Guide to the Human Genome
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Name: LOC100288514 Sequence: fasta or formatted (1154aa) NCBI GI: 239750268
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {1154aa} PREDICTED: hypothetical protein XP_002343198
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         60           3
 C cysteine            1.5         17           1
 D aspartate           4.4         51          14
 E glutamate           5.1         59           2
 F phenylalanine       4.5         52           2
 G glycine             4.7         54           2
 H histidine           3.4         39           2
 I isoleucine          5.7         66           2
 K lysine              4.9         56           2
 L leucine            10.3        119           2
 M methionine          2.3         27           2
 N asparagine          3.4         39           1
 P proline             6.8         78           2
 Q glutamine           4.9         57           3
 R arginine            4.1         47           2
 S serine             10.7        123           3
 T threonine           8.0         92           2
 V valine              5.8         67           2
 W tryptophan          1.4         16           1
 Y tyrosine            3.0         35           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288514          1.000   PREDICTED: hypothetical protein XP_002343198 
LOC100293889          0.992   PREDICTED: hypothetical protein 
DAG1                  0.030   dystroglycan 1 preproprotein 
LOC100134138          0.009   PREDICTED: similar to mucin, partial 
LOC440577             0.007   PREDICTED: similar to nucleophosmin 1 
LOC440577             0.007   PREDICTED: similar to nucleophosmin 1 
LOC440577             0.007   PREDICTED: similar to nucleophosmin 1 
HRC                   0.007   histidine rich calcium binding protein precursor [Hom...
C19orf2               0.006   RPB5-mediating protein isoform b 
C19orf2               0.006   RPB5-mediating protein isoform a 
ATAD2                 0.005   ATPase family, AAA domain containing 2 
TAF9                  0.005   TAF9 RNA polymerase II, TATA box binding protein-ass...
TAF9                  0.005   TAF9 RNA polymerase II, TATA box binding protein-asso...
ASPN                  0.005   asporin 
NPM1                  0.005   nucleophosmin 1 isoform 3 
NPM1                  0.005   nucleophosmin 1 isoform 1 
LOC100133408          0.005   PREDICTED: similar to mucin 
CASZ1                 0.004   castor homolog 1, zinc finger isoform a 
ZSCAN18               0.004   zinc finger and SCAN domain containing 18 isoform 2...
ZSCAN18               0.004   zinc finger and SCAN domain containing 18 isoform 3...
ZSCAN18               0.004   zinc finger and SCAN domain containing 18 isoform 3...
ZSCAN18               0.004   zinc finger and SCAN domain containing 18 isoform 1...
NPM1                  0.004   nucleophosmin 1 isoform 2 
SIX5                  0.004   sine oculis homeobox homolog 5 
EZH2                  0.003   enhancer of zeste 2 isoform b 
EZH2                  0.003   enhancer of zeste 2 isoform a 
RBM28                 0.003   RNA binding motif protein 28 
SOX11                 0.003   SRY-box 11 
MAST1                 0.003   microtubule associated serine/threonine kinase 1 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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