P        P  PG  G+  +D       P  PA P           P+ 
Sbjct: 535 FPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSG 594

Query: 60  AQ--PAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQL 117
            Q  P PP   G+ G    +   G     GL+   GER  PG       + G  G QG  
Sbjct: 595 FQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPG-------ERGSPGAQGLQ 647

Query: 118 EARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVA 165
             R  P    T+    P       GP  AQ   GLQ  P   G   +A
Sbjct: 648 GPRGLPGTPGTDG---PKGASGPAGPPGAQGPPGLQGMPGERGAAGIA 692



 Score = 36.2 bits (82), Expect = 0.021
 Identities = 45/152 (29%), Positives = 53/152 (34%), Gaps = 16/152 (10%)

Query: 17  QASGGPPTEPGCSGV--DREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGG 74
           Q + G P EPG SG    R  P  P +P       KP +     R  P P   RG  G  
Sbjct: 155 QGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGE--RGPPGPQGARGFPGTP 212

Query: 75  SWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMP 134
                +G     GL  A GE   PG+        GE G  G +  R  P           
Sbjct: 213 GLPGVKGHRGYPGLDGAKGEAGAPGV-KGESGSPGENGSPGPMGPRGLPGER-------- 263

Query: 135 GIVQEGP-GPHAAQPEVGLQEPPPAPGPVAVA 165
              + GP G   A+   G   P   PGPV  A
Sbjct: 264 --GRTGPAGAAGARGNDGQPGPAGPPGPVGPA 293



 Score = 31.6 bits (70), Expect = 0.51
 Identities = 38/149 (25%), Positives = 47/149 (31%), Gaps = 13/149 (8%)

Query: 17  QASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSW 76
           Q + G P  PG  GV        +  AK  A    ++ E  +  +   P   G RG    
Sbjct: 203 QGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRG---L 259

Query: 77  RAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGI 136
              RGR   AG   A G    PG            G  G +     P F     A     
Sbjct: 260 PGERGRTGPAGAAGARGNDGQPG----------PAGPPGPVGPAGGPGFPGAPGAKGEAG 309

Query: 137 VQEGPGPHAAQPEVGLQEPPPAPGPVAVA 165
                GP  AQ   G    P +PGP   +
Sbjct: 310 PTGARGPEGAQGPRGEPGTPGSPGPAGAS 338



 Score = 31.6 bits (70), Expect = 0.51
 Identities = 37/157 (23%), Positives = 52/157 (33%), Gaps = 4/157 (2%)

Query: 4   PRHSKRPRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPA 63
           P  ++ P      +   G P  PG +G       D +  AK +A    +   P       
Sbjct: 310 PTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRG 369

Query: 64  PPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTP 123
           PP  +G  G    +   G    AG     G +  PG         G  G +G+  AR  P
Sbjct: 370 PPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGP-AGPQGAPGPAGEEGKRGARGEP 428

Query: 124 AFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPG 160
                   + P   +  PG      + GL  P  APG
Sbjct: 429 G---GVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPG 462



 Score = 31.2 bits (69), Expect = 0.67
 Identities = 41/147 (27%), Positives = 46/147 (31%), Gaps = 16/147 (10%)

Query: 21   GPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQ--PAPPAGRGQRGGGSWRA 78
            GPP  PG +G     P              PM    PA A+    P   RG +G      
Sbjct: 1002 GPPGSPGPAG-----PTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPG 1056

Query: 79   GRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPA----FSFTEAALMP 134
             RG     G     G    PG       D G  G  G    R  P          A  +P
Sbjct: 1057 ERGLKGHRGFTGLQGLPGPPGPS----GDQGASGPAGPSGPRGPPGPVGPSGKDGANGIP 1112

Query: 135  GIVQEGPGPHAAQPEVGLQEPPPAPGP 161
            G +   PGP     E G   PP  PGP
Sbjct: 1113 GPIGP-PGPRGRSGETGPAGPPGNPGP 1138



 Score = 29.3 bits (64), Expect = 2.5
 Identities = 28/100 (28%), Positives = 31/100 (31%), Gaps = 4/100 (4%)

Query: 21   GPPTEPGCSGVD-REDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAG 79
            GP  EPG  G         P  P  P     P   EP     P      G+ G    +  
Sbjct: 930  GPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAG-EPGREGSPGADGPPGRDGAAGVKGD 988

Query: 80   RGRGSGAGLLRALGE--RVGPGMYLVHLNDHGELGYQGQL 117
            RG     G   A G     GP        D GE G QG +
Sbjct: 989  RGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPM 1028



 Score = 28.9 bits (63), Expect = 3.3
 Identities = 41/154 (26%), Positives = 49/154 (31%), Gaps = 27/154 (17%)

Query: 21  GPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGR 80
           GP  + G  G D +D V P  P  P         + PA  Q  P   RG +G       R
Sbjct: 32  GPKGQKGEPG-DIKDIVGPKGPPGP---------QGPAGEQ-GPRGDRGDKGEKGAPGPR 80

Query: 81  GRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIVQEG 140
           GR    G     G    PG         G  G  G   A+    F         G++Q  
Sbjct: 81  GRDGEPGTPGNPGPPGPPG-------PPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGP 133

Query: 141 ---------PGPHAAQPEVGLQEPPPAPGPVAVA 165
                    PGP  A    G Q  P  PG   V+
Sbjct: 134 MGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVS 167


>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
          Length = 2944

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 48/170 (28%), Positives = 61/170 (35%), Gaps = 28/170 (16%)

Query: 16   NQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGS 75
            ++ S G P  PG  G     PV P     PT          P +A    P  +G++G   
Sbjct: 2270 DRGSPGVPGSPGLPG-----PVGPKGEPGPTG--------APGQAVVGLPGAKGEKGAPG 2316

Query: 76   WRAGR-----GRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEA 130
              AG      G     GL    GE+   G       + G+ G  GQ  A     F     
Sbjct: 2317 GLAGDLVGEPGAKGDRGLPGPRGEKGEAG----RAGEPGDPGEDGQKGAPGPKGFKGDPG 2372

Query: 131  ALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQT-----MLAPSPS 175
              +PG     PGP   + ++GL   P APG V    QT     M  P PS
Sbjct: 2373 VGVPGSPGP-PGPPGVKGDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGPS 2421



 Score = 29.6 bits (65), Expect = 1.9
 Identities = 51/188 (27%), Positives = 66/188 (35%), Gaps = 46/188 (24%)

Query: 11   RFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARA----QPAPPA 66
            R L  ++   GP   PG +  +R  P       +P    KP     P RA    +   P 
Sbjct: 2002 RGLKGDRGDPGPQGPPGLALGERGPPGPSGLAGEPG---KPGIPGLPGRAGGVGEAGRPG 2058

Query: 67   GRGQRGGGSWRAGRGRGSGAGLLRALG-----------ERVGPGMYLVHLNDHGELGYQG 115
             RG+RG    R  +GR    GL    G           +  GPG+        GE G  G
Sbjct: 2059 ERGERGEKGERGEQGRDGPPGLPGTPGPPGPPGPKVSVDEPGPGL-------SGEQGPPG 2111

Query: 116  QLEARQTPAFSFTEAAL----MPGIVQE--GPGPHA-------------AQPE--VGLQE 154
               A+  P  +  +       +PGI  +   PGP               A PE   GLQ 
Sbjct: 2112 LKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQG 2171

Query: 155  PPPAPGPV 162
            P   PGPV
Sbjct: 2172 PRGPPGPV 2179


>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
          Length = 2285

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 46/177 (25%), Positives = 65/177 (36%), Gaps = 26/177 (14%)

Query: 17  QASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREP-----PARAQPAPPAGRGQR 71
           Q S   P  PG SG   +      QP+ P   +  MR +P     P   Q  PP+G  Q 
Sbjct: 355 QRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQG 414

Query: 72  GG------GSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAF 125
            G      GS    R   +  G  ++    +G   Y   +  +G+ G  G  +  QTP +
Sbjct: 415 HGYPGQPYGSQTPQRYPMTMQGRAQS---AMGGLSYTQQIPPYGQQGPSGYGQQGQTPYY 471

Query: 126 SFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSPSL-SFRPP 181
           +           Q+ P P   QP    Q P   P      +Q   +  P L S +PP
Sbjct: 472 N-----------QQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPP 517



 Score = 31.6 bits (70), Expect = 0.51
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 17/68 (25%)

Query: 14   APNQASGGPPTEPGCSGVDREDPVDPVQ-----------------PAKPTAYVKPMRREP 56
            A  Q++G  P  P   GV+R D +                     P  P+A V PM R P
Sbjct: 1509 ANRQSTGSAPQGPAYHGVNRTDEMLHTDQRANHEGSWPSHGTRQPPYGPSAPVPPMTRPP 1568

Query: 57   PARAQPAP 64
            P+  QP P
Sbjct: 1569 PSNYQPPP 1576



 Score = 28.1 bits (61), Expect = 5.6
 Identities = 35/135 (25%), Positives = 49/135 (36%), Gaps = 18/135 (13%)

Query: 55  EPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQ 114
           E PA   P P     Q G  S   G G G+G+G         GPG      N +G  G +
Sbjct: 59  EGPAVGPPQPLGKELQDGAESNGGGGGGGAGSG--------GGPGAEPDLKNSNGNAGPR 110

Query: 115 GQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPG---PVAVARQTMLA 171
             L    T            G+   G  PH+A   +    PPPA G   P   +   + A
Sbjct: 111 PALNNNLTEPPGGGGGGSSDGV---GAPPHSAAAAL----PPPAYGFGQPYGRSPSAVAA 163

Query: 172 PSPSLSFRPPGGSST 186
            + ++  +  GG  +
Sbjct: 164 AAAAVFHQQHGGQQS 178


>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
          Length = 2068

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 46/177 (25%), Positives = 65/177 (36%), Gaps = 26/177 (14%)

Query: 17  QASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREP-----PARAQPAPPAGRGQR 71
           Q S   P  PG SG   +      QP+ P   +  MR +P     P   Q  PP+G  Q 
Sbjct: 355 QRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQG 414

Query: 72  GG------GSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAF 125
            G      GS    R   +  G  ++    +G   Y   +  +G+ G  G  +  QTP +
Sbjct: 415 HGYPGQPYGSQTPQRYPMTMQGRAQS---AMGGLSYTQQIPPYGQQGPSGYGQQGQTPYY 471

Query: 126 SFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSPSL-SFRPP 181
           +           Q+ P P   QP    Q P   P      +Q   +  P L S +PP
Sbjct: 472 N-----------QQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPP 517



 Score = 28.1 bits (61), Expect = 5.6
 Identities = 35/135 (25%), Positives = 49/135 (36%), Gaps = 18/135 (13%)

Query: 55  EPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQ 114
           E PA   P P     Q G  S   G G G+G+G         GPG      N +G  G +
Sbjct: 59  EGPAVGPPQPLGKELQDGAESNGGGGGGGAGSG--------GGPGAEPDLKNSNGNAGPR 110

Query: 115 GQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPG---PVAVARQTMLA 171
             L    T            G+   G  PH+A   +    PPPA G   P   +   + A
Sbjct: 111 PALNNNLTEPPGGGGGGSSDGV---GAPPHSAAAAL----PPPAYGFGQPYGRSPSAVAA 163

Query: 172 PSPSLSFRPPGGSST 186
            + ++  +  GG  +
Sbjct: 164 AAAAVFHQQHGGQQS 178


>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
           sapiens]
          Length = 678

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 50/162 (30%), Positives = 61/162 (37%), Gaps = 29/162 (17%)

Query: 22  PPTEPGCSGV-DREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGR 80
           PP  P   G  +R  P  P  P  P        R PPA   P+PPA  G RGGG+    R
Sbjct: 81  PPAAPRRRGSPERARPPPPPPPPAPP-------RPPPAA--PSPPAAPGPRGGGASPGAR 131

Query: 81  ------GRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMP 134
                   GS +  +   G   G G  L+  N H         E R  PA     A   P
Sbjct: 132 RSDFLQKTGSNSFTVHPRGLHRGAGARLLS-NGH------SAPEPRAGPANRL--AGSPP 182

Query: 135 GIVQEGPGPHAAQPEVGLQEPPPAPG-PVAVARQTMLAPSPS 175
           G  Q  P   +  P +    PPP+PG P A       + +PS
Sbjct: 183 GSGQWKPKVESGDPSL---HPPPSPGTPSATPASPPASATPS 221



 Score = 30.0 bits (66), Expect = 1.5
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 143 PHAAQPEVGLQE---PPPAPGPVAVARQTMLAPSPSLSFRPPGGSST 186
           P AA    G  E   PPP P P A  R    APSP  +  P GG ++
Sbjct: 81  PPAAPRRRGSPERARPPPPPPPPAPPRPPPAAPSPPAAPGPRGGGAS 127


>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
           sapiens]
          Length = 650

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 50/162 (30%), Positives = 61/162 (37%), Gaps = 29/162 (17%)

Query: 22  PPTEPGCSGV-DREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGR 80
           PP  P   G  +R  P  P  P  P        R PPA   P+PPA  G RGGG+    R
Sbjct: 81  PPAAPRRRGSPERARPPPPPPPPAPP-------RPPPAA--PSPPAAPGPRGGGASPGAR 131

Query: 81  ------GRGSGAGLLRALGERVGPGMYLVHLNDHGELGYQGQLEARQTPAFSFTEAALMP 134
                   GS +  +   G   G G  L+  N H         E R  PA     A   P
Sbjct: 132 RSDFLQKTGSNSFTVHPRGLHRGAGARLLS-NGH------SAPEPRAGPANRL--AGSPP 182

Query: 135 GIVQEGPGPHAAQPEVGLQEPPPAPG-PVAVARQTMLAPSPS 175
           G  Q  P   +  P +    PPP+PG P A       + +PS
Sbjct: 183 GSGQWKPKVESGDPSL---HPPPSPGTPSATPASPPASATPS 221



 Score = 30.0 bits (66), Expect = 1.5
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 143 PHAAQPEVGLQE---PPPAPGPVAVARQTMLAPSPSLSFRPPGGSST 186
           P AA    G  E   PPP P P A  R    APSP  +  P GG ++
Sbjct: 81  PPAAPRRRGSPERARPPPPPPPPAPPRPPPAAPSPPAAPGPRGGGAS 127


>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
          Length = 1073

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 10  PRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRG 69
           P FL P     GPP EPG  GV  ++ V P +P +P    K  R +P  +    PP G+G
Sbjct: 806 PGFLGPR----GPPGEPGEKGVPGKEGV-PGKPGEPG--FKGERGDPGIKGDKGPPGGKG 858

Query: 70  QRGGGSWRAGRGRGSGAGLLRALGER--VGP 98
           Q G       +G     G     GE   VGP
Sbjct: 859 QPGDPGIPGHKGHTGLMGPQGLPGENGPVGP 889



 Score = 35.8 bits (81), Expect = 0.027
 Identities = 51/186 (27%), Positives = 69/186 (37%), Gaps = 35/186 (18%)

Query: 21   GPPTEPGCSGVDREDP---------VDPVQPAKPTAYVKPMRREPPA-----RAQPAPPA 66
            GPP +PG  G+  E P          + +     T     + + PPA     + +P PP 
Sbjct: 891  GPPGQPGFPGLRGESPSMETLRRLIQEELGKQLETRLAYLLAQMPPAYMKSSQGRPGPPG 950

Query: 67   GRGQRG--------GGSWRAGRGRGSG-AGLLRALGERVG---PGMYLVHLNDHGELGYQ 114
              G+ G        G   R G+G   G +G +   GER     PG   V L   GE+G  
Sbjct: 951  PPGKDGLPGRAGPMGEPGRPGQGGLEGPSGPIGPKGERGAKGDPGAPGVGL--RGEMGPP 1008

Query: 115  GQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSP 174
            G       P ++      +PGI    PGP       G    P  PGP      +  A   
Sbjct: 1009 GIPGQPGEPGYAKDG---LPGI----PGPQGETGPAGHPGLPGPPGPPGQCDPSQCAYFA 1061

Query: 175  SLSFRP 180
            SL+ RP
Sbjct: 1062 SLAARP 1067



 Score = 30.4 bits (67), Expect = 1.1
 Identities = 39/148 (26%), Positives = 50/148 (33%), Gaps = 15/148 (10%)

Query: 23  PTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGRGR 82
           P  PG  G   E   DP  P +P    +P    P  +    PP  +GQ G        G 
Sbjct: 343 PRMPGEQGPKGEKG-DPGLPGEPGLQGRPGELGP--QGPTGPPGAKGQEGAHGAPGAAGN 399

Query: 83  GSGAGLLRALGERVGPGMYLV--------HLNDHGELGYQGQLEARQTPAFSFTEAALMP 134
               G + A G    PG               + GE G  G+ E    P     +    P
Sbjct: 400 PGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAGE-EGSPGPVGPRGDPG-AP 457

Query: 135 GIVQEGPGPHAAQPEVGLQEPPPAPGPV 162
           G+   GP       E GL+  P  PGP+
Sbjct: 458 GL--PGPPGKGKDGEPGLRGSPGLPGPL 483


>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 237

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 47/176 (26%), Positives = 66/176 (37%), Gaps = 31/176 (17%)

Query: 4   PRHSKRPRFLAPNQASGGPPTEPG---CSGVDREDPVDPVQPAKPTAYVKPMRREPPARA 60
           PR +++     P +A+ GPP  P      GV+     +  QP +P       RR PPA  
Sbjct: 72  PRENRKRA--VPARAARGPPKRPAGGQTGGVEAASGEERSQPRRP-------RRPPPAPR 122

Query: 61  QPAPPAGR------------GQRGGGSWRAGRGRGSG--AGLLRALGERVGPGMYLVHLN 106
           +P P  GR             ++GG S R G   GSG   G    +G        L    
Sbjct: 123 RPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTTFP 182

Query: 107 DHGELGYQGQLE----ARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPA 158
                G+ G+ E     R+ P+   +         +  P   AA P  G + PPPA
Sbjct: 183 GSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAA-PRAGPEAPPPA 237


>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 237

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 47/176 (26%), Positives = 66/176 (37%), Gaps = 31/176 (17%)

Query: 4   PRHSKRPRFLAPNQASGGPPTEPG---CSGVDREDPVDPVQPAKPTAYVKPMRREPPARA 60
           PR +++     P +A+ GPP  P      GV+     +  QP +P       RR PPA  
Sbjct: 72  PRENRKRA--VPARAARGPPKRPAGGQTGGVEAASGEERSQPRRP-------RRPPPAPR 122

Query: 61  QPAPPAGR------------GQRGGGSWRAGRGRGSG--AGLLRALGERVGPGMYLVHLN 106
           +P P  GR             ++GG S R G   GSG   G    +G        L    
Sbjct: 123 RPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTTFP 182

Query: 107 DHGELGYQGQLE----ARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPA 158
                G+ G+ E     R+ P+   +         +  P   AA P  G + PPPA
Sbjct: 183 GSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAA-PRAGPEAPPPA 237


>gi|77681565 NG5 protein [Homo sapiens]
          Length = 306

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 46/157 (29%), Positives = 63/157 (40%), Gaps = 15/157 (9%)

Query: 10  PRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRG 69
           P    P  A+G PP  PGC+ + R  P DP    + T +  P+   PPA A P PPA   
Sbjct: 85  PHHAPPGPAAGAPP--PGCATLPRMPP-DPY--LQETRFEGPLPPPPPAAAAPPPPAPAQ 139

Query: 70  QRGGGSWRAGRGRGSGAGLLRALGERVGPG--MYLVHLNDHGELGYQGQLEARQTPAFSF 127
                 +      G+   L   LG  V PG  + L     +  +   G   A  TP  + 
Sbjct: 140 TAQAPGFVVPTHAGTVGTL--PLGGYVAPGYPLQLQPCTAYVPVYPVGTPYAGGTPGGTG 197

Query: 128 TEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAV 164
             + L P    +GPG    +P    + PP    P+AV
Sbjct: 198 VTSTLPP--PPQGPGLALLEP----RRPPHDYMPIAV 228


>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
          Length = 1626

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 10   PRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRG 69
            P FL P     GPP EPG  GV  ++ V P +P +P    K  R +P  +    PP G+G
Sbjct: 1359 PGFLGPR----GPPGEPGEKGVPGKEGV-PGKPGEPG--FKGERGDPGIKGDKGPPGGKG 1411

Query: 70   QRGGGSWRAGRGRGSGAGLLRALGER--VGP 98
            Q G       +G     G     GE   VGP
Sbjct: 1412 QPGDPGIPGHKGHTGLMGPQGLPGENGPVGP 1442



 Score = 35.8 bits (81), Expect = 0.027
 Identities = 51/186 (27%), Positives = 69/186 (37%), Gaps = 35/186 (18%)

Query: 21   GPPTEPGCSGVDREDP---------VDPVQPAKPTAYVKPMRREPPA-----RAQPAPPA 66
            GPP +PG  G+  E P          + +     T     + + PPA     + +P PP 
Sbjct: 1444 GPPGQPGFPGLRGESPSMETLRRLIQEELGKQLETRLAYLLAQMPPAYMKSSQGRPGPPG 1503

Query: 67   GRGQRG--------GGSWRAGRGRGSG-AGLLRALGERVG---PGMYLVHLNDHGELGYQ 114
              G+ G        G   R G+G   G +G +   GER     PG   V L   GE+G  
Sbjct: 1504 PPGKDGLPGRAGPMGEPGRPGQGGLEGPSGPIGPKGERGAKGDPGAPGVGL--RGEMGPP 1561

Query: 115  GQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQTMLAPSP 174
            G       P ++      +PGI    PGP       G    P  PGP      +  A   
Sbjct: 1562 GIPGQPGEPGYAKDG---LPGI----PGPQGETGPAGHPGLPGPPGPPGQCDPSQCAYFA 1614

Query: 175  SLSFRP 180
            SL+ RP
Sbjct: 1615 SLAARP 1620



 Score = 30.4 bits (67), Expect = 1.1
 Identities = 39/148 (26%), Positives = 50/148 (33%), Gaps = 15/148 (10%)

Query: 23   PTEPGCSGVDREDPVDPVQPAKPTAYVKPMRREPPARAQPAPPAGRGQRGGGSWRAGRGR 82
            P  PG  G   E   DP  P +P    +P    P  +    PP  +GQ G        G 
Sbjct: 861  PRMPGEQGPKGEKG-DPGLPGEPGLQGRPGELGP--QGPTGPPGAKGQEGAHGAPGAAGN 917

Query: 83   GSGAGLLRALGERVGPGMYLV--------HLNDHGELGYQGQLEARQTPAFSFTEAALMP 134
                G + A G    PG               + GE G  G+ E    P     +    P
Sbjct: 918  PGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAGE-EGSPGPVGPRGDPG-AP 975

Query: 135  GIVQEGPGPHAAQPEVGLQEPPPAPGPV 162
            G+   GP       E GL+  P  PGP+
Sbjct: 976  GL--PGPPGKGKDGEPGLRGSPGLPGPL 1001



 Score = 27.3 bits (59), Expect = 9.6
 Identities = 32/113 (28%), Positives = 38/113 (33%), Gaps = 10/113 (8%)

Query: 50  KPMRREPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYLVHLNDHG 109
           K MR EP    +P  P   G RG        G     G     GER   G         G
Sbjct: 547 KGMRGEPGELGEPGLPGEVGMRGPQGPPGLPGPPGRVGAPGLQGERGEKGT-------RG 599

Query: 110 ELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPV 162
           E G +G       P  +  +    P  V    GP   + +VG   PP  PG V
Sbjct: 600 EKGERGLDGFPGKPGDTGQQGRPGPSGVA---GPQGEKGDVGPAGPPGVPGSV 649


>gi|4559408 colony stimulating factor 2 receptor, beta precursor
           [Homo sapiens]
          Length = 897

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 55/216 (25%), Positives = 77/216 (35%), Gaps = 49/216 (22%)

Query: 1   MEEPRHSKRPRFLAPNQASGGPPTEPGCSGVDREDPVDPVQPAKPTA------------- 47
           +E+P+H   P          GP T P  S +  E P  P QP  P A             
Sbjct: 539 IEDPKHVCDP--------PSGPDTTPAASDLPTEQPPSP-QPGPPAASHTPEKQASSFDF 589

Query: 48  ---YVKP--MRREPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPGMYL 102
              Y+ P   R  P    QP PP    Q GG        +    G L  L    G  + L
Sbjct: 590 NGPYLGPPHSRSLPDILGQPEPP----QEGGSQ------KSPPPGSLEYLCLPAGGQVQL 639

Query: 103 VHLNDHGELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPV 162
           V L      G   ++E R +   + + +    G    GP P A  P VG Q+   +P  +
Sbjct: 640 VPLAQAMGPGQAVEVERRPSQGAAGSPSLESGG----GPAPPALGPRVGGQDQKDSPVAI 695

Query: 163 AVARQTMLAP--------SPSLSFRPPGGSSTLRIV 190
            ++      P        S  L F P  G+S++ +V
Sbjct: 696 PMSSGDTEDPGVASGYVSSADLVFTPNSGASSVSLV 731


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.134    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,420,434
Number of Sequences: 37866
Number of extensions: 860848
Number of successful extensions: 8473
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 700
Number of HSP's that attempted gapping in prelim test: 6075
Number of HSP's gapped (non-prelim): 2749
length of query: 210
length of database: 18,247,518
effective HSP length: 98
effective length of query: 112
effective length of database: 14,536,650
effective search space: 1628104800
effective search space used: 1628104800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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