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Search of human proteins with 169161624
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169161624 PREDICTED: similar to nucleophosmin 1 [Homo
sapiens]
(186 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169161779 PREDICTED: similar to nucleophosmin 1 [Homo sapiens] 375 e-104
gi|169161624 PREDICTED: similar to nucleophosmin 1 [Homo sapiens] 375 e-104
gi|169162829 PREDICTED: similar to nucleophosmin 1 [Homo sapiens] 375 e-104
gi|83641870 nucleophosmin 1 isoform 3 [Homo sapiens] 355 2e-98
gi|10835063 nucleophosmin 1 isoform 1 [Homo sapiens] 355 2e-98
gi|40353734 nucleophosmin 1 isoform 2 [Homo sapiens] 352 1e-97
gi|6857818 nucleophosmin/nucleoplasmin 3 [Homo sapiens] 100 7e-22
gi|33391150 nucleoplasmin 2 [Homo sapiens] 77 1e-14
gi|55956788 nucleolin [Homo sapiens] 56 2e-08
gi|115529449 upstream binding transcription factor, RNA polymera... 48 4e-06
gi|115529451 upstream binding transcription factor, RNA polymera... 48 4e-06
gi|7657671 upstream binding transcription factor, RNA polymerase... 48 4e-06
gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens] 45 3e-05
gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens] 45 4e-05
gi|153791492 eukaryotic translation initiation factor 3, subunit... 45 5e-05
gi|83700233 eukaryotic translation initiation factor 3, subunit ... 45 5e-05
gi|4503525 eukaryotic translation initiation factor 3, subunit C... 45 5e-05
gi|37595539 ring finger protein 34 isoform 1 [Homo sapiens] 42 3e-04
gi|37595537 ring finger protein 34 isoform 2 [Homo sapiens] 42 3e-04
gi|41350214 asporin [Homo sapiens] 42 4e-04
gi|21735415 centromere protein B [Homo sapiens] 41 5e-04
gi|4504487 histidine rich calcium binding protein precursor [Hom... 41 7e-04
gi|19924161 RPB5-mediating protein isoform b [Homo sapiens] 40 9e-04
gi|19924159 RPB5-mediating protein isoform a [Homo sapiens] 40 9e-04
gi|86262149 zinc finger and BTB domain containing 7C [Homo sapiens] 40 0.001
gi|239750268 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|239744576 PREDICTED: hypothetical protein XP_002343198 [Homo ... 40 0.002
gi|110347463 human immunodeficiency virus type I enhancer bindin... 40 0.002
gi|42740903 MTERF domain containing 2 [Homo sapiens] 39 0.002
gi|56806673 high-mobility group box 1-like 1 [Homo sapiens] 39 0.002
>gi|169161779 PREDICTED: similar to nucleophosmin 1 [Homo sapiens]
Length = 186
Score = 375 bits (963), Expect = e-104
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 1 MDMDMSPLRPQNYLFGCELKADKDDHFKVDNDENEHQLSLRTVSLGAGTKDELHIVEAEA 60
MDMDMSPLRPQNYLFGCELKADKDDHFKVDNDENEHQLSLRTVSLGAGTKDELHIVEAEA
Sbjct: 1 MDMDMSPLRPQNYLFGCELKADKDDHFKVDNDENEHQLSLRTVSLGAGTKDELHIVEAEA 60
Query: 61 MNYKGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISGQHLVAVEEDAE 120
MNYKGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISGQHLVAVEEDAE
Sbjct: 61 MNYKGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISGQHLVAVEEDAE 120
Query: 121 SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEKV 180
SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEKV
Sbjct: 121 SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEKV 180
Query: 181 PVKKSI 186
PVKKSI
Sbjct: 181 PVKKSI 186
>gi|169161624 PREDICTED: similar to nucleophosmin 1 [Homo sapiens]
Length = 186
Score = 375 bits (963), Expect = e-104
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 1 MDMDMSPLRPQNYLFGCELKADKDDHFKVDNDENEHQLSLRTVSLGAGTKDELHIVEAEA 60
MDMDMSPLRPQNYLFGCELKADKDDHFKVDNDENEHQLSLRTVSLGAGTKDELHIVEAEA
Sbjct: 1 MDMDMSPLRPQNYLFGCELKADKDDHFKVDNDENEHQLSLRTVSLGAGTKDELHIVEAEA 60
Query: 61 MNYKGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISGQHLVAVEEDAE 120
MNYKGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISGQHLVAVEEDAE
Sbjct: 61 MNYKGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISGQHLVAVEEDAE 120
Query: 121 SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEKV 180
SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEKV
Sbjct: 121 SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEKV 180
Query: 181 PVKKSI 186
PVKKSI
Sbjct: 181 PVKKSI 186
>gi|169162829 PREDICTED: similar to nucleophosmin 1 [Homo sapiens]
Length = 186
Score = 375 bits (963), Expect = e-104
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 1 MDMDMSPLRPQNYLFGCELKADKDDHFKVDNDENEHQLSLRTVSLGAGTKDELHIVEAEA 60
MDMDMSPLRPQNYLFGCELKADKDDHFKVDNDENEHQLSLRTVSLGAGTKDELHIVEAEA
Sbjct: 1 MDMDMSPLRPQNYLFGCELKADKDDHFKVDNDENEHQLSLRTVSLGAGTKDELHIVEAEA 60
Query: 61 MNYKGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISGQHLVAVEEDAE 120
MNYKGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISGQHLVAVEEDAE
Sbjct: 61 MNYKGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISGQHLVAVEEDAE 120
Query: 121 SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEKV 180
SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEKV
Sbjct: 121 SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEKV 180
Query: 181 PVKKSI 186
PVKKSI
Sbjct: 181 PVKKSI 186
>gi|83641870 nucleophosmin 1 isoform 3 [Homo sapiens]
Length = 259
Score = 355 bits (910), Expect = 2e-98
Identities = 179/192 (93%), Positives = 180/192 (93%), Gaps = 6/192 (3%)
Query: 1 MDMDMSPLRPQNYLFGCELKADKDDHFKVDNDENEHQLSLRTVSLGAGTKDELHIVEAEA 60
MDMDMSPLRPQNYLFGCELKADKD HFKVDNDENEHQLSLRTVSLGAG KDELHIVEAEA
Sbjct: 5 MDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIVEAEA 64
Query: 61 MNYKGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISGQHLVAVEEDAE 120
MNY+GSPIKVTLATLKMS QPTVSLGGFEITPPVVLR KCGSGPVHISGQHLVAVEEDAE
Sbjct: 65 MNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVEEDAE 124
Query: 121 SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDD------DDDDDDFDDE 174
SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLA DEDDDDDD DDDDDDFDDE
Sbjct: 125 SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDDFDDE 184
Query: 175 EAEEKVPVKKSI 186
EAEEK PVKKSI
Sbjct: 185 EAEEKAPVKKSI 196
>gi|10835063 nucleophosmin 1 isoform 1 [Homo sapiens]
Length = 294
Score = 355 bits (910), Expect = 2e-98
Identities = 179/192 (93%), Positives = 180/192 (93%), Gaps = 6/192 (3%)
Query: 1 MDMDMSPLRPQNYLFGCELKADKDDHFKVDNDENEHQLSLRTVSLGAGTKDELHIVEAEA 60
MDMDMSPLRPQNYLFGCELKADKD HFKVDNDENEHQLSLRTVSLGAG KDELHIVEAEA
Sbjct: 5 MDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIVEAEA 64
Query: 61 MNYKGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISGQHLVAVEEDAE 120
MNY+GSPIKVTLATLKMS QPTVSLGGFEITPPVVLR KCGSGPVHISGQHLVAVEEDAE
Sbjct: 65 MNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVEEDAE 124
Query: 121 SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDD------DDDDDDFDDE 174
SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLA DEDDDDDD DDDDDDFDDE
Sbjct: 125 SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDDFDDE 184
Query: 175 EAEEKVPVKKSI 186
EAEEK PVKKSI
Sbjct: 185 EAEEKAPVKKSI 196
>gi|40353734 nucleophosmin 1 isoform 2 [Homo sapiens]
Length = 265
Score = 352 bits (902), Expect = 1e-97
Identities = 177/190 (93%), Positives = 178/190 (93%), Gaps = 6/190 (3%)
Query: 1 MDMDMSPLRPQNYLFGCELKADKDDHFKVDNDENEHQLSLRTVSLGAGTKDELHIVEAEA 60
MDMDMSPLRPQNYLFGCELKADKD HFKVDNDENEHQLSLRTVSLGAG KDELHIVEAEA
Sbjct: 5 MDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIVEAEA 64
Query: 61 MNYKGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISGQHLVAVEEDAE 120
MNY+GSPIKVTLATLKMS QPTVSLGGFEITPPVVLR KCGSGPVHISGQHLVAVEEDAE
Sbjct: 65 MNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVEEDAE 124
Query: 121 SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDD------DDDDDDFDDE 174
SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLA DEDDDDDD DDDDDDFDDE
Sbjct: 125 SEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDDFDDE 184
Query: 175 EAEEKVPVKK 184
EAEEK PVKK
Sbjct: 185 EAEEKAPVKK 194
>gi|6857818 nucleophosmin/nucleoplasmin 3 [Homo sapiens]
Length = 178
Score = 100 bits (249), Expect = 7e-22
Identities = 56/139 (40%), Positives = 80/139 (57%), Gaps = 10/139 (7%)
Query: 6 SPLRPQNYLFGCELKAD-KDDHFKVDN-DENEHQLSLRTVSLGAGTKDELHIVEAEAMNY 63
+P+ ++ FGCEL + FKV+ D+ EH L+L + L G KDE ++VE A N+
Sbjct: 30 APVTMDSFFFGCELSGHTRSFTFKVEEEDDAEHVLALTMLCLTEGAKDECNVVEVVARNH 89
Query: 64 KGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISGQHLVAV-------- 115
I V +A LK+S QP +SL F++ PPV R K GSGPV I+G+H +
Sbjct: 90 DHQEIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSGPVRITGRHQIVTMSNDVSEE 149
Query: 116 EEDAESEDEEEEDVKLLSI 134
E + E ED +EE+V+L I
Sbjct: 150 ESEEEEEDSDEEEVELCPI 168
>gi|33391150 nucleoplasmin 2 [Homo sapiens]
Length = 214
Score = 76.6 bits (187), Expect = 1e-14
Identities = 54/177 (30%), Positives = 86/177 (48%), Gaps = 37/177 (20%)
Query: 14 LFGCELKADKDDHFKVDNDENEH--QLSLRTVSLGAGTKDELHIVE----AEAMNYKGSP 67
L+GCEL ++ E + +L L T+ LG K+E+H VE A + K P
Sbjct: 18 LWGCELSQERRTWTFRPQLEGKQSCRLLLHTICLGEKAKEEMHRVEILPPANQEDKKMQP 77
Query: 68 IKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISGQHLVAVEEDAESEDEEEE 127
VT+A+L+ S P VS+ G +++PPV + + GSGPV +SGQ + E+EEEE
Sbjct: 78 --VTIASLQASVLPMVSMVGVQLSPPVTFQLRAGSGPVFLSGQERYEASDLTWEEEEEEE 135
Query: 128 DVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEKVPVKK 184
E+++++++DD+D+ D EE+ PVK+
Sbjct: 136 -----------------------------GEEEEEEEEDDEDEDADISLEEQSPVKQ 163
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 55.8 bits (133), Expect = 2e-08
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 9/79 (11%)
Query: 116 EEDAESEDEEEEDVKLLSISGKRSA---PGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFD 172
++D E +D EEE ++ GK++A P V + + + DED+DDDDD+DD+D D
Sbjct: 198 DDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAKNVAEDEDEEEDDEDEDDDDDEDDEDDD 257
Query: 173 D------EEAEEKVPVKKS 185
D EE EE+ PVK++
Sbjct: 258 DEDDEEEEEEEEEEPVKEA 276
Score = 53.9 bits (128), Expect = 8e-08
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 7/68 (10%)
Query: 116 EEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEE 175
EED E EDE+E++++ ++ +AP + + D++DD+DDDDD++D +EE
Sbjct: 157 EEDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDE-------DDEDDEDDDDDEEDDSEEE 209
Query: 176 AEEKVPVK 183
A E P K
Sbjct: 210 AMETTPAK 217
Score = 38.1 bits (87), Expect = 0.004
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 131 LLSISGKRSA--PGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEE 178
L++ GK+ A P G+K + K DE++DDD ++D++D +DE+ +E
Sbjct: 118 LVATPGKKGAAIPAKGAKNGKNAKKEDSDEEEDDDSEEDEEDDEDEDEDE 167
Score = 27.3 bits (59), Expect = 7.8
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 132 LSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEKV-PVKK 184
L+ +GK P K+V E+D +D++ +D+ DD EE V P KK
Sbjct: 4 LAKAGKNQGDPKKMAPPPKEV-----EEDSEDEEMSEDEEDDSSGEEVVIPQKK 52
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 48.1 bits (113), Expect = 4e-06
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 7/67 (10%)
Query: 116 EEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLA---VDEDDDDDDDDDDDDFD 172
+ED E EDEEEED + +G S GG S + + +E+DD+D+DDD+DD +
Sbjct: 647 DEDDEDEDEEEEDDE----NGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDE 702
Query: 173 DEEAEEK 179
DE+ E +
Sbjct: 703 DEDNESE 709
Score = 45.8 bits (107), Expect = 2e-05
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 116 EEDAESEDEEEEDVKLL-SISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDE 174
E+D E ED+E+ED + +G S GG S + + +++++DD+D+DDD DD+
Sbjct: 642 EDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDD 701
Query: 175 EAEE 178
E E+
Sbjct: 702 EDED 705
Score = 35.8 bits (81), Expect = 0.022
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 19/141 (13%)
Query: 58 AEAMNYKGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISG---QHLVA 114
++ M ++G P K + + +Q +S G P + GS IS +H
Sbjct: 521 SKKMKFQGEPKKPPMNGYQKFSQELLSNGELNHLPLKERMVEIGSRWQRISQSQKEHYKK 580
Query: 115 VEEDAESEDEEEED--VKLLS----------ISGKRSAP----GGGSKVPQKKVKLAVDE 158
+ E+ + + + D VK LS IS KR + G K + ++ +
Sbjct: 581 LAEEQQKQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSMTKLRGPNPKSSRTTLQSKSES 640
Query: 159 DDDDDDDDDDDDFDDEEAEEK 179
++DD++D+DD+D D+EE +++
Sbjct: 641 EEDDEEDEDDEDEDEEEEDDE 661
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 48.1 bits (113), Expect = 4e-06
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 7/67 (10%)
Query: 116 EEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLA---VDEDDDDDDDDDDDDFD 172
+ED E EDEEEED + +G S GG S + + +E+DD+D+DDD+DD +
Sbjct: 647 DEDDEDEDEEEEDDE----NGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDE 702
Query: 173 DEEAEEK 179
DE+ E +
Sbjct: 703 DEDNESE 709
Score = 45.8 bits (107), Expect = 2e-05
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 116 EEDAESEDEEEEDVKLL-SISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDE 174
E+D E ED+E+ED + +G S GG S + + +++++DD+D+DDD DD+
Sbjct: 642 EDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDD 701
Query: 175 EAEE 178
E E+
Sbjct: 702 EDED 705
Score = 35.8 bits (81), Expect = 0.022
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 19/141 (13%)
Query: 58 AEAMNYKGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISG---QHLVA 114
++ M ++G P K + + +Q +S G P + GS IS +H
Sbjct: 521 SKKMKFQGEPKKPPMNGYQKFSQELLSNGELNHLPLKERMVEIGSRWQRISQSQKEHYKK 580
Query: 115 VEEDAESEDEEEED--VKLLS----------ISGKRSAP----GGGSKVPQKKVKLAVDE 158
+ E+ + + + D VK LS IS KR + G K + ++ +
Sbjct: 581 LAEEQQKQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSMTKLRGPNPKSSRTTLQSKSES 640
Query: 159 DDDDDDDDDDDDFDDEEAEEK 179
++DD++D+DD+D D+EE +++
Sbjct: 641 EEDDEEDEDDEDEDEEEEDDE 661
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 48.1 bits (113), Expect = 4e-06
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 7/67 (10%)
Query: 116 EEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLA---VDEDDDDDDDDDDDDFD 172
+ED E EDEEEED + +G S GG S + + +E+DD+D+DDD+DD +
Sbjct: 684 DEDDEDEDEEEEDDE----NGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDE 739
Query: 173 DEEAEEK 179
DE+ E +
Sbjct: 740 DEDNESE 746
Score = 45.8 bits (107), Expect = 2e-05
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 116 EEDAESEDEEEEDVKLL-SISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDE 174
E+D E ED+E+ED + +G S GG S + + +++++DD+D+DDD DD+
Sbjct: 679 EDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDD 738
Query: 175 EAEE 178
E E+
Sbjct: 739 EDED 742
Score = 35.8 bits (81), Expect = 0.022
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 19/141 (13%)
Query: 58 AEAMNYKGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISG---QHLVA 114
++ M ++G P K + + +Q +S G P + GS IS +H
Sbjct: 558 SKKMKFQGEPKKPPMNGYQKFSQELLSNGELNHLPLKERMVEIGSRWQRISQSQKEHYKK 617
Query: 115 VEEDAESEDEEEED--VKLLS----------ISGKRSAP----GGGSKVPQKKVKLAVDE 158
+ E+ + + + D VK LS IS KR + G K + ++ +
Sbjct: 618 LAEEQQKQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSMTKLRGPNPKSSRTTLQSKSES 677
Query: 159 DDDDDDDDDDDDFDDEEAEEK 179
++DD++D+DD+D D+EE +++
Sbjct: 678 EEDDEEDEDDEDEDEEEEDDE 698
>gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens]
Length = 1390
Score = 45.4 bits (106), Expect = 3e-05
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 28/64 (43%)
Query: 116 EEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEE 175
E+D E ED+E++D D+DDDDDDDDD+DD D+E+
Sbjct: 254 EDDGEDEDDEDDD----------------------------DDDDDDDDDDDEDDEDEED 285
Query: 176 AEEK 179
EE+
Sbjct: 286 GEEE 289
Score = 45.1 bits (105), Expect = 4e-05
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 20/65 (30%)
Query: 114 AVEEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDD 173
+VE E ED+E ED G + D+DDDDDDDDDDDD DD
Sbjct: 241 SVESSEEGEDQEHED--------------DGEDEDDE------DDDDDDDDDDDDDDEDD 280
Query: 174 EEAEE 178
E+ E+
Sbjct: 281 EDEED 285
Score = 44.7 bits (104), Expect = 5e-05
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 116 EEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEE 175
++D + DEE D + S+ S+ G + + + DEDDDDDDDDDDDD D+++
Sbjct: 224 QKDIQRTDEETTDNQEGSVE---SSEEGEDQEHEDDGEDEDDEDDDDDDDDDDDDDDEDD 280
Query: 176 AEEK 179
+E+
Sbjct: 281 EDEE 284
>gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens]
Length = 1759
Score = 45.1 bits (105), Expect = 4e-05
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 16/78 (20%)
Query: 109 GQHLVAVEEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDD 168
G A S+++EEE+++L P+++ + DEDDD+DDDD+D
Sbjct: 1662 GAAAAAAAAGESSQEDEEEELEL----------------PEEEAEDDEDEDDDEDDDDED 1705
Query: 169 DDFDDEEAEEKVPVKKSI 186
DD DD++ + + ++S+
Sbjct: 1706 DDEDDDDEDLRTDSEESL 1723
>gi|153791492 eukaryotic translation initiation factor 3, subunit
C-like [Homo sapiens]
Length = 914
Score = 44.7 bits (104), Expect = 5e-05
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 13/74 (17%)
Query: 116 EEDAES---EDEEEEDVKLLSISGKRS-APGGGSKVPQKKVKLAVDEDDDDDDDDDDDDF 171
EED+E EDE+E+ V + K+S AP G S+ KK+ DED+D +D +DD+D+
Sbjct: 175 EEDSEGSSDEDEDEDGVSAATFLKKKSEAPSGESRKFLKKMD---DEDEDSEDSEDDEDW 231
Query: 172 D------DEEAEEK 179
D D ++EE+
Sbjct: 232 DTGSTSSDSDSEEE 245
>gi|83700233 eukaryotic translation initiation factor 3, subunit C
[Homo sapiens]
Length = 913
Score = 44.7 bits (104), Expect = 5e-05
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 13/74 (17%)
Query: 116 EEDAES---EDEEEEDVKLLSISGKRS-APGGGSKVPQKKVKLAVDEDDDDDDDDDDDDF 171
EED+E EDE+E+ V + K+S AP G S+ KK+ DED+D +D +DD+D+
Sbjct: 175 EEDSEGSSDEDEDEDGVSAATFLKKKSEAPSGESRKFLKKMD---DEDEDSEDSEDDEDW 231
Query: 172 D------DEEAEEK 179
D D ++EE+
Sbjct: 232 DTGSTSSDSDSEEE 245
>gi|4503525 eukaryotic translation initiation factor 3, subunit C
[Homo sapiens]
Length = 913
Score = 44.7 bits (104), Expect = 5e-05
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 13/74 (17%)
Query: 116 EEDAES---EDEEEEDVKLLSISGKRS-APGGGSKVPQKKVKLAVDEDDDDDDDDDDDDF 171
EED+E EDE+E+ V + K+S AP G S+ KK+ DED+D +D +DD+D+
Sbjct: 175 EEDSEGSSDEDEDEDGVSAATFLKKKSEAPSGESRKFLKKMD---DEDEDSEDSEDDEDW 231
Query: 172 D------DEEAEEK 179
D D ++EE+
Sbjct: 232 DTGSTSSDSDSEEE 245
>gi|37595539 ring finger protein 34 isoform 1 [Homo sapiens]
Length = 373
Score = 42.0 bits (97), Expect = 3e-04
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 134 ISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEKVP 181
+ G +++ G Q ++ A EDDDDDDD+DDDD ++E AE++ P
Sbjct: 199 MDGDQTSRSGVPAQVQSEITSANTEDDDDDDDEDDDD-EEENAEDRNP 245
Score = 27.7 bits (60), Expect = 5.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 157 DEDDDDDDDDDDDDFDDEEAEEKVPVKKSI 186
D+DD+DDDD++++ D K V+ S+
Sbjct: 227 DDDDEDDDDEEENAEDRNPGLSKERVRASL 256
>gi|37595537 ring finger protein 34 isoform 2 [Homo sapiens]
Length = 372
Score = 42.0 bits (97), Expect = 3e-04
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 134 ISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEKVP 181
+ G +++ G Q ++ A EDDDDDDD+DDDD ++E AE++ P
Sbjct: 198 MDGDQTSRSGVPAQVQSEITSANTEDDDDDDDEDDDD-EEENAEDRNP 244
Score = 27.7 bits (60), Expect = 5.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 157 DEDDDDDDDDDDDDFDDEEAEEKVPVKKSI 186
D+DD+DDDD++++ D K V+ S+
Sbjct: 226 DDDDEDDDDEEENAEDRNPGLSKERVRASL 255
>gi|41350214 asporin [Homo sapiens]
Length = 380
Score = 41.6 bits (96), Expect = 4e-04
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 145 SKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEKVPVKK 184
S + K + L ED DDDDDDDDDD DD+E P ++
Sbjct: 22 SHIALKNMMLKDMEDTDDDDDDDDDDDDDDEDNSLFPTRE 61
>gi|21735415 centromere protein B [Homo sapiens]
Length = 599
Score = 41.2 bits (95), Expect = 5e-04
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 24/94 (25%)
Query: 113 VAVEEDAESEDEEEEDVKLLS--------ISGKRSAPGG-GSKVPQKKVKLAV------- 156
V E D +S++EEEED + S G A G G+ Q++ +
Sbjct: 448 VEEEGDVDSDEEEEEDEESSSEGLEAEDWAQGVVEAGGSFGAYGAQEEAQCPTLHFLEGG 507
Query: 157 --------DEDDDDDDDDDDDDFDDEEAEEKVPV 182
+EDD+++DD+D+DD DDEE ++VPV
Sbjct: 508 EDSDSDSEEEDDEEEDDEDEDDDDDEEDGDEVPV 541
Score = 30.0 bits (66), Expect = 1.2
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 116 EEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEE 175
EE+ E E+EEE + + G+ GG + +L +E+ +++ D D D+ ++E+
Sbjct: 409 EEEEEEEEEEEGEGEEEEEEGEEEEEEGG-----EGEELGEEEEVEEEGDVDSDEEEEED 463
Query: 176 AE 177
E
Sbjct: 464 EE 465
Score = 28.9 bits (63), Expect = 2.7
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 116 EEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEE 175
EE+ E E+EEEE + G+ G +V +++ + DE++++D++ + + E+
Sbjct: 417 EEEGEGEEEEEEGEEEEEEGGEGEELGEEEEV-EEEGDVDSDEEEEEDEESSSEGLEAED 475
Score = 28.5 bits (62), Expect = 3.5
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 101 GSGPVHISGQHLVAVEEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDD 160
G GP L + E+ E E+EEEE+ + G+ G + + + E++
Sbjct: 390 GGGPNATITTSLKSEGEEEEEEEEEEEEEE---GEGEEEEEEGEEEEEEGGEGEELGEEE 446
Query: 161 DDDDDDDDDDFDDEEAEEK 179
+ +++ D D ++EE +E+
Sbjct: 447 EVEEEGDVDSDEEEEEDEE 465
Score = 28.5 bits (62), Expect = 3.5
Identities = 15/63 (23%), Positives = 31/63 (49%)
Query: 116 EEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEE 175
EE+ E E+EE E + + GG + ++ ++ + D D D+++++D+ E
Sbjct: 410 EEEEEEEEEEGEGEEEEEEGEEEEEEGGEGEELGEEEEVEEEGDVDSDEEEEEDEESSSE 469
Query: 176 AEE 178
E
Sbjct: 470 GLE 472
>gi|4504487 histidine rich calcium binding protein precursor [Homo
sapiens]
Length = 699
Score = 40.8 bits (94), Expect = 7e-04
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 117 EDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQ-----------KKVKLAVDEDDDDDDD 165
E+ E E+EEEE+ G GS+ + +EDDDDDDD
Sbjct: 193 EEEEEEEEEEEEASTEYGHQAHRHRGHGSEEDEDVSDGHHHHGPSHRHQGHEEDDDDDDD 252
Query: 166 DDDDDFDDEEAEE 178
DDDDD DD+ + E
Sbjct: 253 DDDDDDDDDVSIE 265
Score = 40.0 bits (92), Expect = 0.001
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 17/78 (21%)
Query: 117 EDAESEDEEEEDVKLLSISGK-----RSAPGGGSKV------------PQKKVKLAVDED 159
ED E E+EEEE+ + S + G GS+ P + + ++D
Sbjct: 188 EDDEGEEEEEEEEEEEEASTEYGHQAHRHRGHGSEEDEDVSDGHHHHGPSHRHQGHEEDD 247
Query: 160 DDDDDDDDDDDFDDEEAE 177
DDDDDDDDDDD DD E
Sbjct: 248 DDDDDDDDDDDDDDVSIE 265
Score = 33.1 bits (74), Expect = 0.14
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 25/83 (30%)
Query: 116 EEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDD------------- 162
EE+ E E+EEEE R G + DED D
Sbjct: 193 EEEEEEEEEEEEASTEYGHQAHRHRGHGSEE----------DEDVSDGHHHHGPSHRHQG 242
Query: 163 --DDDDDDDDFDDEEAEEKVPVK 183
+DDDDDDD DD++ ++ V ++
Sbjct: 243 HEEDDDDDDDDDDDDDDDDVSIE 265
Score = 30.4 bits (67), Expect = 0.92
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 116 EEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEE 175
EED ES ++ E+ G R + + L +E++++D ++++++ D+E
Sbjct: 496 EEDDESSEQGEKGTH----HGSRDQEDEEDEEEGHGLSLNQEEEEEEDKEEEEEEEDEER 551
Query: 176 AEEKVPV 182
EE+ V
Sbjct: 552 REERAEV 558
>gi|19924161 RPB5-mediating protein isoform b [Homo sapiens]
Length = 495
Score = 40.4 bits (93), Expect = 9e-04
Identities = 14/21 (66%), Positives = 19/21 (90%)
Query: 157 DEDDDDDDDDDDDDFDDEEAE 177
D+DDDDDDDDDDD+ DD++ +
Sbjct: 259 DDDDDDDDDDDDDNIDDDDGD 279
Score = 33.9 bits (76), Expect = 0.083
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 157 DEDDDDDDDDDDDDFDDEEAEEK 179
D+DDDDDDDDD+ D DD + + +
Sbjct: 261 DDDDDDDDDDDNIDDDDGDNDHE 283
Score = 33.5 bits (75), Expect = 0.11
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 157 DEDDDDDDDDDDDDFDDEEAEEKVPV 182
D+DDDDDDDD+ DD D + E + V
Sbjct: 262 DDDDDDDDDDNIDDDDGDNDHEALGV 287
Score = 32.0 bits (71), Expect = 0.32
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 160 DDDDDDDDDDDFDDEEAEE 178
DDDDDDDDDDD D+ + ++
Sbjct: 259 DDDDDDDDDDDDDNIDDDD 277
Score = 30.4 bits (67), Expect = 0.92
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 16/79 (20%)
Query: 112 LVAVEEDAESEDEEEEDVKLLSISGKR---------------SAPGGGSKVPQKKVKLAV 156
++A ED S +EE+ED + +++ S P G Q +
Sbjct: 194 VIANGEDTTSSEEEKED-RNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVNG 252
Query: 157 DEDDDDDDDDDDDDFDDEE 175
DDDDDDDD DD++
Sbjct: 253 SSSYHSDDDDDDDDDDDDD 271
>gi|19924159 RPB5-mediating protein isoform a [Homo sapiens]
Length = 535
Score = 40.4 bits (93), Expect = 9e-04
Identities = 14/21 (66%), Positives = 19/21 (90%)
Query: 157 DEDDDDDDDDDDDDFDDEEAE 177
D+DDDDDDDDDDD+ DD++ +
Sbjct: 299 DDDDDDDDDDDDDNIDDDDGD 319
Score = 33.9 bits (76), Expect = 0.083
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 157 DEDDDDDDDDDDDDFDDEEAEEK 179
D+DDDDDDDDD+ D DD + + +
Sbjct: 301 DDDDDDDDDDDNIDDDDGDNDHE 323
Score = 33.5 bits (75), Expect = 0.11
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 157 DEDDDDDDDDDDDDFDDEEAEEKVPV 182
D+DDDDDDDD+ DD D + E + V
Sbjct: 302 DDDDDDDDDDNIDDDDGDNDHEALGV 327
Score = 32.0 bits (71), Expect = 0.32
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 160 DDDDDDDDDDDFDDEEAEE 178
DDDDDDDDDDD D+ + ++
Sbjct: 299 DDDDDDDDDDDDDNIDDDD 317
Score = 30.4 bits (67), Expect = 0.92
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 16/79 (20%)
Query: 112 LVAVEEDAESEDEEEEDVKLLSISGKR---------------SAPGGGSKVPQKKVKLAV 156
++A ED S +EE+ED + +++ S P G Q +
Sbjct: 234 VIANGEDTTSSEEEKED-RNTNVNAMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVNG 292
Query: 157 DEDDDDDDDDDDDDFDDEE 175
DDDDDDDD DD++
Sbjct: 293 SSSYHSDDDDDDDDDDDDD 311
>gi|86262149 zinc finger and BTB domain containing 7C [Homo sapiens]
Length = 619
Score = 40.0 bits (92), Expect = 0.001
Identities = 15/23 (65%), Positives = 21/23 (91%)
Query: 157 DEDDDDDDDDDDDDFDDEEAEEK 179
D++DDDDD+DDDD+ D+EE EE+
Sbjct: 138 DKEDDDDDEDDDDEEDEEEEEEE 160
Score = 39.3 bits (90), Expect = 0.002
Identities = 15/23 (65%), Positives = 20/23 (86%)
Query: 157 DEDDDDDDDDDDDDFDDEEAEEK 179
D+ +DDDDD+DDDD +DEE EE+
Sbjct: 137 DDKEDDDDDEDDDDEEDEEEEEE 159
Score = 37.7 bits (86), Expect = 0.006
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 5/39 (12%)
Query: 141 PGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEK 179
PGG K ++DDDD+DDDD++D ++EE EE+
Sbjct: 129 PGGDGGEEDDK-----EDDDDDEDDDDEEDEEEEEEEEE 162
Score = 34.3 bits (77), Expect = 0.064
Identities = 11/22 (50%), Positives = 20/22 (90%)
Query: 157 DEDDDDDDDDDDDDFDDEEAEE 178
D+DD+DDDD++D++ ++EE E+
Sbjct: 142 DDDDEDDDDEEDEEEEEEEEED 163
Score = 32.0 bits (71), Expect = 0.32
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 20/60 (33%)
Query: 116 EEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEE 175
E+D E +D++E+D + +E++++DDDDD +DF D+E
Sbjct: 136 EDDKEDDDDDEDD--------------------DDEEDEEEEEEEEEDDDDDTEDFADQE 175
>gi|239750268 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1154
Score = 39.7 bits (91), Expect = 0.002
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 149 QKKVKLAVDEDDDDDDDDDDDDFDDEEA---EEKVPVKKSI 186
Q K K D+DDDDDDDDDDDD + +K+ VKK +
Sbjct: 16 QVKRKKRYDDDDDDDDDDDDDDIKVRQKSSWSQKLGVKKCV 56
>gi|239744576 PREDICTED: hypothetical protein XP_002343198 [Homo
sapiens]
Length = 1154
Score = 39.7 bits (91), Expect = 0.002
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 149 QKKVKLAVDEDDDDDDDDDDDDFDDEEA---EEKVPVKKSI 186
Q K K D+DDDDDDDDDDDD + +K+ VKK +
Sbjct: 16 QVKRKKRYDDDDDDDDDDDDDDIKVRQKSSWSQKLGVKKCV 56
>gi|110347463 human immunodeficiency virus type I enhancer binding
protein 2 [Homo sapiens]
Length = 2446
Score = 39.7 bits (91), Expect = 0.002
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 109 GQHLVAVEEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDD 168
G + +V++ E E ED+ + S+ + + D DD+DDDD+D+
Sbjct: 1859 GVSMTSVDDTETEEAENLEDLHKAAEKHSMSSISTDHQFSDAEESDGEDGDDNDDDDEDE 1918
Query: 169 DDFDDE 174
DDFDD+
Sbjct: 1919 DDFDDQ 1924
Score = 30.4 bits (67), Expect = 0.92
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 122 EDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEE 175
+D E E+ + L K + S + +E D +D DD+DDD +DE+
Sbjct: 1866 DDTETEEAENLEDLHKAAEKHSMSSISTDHQFSDAEESDGEDGDDNDDDDEDED 1919
Score = 28.9 bits (63), Expect = 2.7
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 157 DEDDDDDDDDDDDDFDD 173
D DDDD+D+DD DD D
Sbjct: 1910 DNDDDDEDEDDFDDQGD 1926
>gi|42740903 MTERF domain containing 2 [Homo sapiens]
Length = 381
Score = 39.3 bits (90), Expect = 0.002
Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 7/36 (19%)
Query: 150 KKVKLAVDEDDDD-------DDDDDDDDFDDEEAEE 178
K+ L DEDDDD D+D+DDDD DD+EAE+
Sbjct: 335 KRASLDEDEDDDDEEDNDEDDNDEDDDDEDDDEAED 370
Score = 35.0 bits (79), Expect = 0.037
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 27/65 (41%)
Query: 114 AVEEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDD 173
+++ED + +DEE+ D D++D+DDDD+DDD+ +D
Sbjct: 338 SLDEDEDDDDEEDNDE---------------------------DDNDEDDDDEDDDEAED 370
Query: 174 EEAEE 178
+ +E
Sbjct: 371 NDEDE 375
Score = 34.7 bits (78), Expect = 0.049
Identities = 12/23 (52%), Positives = 20/23 (86%)
Query: 157 DEDDDDDDDDDDDDFDDEEAEEK 179
DEDDDD+DDD+ +D D++E +++
Sbjct: 357 DEDDDDEDDDEAEDNDEDEDDDE 379
Score = 32.7 bits (73), Expect = 0.18
Identities = 11/23 (47%), Positives = 20/23 (86%)
Query: 157 DEDDDDDDDDDDDDFDDEEAEEK 179
D+DD+DDD+ +D+D D+++ EE+
Sbjct: 359 DDDDEDDDEAEDNDEDEDDDEEE 381
Score = 31.2 bits (69), Expect = 0.54
Identities = 13/24 (54%), Positives = 19/24 (79%), Gaps = 3/24 (12%)
Query: 157 DEDDDDDDD---DDDDDFDDEEAE 177
++DDD+DDD D+D+D DD+E E
Sbjct: 358 EDDDDEDDDEAEDNDEDEDDDEEE 381
>gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]
Length = 211
Score = 39.3 bits (90), Expect = 0.002
Identities = 18/61 (29%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 119 AESEDEEEEDVKLLSISGK-RSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAE 177
A+ +++ E+D+ GK +A G K + K K +ED++D++D++++D +DEE +
Sbjct: 149 AKLKEKYEKDIAAYQAKGKPEAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEDEEDEEDD 208
Query: 178 E 178
+
Sbjct: 209 D 209
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.132 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,208,566
Number of Sequences: 37866
Number of extensions: 419605
Number of successful extensions: 10572
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 189
Number of HSP's that attempted gapping in prelim test: 4205
Number of HSP's gapped (non-prelim): 3161
length of query: 186
length of database: 18,247,518
effective HSP length: 96
effective length of query: 90
effective length of database: 14,612,382
effective search space: 1315114380
effective search space used: 1315114380
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.