Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: EIF3C Sequence: fasta or formatted (913aa) NCBI GI: 83700233
Description:

eukaryotic translation initiation factor 3, subunit C

Referenced in:

Translation Factors

Other entries for this name:
alt mRNA [913aa] eukaryotic translation initiation factor 3, subunit C
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         56           2
 C cysteine            1.3         12           1
 D aspartate           6.9         63           2
 E glutamate          11.2        102           4
 F phenylalanine       2.6         24           2
 G glycine             5.0         46           2
 H histidine           2.7         25           2
 I isoleucine          5.0         46           2
 K lysine              8.3         76           3
 L leucine             9.5         87           3
 M methionine          3.1         28           1
 N asparagine          4.1         37           2
 P proline             2.8         26           2
 Q glutamine           4.9         45           3
 R arginine            6.5         59           3
 S serine              6.5         59           2
 T threonine           4.6         42           2
 V valine              4.6         42           2
 W tryptophan          0.8          7           1
 Y tyrosine            3.4         31           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   eukaryotic translation initiation factor 3, subunit ... 
EIF3C                 1.000   eukaryotic translation initiation factor 3, subunit C...
EIF3CL                0.997   eukaryotic translation initiation factor 3, subunit...
NCL                   0.027   nucleolin 
ATRX                  0.022   transcriptional regulator ATRX isoform 2 
ATRX                  0.022   transcriptional regulator ATRX isoform 1 
FAM133A               0.021   hypothetical protein LOC286499 
TOP1                  0.021   DNA topoisomerase I 
HTATSF1               0.020   HIV-1 Tat specific factor 1 
HTATSF1               0.020   HIV-1 Tat specific factor 1 
FAM133B               0.020   hypothetical protein LOC257415 isoform 2 
FAM133B               0.020   hypothetical protein LOC257415 isoform 1 
IWS1                  0.018   IWS1 homolog 
CYLC1                 0.018   cylicin, basic protein of sperm head cytoskeleton 1...
ANP32B                0.018   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
WDR87                 0.018   NYD-SP11 protein 
ATAD2                 0.017   ATPase family, AAA domain containing 2 
AP3B1                 0.017   adaptor-related protein complex 3, beta 1 subunit [H...
UBTF                  0.017   upstream binding transcription factor, RNA polymera...
UBTF                  0.017   upstream binding transcription factor, RNA polymera...
UBTF                  0.017   upstream binding transcription factor, RNA polymerase...
NSBP1                 0.017   nucleosomal binding protein 1 
KIF21A                0.017   kinesin family member 21A 
RTF1                  0.016   Paf1/RNA polymerase II complex component 
MPHOSPH10             0.016   M-phase phosphoprotein 10 
EIF5B                 0.016   eukaryotic translation initiation factor 5B 
CYLC2                 0.016   cylicin 2 
PPP1R15A              0.016   protein phosphatase 1, regulatory subunit 15A [Homo...
DEK                   0.016   DEK oncogene isoform 2 
DEK                   0.016   DEK oncogene isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press