Guide to the Human Genome
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Search of human proteins with 169161779

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169161779 PREDICTED: similar to nucleophosmin 1 [Homo
sapiens]
         (186 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169161779 PREDICTED: similar to nucleophosmin 1 [Homo sapiens]     375   e-104
gi|169161624 PREDICTED: similar to nucleophosmin 1 [Homo sapiens]     375   e-104
gi|169162829 PREDICTED: similar to nucleophosmin 1 [Homo sapiens]     375   e-104
gi|83641870 nucleophosmin 1 isoform 3 [Homo sapiens]                  355   2e-98
gi|10835063 nucleophosmin 1 isoform 1 [Homo sapiens]                  355   2e-98
gi|40353734 nucleophosmin 1 isoform 2 [Homo sapiens]                  352   1e-97
gi|6857818 nucleophosmin/nucleoplasmin 3 [Homo sapiens]               100   7e-22
gi|33391150 nucleoplasmin 2 [Homo sapiens]                             77   1e-14
gi|55956788 nucleolin [Homo sapiens]                                   56   2e-08
gi|115529449 upstream binding transcription factor, RNA polymera...    48   4e-06
gi|115529451 upstream binding transcription factor, RNA polymera...    48   4e-06
gi|7657671 upstream binding transcription factor, RNA polymerase...    48   4e-06
gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens]      45   3e-05
gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens]    45   4e-05
gi|153791492 eukaryotic translation initiation factor 3, subunit...    45   5e-05
gi|83700233 eukaryotic translation initiation factor 3, subunit ...    45   5e-05
gi|4503525 eukaryotic translation initiation factor 3, subunit C...    45   5e-05
gi|37595539 ring finger protein 34 isoform 1 [Homo sapiens]            42   3e-04
gi|37595537 ring finger protein 34 isoform 2 [Homo sapiens]            42   3e-04
gi|41350214 asporin [Homo sapiens]                                     42   4e-04
gi|21735415 centromere protein B [Homo sapiens]                        41   5e-04
gi|4504487 histidine rich calcium binding protein precursor [Hom...    41   7e-04
gi|19924161 RPB5-mediating protein isoform b [Homo sapiens]            40   9e-04
gi|19924159 RPB5-mediating protein isoform a [Homo sapiens]            40   9e-04
gi|86262149 zinc finger and BTB domain containing 7C [Homo sapiens]    40   0.001
gi|239750268 PREDICTED: hypothetical protein [Homo sapiens]            40   0.002
gi|239744576 PREDICTED: hypothetical protein XP_002343198 [Homo ...    40   0.002
gi|110347463 human immunodeficiency virus type I enhancer bindin...    40   0.002
gi|42740903 MTERF domain containing 2 [Homo sapiens]                   39   0.002
gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]            39   0.002

>gi|169161779 PREDICTED: similar to nucleophosmin 1 [Homo sapiens]
          Length = 186

 Score =  375 bits (963), Expect = e-104
 Identities = 186/186 (100%), Positives = 186/186 (100%)

Query: 1   MDMDMSPLRPQNYLFGCELKADKDDHFKVDNDENEHQLSLRTVSLGAGTKDELHIVEAEA 60
           MDMDMSPLRPQNYLFGCELKADKDDHFKVDNDENEHQLSLRTVSLGAGTKDELHIVEAEA
Sbjct: 1   MDMDMSPLRPQNYLFGCELKADKDDHFKVDNDENEHQLSLRTVSLGAGTKDELHIVEAEA 60

Query: 61  MNYKGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISGQHLVAVEEDAE 120
           MNYKGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISGQHLVAVEEDAE
Sbjct: 61  MNYKGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISGQHLVAVEEDAE 120

Query: 121 SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEKV 180
           SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEKV
Sbjct: 121 SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEKV 180

Query: 181 PVKKSI 186
           PVKKSI
Sbjct: 181 PVKKSI 186


>gi|169161624 PREDICTED: similar to nucleophosmin 1 [Homo sapiens]
          Length = 186

 Score =  375 bits (963), Expect = e-104
 Identities = 186/186 (100%), Positives = 186/186 (100%)

Query: 1   MDMDMSPLRPQNYLFGCELKADKDDHFKVDNDENEHQLSLRTVSLGAGTKDELHIVEAEA 60
           MDMDMSPLRPQNYLFGCELKADKDDHFKVDNDENEHQLSLRTVSLGAGTKDELHIVEAEA
Sbjct: 1   MDMDMSPLRPQNYLFGCELKADKDDHFKVDNDENEHQLSLRTVSLGAGTKDELHIVEAEA 60

Query: 61  MNYKGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISGQHLVAVEEDAE 120
           MNYKGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISGQHLVAVEEDAE
Sbjct: 61  MNYKGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISGQHLVAVEEDAE 120

Query: 121 SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEKV 180
           SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEKV
Sbjct: 121 SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEKV 180

Query: 181 PVKKSI 186
           PVKKSI
Sbjct: 181 PVKKSI 186


>gi|169162829 PREDICTED: similar to nucleophosmin 1 [Homo sapiens]
          Length = 186

 Score =  375 bits (963), Expect = e-104
 Identities = 186/186 (100%), Positives = 186/186 (100%)

Query: 1   MDMDMSPLRPQNYLFGCELKADKDDHFKVDNDENEHQLSLRTVSLGAGTKDELHIVEAEA 60
           MDMDMSPLRPQNYLFGCELKADKDDHFKVDNDENEHQLSLRTVSLGAGTKDELHIVEAEA
Sbjct: 1   MDMDMSPLRPQNYLFGCELKADKDDHFKVDNDENEHQLSLRTVSLGAGTKDELHIVEAEA 60

Query: 61  MNYKGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISGQHLVAVEEDAE 120
           MNYKGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISGQHLVAVEEDAE
Sbjct: 61  MNYKGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISGQHLVAVEEDAE 120

Query: 121 SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEKV 180
           SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEKV
Sbjct: 121 SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEKV 180

Query: 181 PVKKSI 186
           PVKKSI
Sbjct: 181 PVKKSI 186


>gi|83641870 nucleophosmin 1 isoform 3 [Homo sapiens]
          Length = 259

 Score =  355 bits (910), Expect = 2e-98
 Identities = 179/192 (93%), Positives = 180/192 (93%), Gaps = 6/192 (3%)

Query: 1   MDMDMSPLRPQNYLFGCELKADKDDHFKVDNDENEHQLSLRTVSLGAGTKDELHIVEAEA 60
           MDMDMSPLRPQNYLFGCELKADKD HFKVDNDENEHQLSLRTVSLGAG KDELHIVEAEA
Sbjct: 5   MDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIVEAEA 64

Query: 61  MNYKGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISGQHLVAVEEDAE 120
           MNY+GSPIKVTLATLKMS QPTVSLGGFEITPPVVLR KCGSGPVHISGQHLVAVEEDAE
Sbjct: 65  MNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVEEDAE 124

Query: 121 SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDD------DDDDDDFDDE 174
           SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLA DEDDDDDD      DDDDDDFDDE
Sbjct: 125 SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDDFDDE 184

Query: 175 EAEEKVPVKKSI 186
           EAEEK PVKKSI
Sbjct: 185 EAEEKAPVKKSI 196


>gi|10835063 nucleophosmin 1 isoform 1 [Homo sapiens]
          Length = 294

 Score =  355 bits (910), Expect = 2e-98
 Identities = 179/192 (93%), Positives = 180/192 (93%), Gaps = 6/192 (3%)

Query: 1   MDMDMSPLRPQNYLFGCELKADKDDHFKVDNDENEHQLSLRTVSLGAGTKDELHIVEAEA 60
           MDMDMSPLRPQNYLFGCELKADKD HFKVDNDENEHQLSLRTVSLGAG KDELHIVEAEA
Sbjct: 5   MDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIVEAEA 64

Query: 61  MNYKGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISGQHLVAVEEDAE 120
           MNY+GSPIKVTLATLKMS QPTVSLGGFEITPPVVLR KCGSGPVHISGQHLVAVEEDAE
Sbjct: 65  MNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVEEDAE 124

Query: 121 SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDD------DDDDDDFDDE 174
           SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLA DEDDDDDD      DDDDDDFDDE
Sbjct: 125 SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDDFDDE 184

Query: 175 EAEEKVPVKKSI 186
           EAEEK PVKKSI
Sbjct: 185 EAEEKAPVKKSI 196


>gi|40353734 nucleophosmin 1 isoform 2 [Homo sapiens]
          Length = 265

 Score =  352 bits (902), Expect = 1e-97
 Identities = 177/190 (93%), Positives = 178/190 (93%), Gaps = 6/190 (3%)

Query: 1   MDMDMSPLRPQNYLFGCELKADKDDHFKVDNDENEHQLSLRTVSLGAGTKDELHIVEAEA 60
           MDMDMSPLRPQNYLFGCELKADKD HFKVDNDENEHQLSLRTVSLGAG KDELHIVEAEA
Sbjct: 5   MDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIVEAEA 64

Query: 61  MNYKGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISGQHLVAVEEDAE 120
           MNY+GSPIKVTLATLKMS QPTVSLGGFEITPPVVLR KCGSGPVHISGQHLVAVEEDAE
Sbjct: 65  MNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVEEDAE 124

Query: 121 SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDD------DDDDDDFDDE 174
           SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLA DEDDDDDD      DDDDDDFDDE
Sbjct: 125 SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDDFDDE 184

Query: 175 EAEEKVPVKK 184
           EAEEK PVKK
Sbjct: 185 EAEEKAPVKK 194


>gi|6857818 nucleophosmin/nucleoplasmin 3 [Homo sapiens]
          Length = 178

 Score =  100 bits (249), Expect = 7e-22
 Identities = 56/139 (40%), Positives = 80/139 (57%), Gaps = 10/139 (7%)

Query: 6   SPLRPQNYLFGCELKAD-KDDHFKVDN-DENEHQLSLRTVSLGAGTKDELHIVEAEAMNY 63
           +P+   ++ FGCEL    +   FKV+  D+ EH L+L  + L  G KDE ++VE  A N+
Sbjct: 30  APVTMDSFFFGCELSGHTRSFTFKVEEEDDAEHVLALTMLCLTEGAKDECNVVEVVARNH 89

Query: 64  KGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISGQHLVAV-------- 115
               I V +A LK+S QP +SL  F++ PPV  R K GSGPV I+G+H +          
Sbjct: 90  DHQEIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSGPVRITGRHQIVTMSNDVSEE 149

Query: 116 EEDAESEDEEEEDVKLLSI 134
           E + E ED +EE+V+L  I
Sbjct: 150 ESEEEEEDSDEEEVELCPI 168


>gi|33391150 nucleoplasmin 2 [Homo sapiens]
          Length = 214

 Score = 76.6 bits (187), Expect = 1e-14
 Identities = 54/177 (30%), Positives = 86/177 (48%), Gaps = 37/177 (20%)

Query: 14  LFGCELKADKDDHFKVDNDENEH--QLSLRTVSLGAGTKDELHIVE----AEAMNYKGSP 67
           L+GCEL  ++         E +   +L L T+ LG   K+E+H VE    A   + K  P
Sbjct: 18  LWGCELSQERRTWTFRPQLEGKQSCRLLLHTICLGEKAKEEMHRVEILPPANQEDKKMQP 77

Query: 68  IKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISGQHLVAVEEDAESEDEEEE 127
             VT+A+L+ S  P VS+ G +++PPV  + + GSGPV +SGQ      +    E+EEEE
Sbjct: 78  --VTIASLQASVLPMVSMVGVQLSPPVTFQLRAGSGPVFLSGQERYEASDLTWEEEEEEE 135

Query: 128 DVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEKVPVKK 184
                                         E+++++++DD+D+  D   EE+ PVK+
Sbjct: 136 -----------------------------GEEEEEEEEDDEDEDADISLEEQSPVKQ 163


>gi|55956788 nucleolin [Homo sapiens]
          Length = 710

 Score = 55.8 bits (133), Expect = 2e-08
 Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 9/79 (11%)

Query: 116 EEDAESEDEEEEDVKLLSISGKRSA---PGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFD 172
           ++D E +D EEE ++     GK++A   P     V + + +   DED+DDDDD+DD+D D
Sbjct: 198 DDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAKNVAEDEDEEEDDEDEDDDDDEDDEDDD 257

Query: 173 D------EEAEEKVPVKKS 185
           D      EE EE+ PVK++
Sbjct: 258 DEDDEEEEEEEEEEPVKEA 276



 Score = 53.9 bits (128), Expect = 8e-08
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 7/68 (10%)

Query: 116 EEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEE 175
           EED E EDE+E++++  ++    +AP    +  +       D++DD+DDDDD++D  +EE
Sbjct: 157 EEDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDE-------DDEDDEDDDDDEEDDSEEE 209

Query: 176 AEEKVPVK 183
           A E  P K
Sbjct: 210 AMETTPAK 217



 Score = 38.1 bits (87), Expect = 0.004
 Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 131 LLSISGKRSA--PGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEE 178
           L++  GK+ A  P  G+K  +   K   DE++DDD ++D++D +DE+ +E
Sbjct: 118 LVATPGKKGAAIPAKGAKNGKNAKKEDSDEEEDDDSEEDEEDDEDEDEDE 167



 Score = 27.3 bits (59), Expect = 7.8
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 132 LSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEKV-PVKK 184
           L+ +GK          P K+V     E+D +D++  +D+ DD   EE V P KK
Sbjct: 4   LAKAGKNQGDPKKMAPPPKEV-----EEDSEDEEMSEDEEDDSSGEEVVIPQKK 52


>gi|115529449 upstream binding transcription factor, RNA polymerase
           I isoform b [Homo sapiens]
          Length = 727

 Score = 48.1 bits (113), Expect = 4e-06
 Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 7/67 (10%)

Query: 116 EEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLA---VDEDDDDDDDDDDDDFD 172
           +ED E EDEEEED +    +G  S  GG S     + +      +E+DD+D+DDD+DD +
Sbjct: 647 DEDDEDEDEEEEDDE----NGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDE 702

Query: 173 DEEAEEK 179
           DE+ E +
Sbjct: 703 DEDNESE 709



 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 116 EEDAESEDEEEEDVKLL-SISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDE 174
           E+D E ED+E+ED +     +G  S  GG S     + +    +++++DD+D+DDD DD+
Sbjct: 642 EDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDD 701

Query: 175 EAEE 178
           E E+
Sbjct: 702 EDED 705



 Score = 35.8 bits (81), Expect = 0.022
 Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 19/141 (13%)

Query: 58  AEAMNYKGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISG---QHLVA 114
           ++ M ++G P K  +   +  +Q  +S G     P      + GS    IS    +H   
Sbjct: 521 SKKMKFQGEPKKPPMNGYQKFSQELLSNGELNHLPLKERMVEIGSRWQRISQSQKEHYKK 580

Query: 115 VEEDAESEDEEEED--VKLLS----------ISGKRSAP----GGGSKVPQKKVKLAVDE 158
           + E+ + + +   D  VK LS          IS KR +     G   K  +  ++   + 
Sbjct: 581 LAEEQQKQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSMTKLRGPNPKSSRTTLQSKSES 640

Query: 159 DDDDDDDDDDDDFDDEEAEEK 179
           ++DD++D+DD+D D+EE +++
Sbjct: 641 EEDDEEDEDDEDEDEEEEDDE 661


>gi|115529451 upstream binding transcription factor, RNA polymerase
           I isoform b [Homo sapiens]
          Length = 727

 Score = 48.1 bits (113), Expect = 4e-06
 Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 7/67 (10%)

Query: 116 EEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLA---VDEDDDDDDDDDDDDFD 172
           +ED E EDEEEED +    +G  S  GG S     + +      +E+DD+D+DDD+DD +
Sbjct: 647 DEDDEDEDEEEEDDE----NGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDE 702

Query: 173 DEEAEEK 179
           DE+ E +
Sbjct: 703 DEDNESE 709



 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 116 EEDAESEDEEEEDVKLL-SISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDE 174
           E+D E ED+E+ED +     +G  S  GG S     + +    +++++DD+D+DDD DD+
Sbjct: 642 EDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDD 701

Query: 175 EAEE 178
           E E+
Sbjct: 702 EDED 705



 Score = 35.8 bits (81), Expect = 0.022
 Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 19/141 (13%)

Query: 58  AEAMNYKGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISG---QHLVA 114
           ++ M ++G P K  +   +  +Q  +S G     P      + GS    IS    +H   
Sbjct: 521 SKKMKFQGEPKKPPMNGYQKFSQELLSNGELNHLPLKERMVEIGSRWQRISQSQKEHYKK 580

Query: 115 VEEDAESEDEEEED--VKLLS----------ISGKRSAP----GGGSKVPQKKVKLAVDE 158
           + E+ + + +   D  VK LS          IS KR +     G   K  +  ++   + 
Sbjct: 581 LAEEQQKQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSMTKLRGPNPKSSRTTLQSKSES 640

Query: 159 DDDDDDDDDDDDFDDEEAEEK 179
           ++DD++D+DD+D D+EE +++
Sbjct: 641 EEDDEEDEDDEDEDEEEEDDE 661


>gi|7657671 upstream binding transcription factor, RNA polymerase I
           isoform a [Homo sapiens]
          Length = 764

 Score = 48.1 bits (113), Expect = 4e-06
 Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 7/67 (10%)

Query: 116 EEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLA---VDEDDDDDDDDDDDDFD 172
           +ED E EDEEEED +    +G  S  GG S     + +      +E+DD+D+DDD+DD +
Sbjct: 684 DEDDEDEDEEEEDDE----NGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDE 739

Query: 173 DEEAEEK 179
           DE+ E +
Sbjct: 740 DEDNESE 746



 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 116 EEDAESEDEEEEDVKLL-SISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDE 174
           E+D E ED+E+ED +     +G  S  GG S     + +    +++++DD+D+DDD DD+
Sbjct: 679 EDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDD 738

Query: 175 EAEE 178
           E E+
Sbjct: 739 EDED 742



 Score = 35.8 bits (81), Expect = 0.022
 Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 19/141 (13%)

Query: 58  AEAMNYKGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISG---QHLVA 114
           ++ M ++G P K  +   +  +Q  +S G     P      + GS    IS    +H   
Sbjct: 558 SKKMKFQGEPKKPPMNGYQKFSQELLSNGELNHLPLKERMVEIGSRWQRISQSQKEHYKK 617

Query: 115 VEEDAESEDEEEED--VKLLS----------ISGKRSAP----GGGSKVPQKKVKLAVDE 158
           + E+ + + +   D  VK LS          IS KR +     G   K  +  ++   + 
Sbjct: 618 LAEEQQKQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSMTKLRGPNPKSSRTTLQSKSES 677

Query: 159 DDDDDDDDDDDDFDDEEAEEK 179
           ++DD++D+DD+D D+EE +++
Sbjct: 678 EEDDEEDEDDEDEDEEEEDDE 698


>gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens]
          Length = 1390

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 28/64 (43%)

Query: 116 EEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEE 175
           E+D E ED+E++D                            D+DDDDDDDDD+DD D+E+
Sbjct: 254 EDDGEDEDDEDDD----------------------------DDDDDDDDDDDEDDEDEED 285

Query: 176 AEEK 179
            EE+
Sbjct: 286 GEEE 289



 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 20/65 (30%)

Query: 114 AVEEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDD 173
           +VE   E ED+E ED               G     +      D+DDDDDDDDDDDD DD
Sbjct: 241 SVESSEEGEDQEHED--------------DGEDEDDE------DDDDDDDDDDDDDDEDD 280

Query: 174 EEAEE 178
           E+ E+
Sbjct: 281 EDEED 285



 Score = 44.7 bits (104), Expect = 5e-05
 Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 3/64 (4%)

Query: 116 EEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEE 175
           ++D +  DEE  D +  S+    S+  G  +  +   +   DEDDDDDDDDDDDD D+++
Sbjct: 224 QKDIQRTDEETTDNQEGSVE---SSEEGEDQEHEDDGEDEDDEDDDDDDDDDDDDDDEDD 280

Query: 176 AEEK 179
            +E+
Sbjct: 281 EDEE 284


>gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens]
          Length = 1759

 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 16/78 (20%)

Query: 109  GQHLVAVEEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDD 168
            G    A      S+++EEE+++L                P+++ +   DEDDD+DDDD+D
Sbjct: 1662 GAAAAAAAAGESSQEDEEEELEL----------------PEEEAEDDEDEDDDEDDDDED 1705

Query: 169  DDFDDEEAEEKVPVKKSI 186
            DD DD++ + +   ++S+
Sbjct: 1706 DDEDDDDEDLRTDSEESL 1723


>gi|153791492 eukaryotic translation initiation factor 3, subunit
           C-like [Homo sapiens]
          Length = 914

 Score = 44.7 bits (104), Expect = 5e-05
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 13/74 (17%)

Query: 116 EEDAES---EDEEEEDVKLLSISGKRS-APGGGSKVPQKKVKLAVDEDDDDDDDDDDDDF 171
           EED+E    EDE+E+ V   +   K+S AP G S+   KK+    DED+D +D +DD+D+
Sbjct: 175 EEDSEGSSDEDEDEDGVSAATFLKKKSEAPSGESRKFLKKMD---DEDEDSEDSEDDEDW 231

Query: 172 D------DEEAEEK 179
           D      D ++EE+
Sbjct: 232 DTGSTSSDSDSEEE 245


>gi|83700233 eukaryotic translation initiation factor 3, subunit C
           [Homo sapiens]
          Length = 913

 Score = 44.7 bits (104), Expect = 5e-05
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 13/74 (17%)

Query: 116 EEDAES---EDEEEEDVKLLSISGKRS-APGGGSKVPQKKVKLAVDEDDDDDDDDDDDDF 171
           EED+E    EDE+E+ V   +   K+S AP G S+   KK+    DED+D +D +DD+D+
Sbjct: 175 EEDSEGSSDEDEDEDGVSAATFLKKKSEAPSGESRKFLKKMD---DEDEDSEDSEDDEDW 231

Query: 172 D------DEEAEEK 179
           D      D ++EE+
Sbjct: 232 DTGSTSSDSDSEEE 245


>gi|4503525 eukaryotic translation initiation factor 3, subunit C
           [Homo sapiens]
          Length = 913

 Score = 44.7 bits (104), Expect = 5e-05
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 13/74 (17%)

Query: 116 EEDAES---EDEEEEDVKLLSISGKRS-APGGGSKVPQKKVKLAVDEDDDDDDDDDDDDF 171
           EED+E    EDE+E+ V   +   K+S AP G S+   KK+    DED+D +D +DD+D+
Sbjct: 175 EEDSEGSSDEDEDEDGVSAATFLKKKSEAPSGESRKFLKKMD---DEDEDSEDSEDDEDW 231

Query: 172 D------DEEAEEK 179
           D      D ++EE+
Sbjct: 232 DTGSTSSDSDSEEE 245


>gi|37595539 ring finger protein 34 isoform 1 [Homo sapiens]
          Length = 373

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 134 ISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEKVP 181
           + G +++  G     Q ++  A  EDDDDDDD+DDDD ++E AE++ P
Sbjct: 199 MDGDQTSRSGVPAQVQSEITSANTEDDDDDDDEDDDD-EEENAEDRNP 245



 Score = 27.7 bits (60), Expect = 5.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 157 DEDDDDDDDDDDDDFDDEEAEEKVPVKKSI 186
           D+DD+DDDD++++  D      K  V+ S+
Sbjct: 227 DDDDEDDDDEEENAEDRNPGLSKERVRASL 256


>gi|37595537 ring finger protein 34 isoform 2 [Homo sapiens]
          Length = 372

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 134 ISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEKVP 181
           + G +++  G     Q ++  A  EDDDDDDD+DDDD ++E AE++ P
Sbjct: 198 MDGDQTSRSGVPAQVQSEITSANTEDDDDDDDEDDDD-EEENAEDRNP 244



 Score = 27.7 bits (60), Expect = 5.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 157 DEDDDDDDDDDDDDFDDEEAEEKVPVKKSI 186
           D+DD+DDDD++++  D      K  V+ S+
Sbjct: 226 DDDDEDDDDEEENAEDRNPGLSKERVRASL 255


>gi|41350214 asporin [Homo sapiens]
          Length = 380

 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 19/40 (47%), Positives = 24/40 (60%)

Query: 145 SKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEKVPVKK 184
           S +  K + L   ED DDDDDDDDDD DD+E     P ++
Sbjct: 22  SHIALKNMMLKDMEDTDDDDDDDDDDDDDDEDNSLFPTRE 61


>gi|21735415 centromere protein B [Homo sapiens]
          Length = 599

 Score = 41.2 bits (95), Expect = 5e-04
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 24/94 (25%)

Query: 113 VAVEEDAESEDEEEEDVKLLS--------ISGKRSAPGG-GSKVPQKKVKLAV------- 156
           V  E D +S++EEEED +  S          G   A G  G+   Q++ +          
Sbjct: 448 VEEEGDVDSDEEEEEDEESSSEGLEAEDWAQGVVEAGGSFGAYGAQEEAQCPTLHFLEGG 507

Query: 157 --------DEDDDDDDDDDDDDFDDEEAEEKVPV 182
                   +EDD+++DD+D+DD DDEE  ++VPV
Sbjct: 508 EDSDSDSEEEDDEEEDDEDEDDDDDEEDGDEVPV 541



 Score = 30.0 bits (66), Expect = 1.2
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 5/62 (8%)

Query: 116 EEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEE 175
           EE+ E E+EEE + +     G+     GG     +  +L  +E+ +++ D D D+ ++E+
Sbjct: 409 EEEEEEEEEEEGEGEEEEEEGEEEEEEGG-----EGEELGEEEEVEEEGDVDSDEEEEED 463

Query: 176 AE 177
            E
Sbjct: 464 EE 465



 Score = 28.9 bits (63), Expect = 2.7
 Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 116 EEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEE 175
           EE+ E E+EEEE  +     G+    G   +V +++  +  DE++++D++   +  + E+
Sbjct: 417 EEEGEGEEEEEEGEEEEEEGGEGEELGEEEEV-EEEGDVDSDEEEEEDEESSSEGLEAED 475



 Score = 28.5 bits (62), Expect = 3.5
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 3/79 (3%)

Query: 101 GSGPVHISGQHLVAVEEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDD 160
           G GP       L +  E+ E E+EEEE+ +     G+     G  +  +      + E++
Sbjct: 390 GGGPNATITTSLKSEGEEEEEEEEEEEEEE---GEGEEEEEEGEEEEEEGGEGEELGEEE 446

Query: 161 DDDDDDDDDDFDDEEAEEK 179
           + +++ D D  ++EE +E+
Sbjct: 447 EVEEEGDVDSDEEEEEDEE 465



 Score = 28.5 bits (62), Expect = 3.5
 Identities = 15/63 (23%), Positives = 31/63 (49%)

Query: 116 EEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEE 175
           EE+ E E+EE E  +      +    GG  +   ++ ++  + D D D+++++D+    E
Sbjct: 410 EEEEEEEEEEGEGEEEEEEGEEEEEEGGEGEELGEEEEVEEEGDVDSDEEEEEDEESSSE 469

Query: 176 AEE 178
             E
Sbjct: 470 GLE 472


>gi|4504487 histidine rich calcium binding protein precursor [Homo
           sapiens]
          Length = 699

 Score = 40.8 bits (94), Expect = 7e-04
 Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 11/73 (15%)

Query: 117 EDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQ-----------KKVKLAVDEDDDDDDD 165
           E+ E E+EEEE+             G GS+  +                  +EDDDDDDD
Sbjct: 193 EEEEEEEEEEEEASTEYGHQAHRHRGHGSEEDEDVSDGHHHHGPSHRHQGHEEDDDDDDD 252

Query: 166 DDDDDFDDEEAEE 178
           DDDDD DD+ + E
Sbjct: 253 DDDDDDDDDVSIE 265



 Score = 40.0 bits (92), Expect = 0.001
 Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 17/78 (21%)

Query: 117 EDAESEDEEEEDVKLLSISGK-----RSAPGGGSKV------------PQKKVKLAVDED 159
           ED E E+EEEE+ +    S +         G GS+             P  + +   ++D
Sbjct: 188 EDDEGEEEEEEEEEEEEASTEYGHQAHRHRGHGSEEDEDVSDGHHHHGPSHRHQGHEEDD 247

Query: 160 DDDDDDDDDDDFDDEEAE 177
           DDDDDDDDDDD DD   E
Sbjct: 248 DDDDDDDDDDDDDDVSIE 265



 Score = 33.1 bits (74), Expect = 0.14
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 25/83 (30%)

Query: 116 EEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDD------------- 162
           EE+ E E+EEEE          R    G  +          DED  D             
Sbjct: 193 EEEEEEEEEEEEASTEYGHQAHRHRGHGSEE----------DEDVSDGHHHHGPSHRHQG 242

Query: 163 --DDDDDDDDFDDEEAEEKVPVK 183
             +DDDDDDD DD++ ++ V ++
Sbjct: 243 HEEDDDDDDDDDDDDDDDDVSIE 265



 Score = 30.4 bits (67), Expect = 0.92
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 116 EEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEE 175
           EED ES ++ E+        G R       +     + L  +E++++D ++++++ D+E 
Sbjct: 496 EEDDESSEQGEKGTH----HGSRDQEDEEDEEEGHGLSLNQEEEEEEDKEEEEEEEDEER 551

Query: 176 AEEKVPV 182
            EE+  V
Sbjct: 552 REERAEV 558


>gi|19924161 RPB5-mediating protein isoform b [Homo sapiens]
          Length = 495

 Score = 40.4 bits (93), Expect = 9e-04
 Identities = 14/21 (66%), Positives = 19/21 (90%)

Query: 157 DEDDDDDDDDDDDDFDDEEAE 177
           D+DDDDDDDDDDD+ DD++ +
Sbjct: 259 DDDDDDDDDDDDDNIDDDDGD 279



 Score = 33.9 bits (76), Expect = 0.083
 Identities = 13/23 (56%), Positives = 18/23 (78%)

Query: 157 DEDDDDDDDDDDDDFDDEEAEEK 179
           D+DDDDDDDDD+ D DD + + +
Sbjct: 261 DDDDDDDDDDDNIDDDDGDNDHE 283



 Score = 33.5 bits (75), Expect = 0.11
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 157 DEDDDDDDDDDDDDFDDEEAEEKVPV 182
           D+DDDDDDDD+ DD D +   E + V
Sbjct: 262 DDDDDDDDDDNIDDDDGDNDHEALGV 287



 Score = 32.0 bits (71), Expect = 0.32
 Identities = 12/19 (63%), Positives = 16/19 (84%)

Query: 160 DDDDDDDDDDDFDDEEAEE 178
           DDDDDDDDDDD D+ + ++
Sbjct: 259 DDDDDDDDDDDDDNIDDDD 277



 Score = 30.4 bits (67), Expect = 0.92
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 16/79 (20%)

Query: 112 LVAVEEDAESEDEEEEDVKLLSISGKR---------------SAPGGGSKVPQKKVKLAV 156
           ++A  ED  S +EE+ED +  +++                  S P  G    Q    +  
Sbjct: 194 VIANGEDTTSSEEEKED-RNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVNG 252

Query: 157 DEDDDDDDDDDDDDFDDEE 175
                 DDDDDDDD DD++
Sbjct: 253 SSSYHSDDDDDDDDDDDDD 271


>gi|19924159 RPB5-mediating protein isoform a [Homo sapiens]
          Length = 535

 Score = 40.4 bits (93), Expect = 9e-04
 Identities = 14/21 (66%), Positives = 19/21 (90%)

Query: 157 DEDDDDDDDDDDDDFDDEEAE 177
           D+DDDDDDDDDDD+ DD++ +
Sbjct: 299 DDDDDDDDDDDDDNIDDDDGD 319



 Score = 33.9 bits (76), Expect = 0.083
 Identities = 13/23 (56%), Positives = 18/23 (78%)

Query: 157 DEDDDDDDDDDDDDFDDEEAEEK 179
           D+DDDDDDDDD+ D DD + + +
Sbjct: 301 DDDDDDDDDDDNIDDDDGDNDHE 323



 Score = 33.5 bits (75), Expect = 0.11
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 157 DEDDDDDDDDDDDDFDDEEAEEKVPV 182
           D+DDDDDDDD+ DD D +   E + V
Sbjct: 302 DDDDDDDDDDNIDDDDGDNDHEALGV 327



 Score = 32.0 bits (71), Expect = 0.32
 Identities = 12/19 (63%), Positives = 16/19 (84%)

Query: 160 DDDDDDDDDDDFDDEEAEE 178
           DDDDDDDDDDD D+ + ++
Sbjct: 299 DDDDDDDDDDDDDNIDDDD 317



 Score = 30.4 bits (67), Expect = 0.92
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 16/79 (20%)

Query: 112 LVAVEEDAESEDEEEEDVKLLSISGKR---------------SAPGGGSKVPQKKVKLAV 156
           ++A  ED  S +EE+ED +  +++                  S P  G    Q    +  
Sbjct: 234 VIANGEDTTSSEEEKED-RNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVNG 292

Query: 157 DEDDDDDDDDDDDDFDDEE 175
                 DDDDDDDD DD++
Sbjct: 293 SSSYHSDDDDDDDDDDDDD 311


>gi|86262149 zinc finger and BTB domain containing 7C [Homo sapiens]
          Length = 619

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 15/23 (65%), Positives = 21/23 (91%)

Query: 157 DEDDDDDDDDDDDDFDDEEAEEK 179
           D++DDDDD+DDDD+ D+EE EE+
Sbjct: 138 DKEDDDDDEDDDDEEDEEEEEEE 160



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 15/23 (65%), Positives = 20/23 (86%)

Query: 157 DEDDDDDDDDDDDDFDDEEAEEK 179
           D+ +DDDDD+DDDD +DEE EE+
Sbjct: 137 DDKEDDDDDEDDDDEEDEEEEEE 159



 Score = 37.7 bits (86), Expect = 0.006
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 5/39 (12%)

Query: 141 PGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEK 179
           PGG       K     ++DDDD+DDDD++D ++EE EE+
Sbjct: 129 PGGDGGEEDDK-----EDDDDDEDDDDEEDEEEEEEEEE 162



 Score = 34.3 bits (77), Expect = 0.064
 Identities = 11/22 (50%), Positives = 20/22 (90%)

Query: 157 DEDDDDDDDDDDDDFDDEEAEE 178
           D+DD+DDDD++D++ ++EE E+
Sbjct: 142 DDDDEDDDDEEDEEEEEEEEED 163



 Score = 32.0 bits (71), Expect = 0.32
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 20/60 (33%)

Query: 116 EEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEE 175
           E+D E +D++E+D                      +     +E++++DDDDD +DF D+E
Sbjct: 136 EDDKEDDDDDEDD--------------------DDEEDEEEEEEEEEDDDDDTEDFADQE 175


>gi|239750268 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1154

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 3/41 (7%)

Query: 149 QKKVKLAVDEDDDDDDDDDDDDFDDEEA---EEKVPVKKSI 186
           Q K K   D+DDDDDDDDDDDD    +     +K+ VKK +
Sbjct: 16  QVKRKKRYDDDDDDDDDDDDDDIKVRQKSSWSQKLGVKKCV 56


>gi|239744576 PREDICTED: hypothetical protein XP_002343198 [Homo
           sapiens]
          Length = 1154

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 3/41 (7%)

Query: 149 QKKVKLAVDEDDDDDDDDDDDDFDDEEA---EEKVPVKKSI 186
           Q K K   D+DDDDDDDDDDDD    +     +K+ VKK +
Sbjct: 16  QVKRKKRYDDDDDDDDDDDDDDIKVRQKSSWSQKLGVKKCV 56


>gi|110347463 human immunodeficiency virus type I enhancer binding
            protein 2 [Homo sapiens]
          Length = 2446

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 20/66 (30%), Positives = 33/66 (50%)

Query: 109  GQHLVAVEEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDD 168
            G  + +V++    E E  ED+   +     S+     +    +     D DD+DDDD+D+
Sbjct: 1859 GVSMTSVDDTETEEAENLEDLHKAAEKHSMSSISTDHQFSDAEESDGEDGDDNDDDDEDE 1918

Query: 169  DDFDDE 174
            DDFDD+
Sbjct: 1919 DDFDDQ 1924



 Score = 30.4 bits (67), Expect = 0.92
 Identities = 16/54 (29%), Positives = 26/54 (48%)

Query: 122  EDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEE 175
            +D E E+ + L    K +     S +         +E D +D DD+DDD +DE+
Sbjct: 1866 DDTETEEAENLEDLHKAAEKHSMSSISTDHQFSDAEESDGEDGDDNDDDDEDED 1919



 Score = 28.9 bits (63), Expect = 2.7
 Identities = 11/17 (64%), Positives = 13/17 (76%)

Query: 157  DEDDDDDDDDDDDDFDD 173
            D DDDD+D+DD DD  D
Sbjct: 1910 DNDDDDEDEDDFDDQGD 1926


>gi|42740903 MTERF domain containing 2 [Homo sapiens]
          Length = 381

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 7/36 (19%)

Query: 150 KKVKLAVDEDDDD-------DDDDDDDDFDDEEAEE 178
           K+  L  DEDDDD       D+D+DDDD DD+EAE+
Sbjct: 335 KRASLDEDEDDDDEEDNDEDDNDEDDDDEDDDEAED 370



 Score = 35.0 bits (79), Expect = 0.037
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 27/65 (41%)

Query: 114 AVEEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDD 173
           +++ED + +DEE+ D                            D++D+DDDD+DDD+ +D
Sbjct: 338 SLDEDEDDDDEEDNDE---------------------------DDNDEDDDDEDDDEAED 370

Query: 174 EEAEE 178
            + +E
Sbjct: 371 NDEDE 375



 Score = 34.7 bits (78), Expect = 0.049
 Identities = 12/23 (52%), Positives = 20/23 (86%)

Query: 157 DEDDDDDDDDDDDDFDDEEAEEK 179
           DEDDDD+DDD+ +D D++E +++
Sbjct: 357 DEDDDDEDDDEAEDNDEDEDDDE 379



 Score = 32.7 bits (73), Expect = 0.18
 Identities = 11/23 (47%), Positives = 20/23 (86%)

Query: 157 DEDDDDDDDDDDDDFDDEEAEEK 179
           D+DD+DDD+ +D+D D+++ EE+
Sbjct: 359 DDDDEDDDEAEDNDEDEDDDEEE 381



 Score = 31.2 bits (69), Expect = 0.54
 Identities = 13/24 (54%), Positives = 19/24 (79%), Gaps = 3/24 (12%)

Query: 157 DEDDDDDDD---DDDDDFDDEEAE 177
           ++DDD+DDD   D+D+D DD+E E
Sbjct: 358 EDDDDEDDDEAEDNDEDEDDDEEE 381


>gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]
          Length = 211

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 18/61 (29%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 119 AESEDEEEEDVKLLSISGK-RSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAE 177
           A+ +++ E+D+      GK  +A  G  K  + K K   +ED++D++D++++D +DEE +
Sbjct: 149 AKLKEKYEKDIAAYQAKGKPEAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEDEEDEEDD 208

Query: 178 E 178
           +
Sbjct: 209 D 209


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.309    0.132    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,208,566
Number of Sequences: 37866
Number of extensions: 419605
Number of successful extensions: 10572
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 189
Number of HSP's that attempted gapping in prelim test: 4205
Number of HSP's gapped (non-prelim): 3161
length of query: 186
length of database: 18,247,518
effective HSP length: 96
effective length of query: 90
effective length of database: 14,612,382
effective search space: 1315114380
effective search space used: 1315114380
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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