Guide to the Human Genome
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Name: NPM3 Sequence: fasta or formatted (178aa) NCBI GI: 6857818
Description:

nucleophosmin/nucleoplasmin 3

Referenced in:

Nucleus and Nucleolus

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         15           3
 C cysteine            2.8          5           1
 D aspartate           5.6         10           2
 E glutamate          12.4         22           5
 F phenylalanine       4.5          8           3
 G glycine             7.3         13           2
 H histidine           2.8          5           1
 I isoleucine          2.2          4           1
 K lysine              3.4          6           2
 L leucine             9.0         16           1
 M methionine          2.8          5           1
 N asparagine          2.2          4           1
 P proline             5.6         10           2
 Q glutamine           3.9          7           1
 R arginine            5.1          9           1
 S serine              7.3         13           1
 T threonine           5.6         10           1
 V valine              9.0         16           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nucleophosmin/nucleoplasmin 3 
NPM1                  0.244   nucleophosmin 1 isoform 3 
NPM1                  0.244   nucleophosmin 1 isoform 2 
NPM1                  0.244   nucleophosmin 1 isoform 1 
LOC440577             0.226   PREDICTED: similar to nucleophosmin 1 
LOC440577             0.226   PREDICTED: similar to nucleophosmin 1 
LOC440577             0.226   PREDICTED: similar to nucleophosmin 1 
NPM2                  0.202   nucleoplasmin 2 
C1orf107              0.039   digestive-organ expansion factor homolog 
MYST4                 0.033   MYST histone acetyltransferase (monocytic leukemia)...
BOD1L                 0.030   biorientation of chromosomes in cell division 1-like...
HMGB2                 0.027   high-mobility group box 2 
HMGB2                 0.027   high-mobility group box 2 
HMGB2                 0.027   high-mobility group box 2 
PELP1                 0.027   proline, glutamic acid and leucine rich protein 1 [...
SENP3                 0.027   SUMO1/sentrin/SMT3 specific protease 3 
PRDM2                 0.027   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.027   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.027   retinoblastoma protein-binding zinc finger protein i...
SETD2                 0.024   SET domain containing 2 
EHMT2                 0.024   euchromatic histone-lysine N-methyltransferase 2 is...
EHMT2                 0.024   euchromatic histone-lysine N-methyltransferase 2 is...
EIF3D                 0.024   eukaryotic translation initiation factor 3 subunit D ...
SLC24A3               0.024   solute carrier family 24 (sodium/potassium/calcium e...
PHF23                 0.021   PHD finger protein 23 
SHROOM4               0.021   shroom family member 4 
RTN4                  0.021   reticulon 4 isoform B 
RTN4                  0.021   reticulon 4 isoform D 
RTN4                  0.021   reticulon 4 isoform A 
EIF5B                 0.021   eukaryotic translation initiation factor 5B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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