Guide to the Human Genome
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Name: LOC729199 Sequence: fasta or formatted (261aa) NCBI GI: 169160983
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         17           2
 C cysteine            1.9          5           1
 D aspartate           1.9          5           1
 E glutamate           7.7         20           2
 F phenylalanine       3.4          9           1
 G glycine            16.5         43           3
 H histidine           2.3          6           1
 I isoleucine          0.0          0           0
 K lysine              1.5          4           1
 L leucine             9.6         25           2
 M methionine          0.4          1           1
 N asparagine          1.1          3           1
 P proline             6.5         17           2
 Q glutamine           3.4          9           1
 R arginine           19.2         50           3
 S serine              8.8         23           2
 T threonine           3.1          8           1
 V valine              3.4          9           1
 W tryptophan          2.7          7           2
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
SFRS16                0.037   splicing factor, arginine/serine-rich 16 
LOC339192             0.035   PREDICTED: hypothetical protein 
LOC100292370          0.033   PREDICTED: hypothetical protein 
LOC100291835          0.033   PREDICTED: hypothetical protein XP_002346266 
LOC339192             0.031   PREDICTED: hypothetical protein 
LOC339192             0.031   PREDICTED: hypothetical protein 
TMEM88B               0.029   PREDICTED: hypothetical protein LOC643965 
TMEM88B               0.029   PREDICTED: hypothetical protein LOC643965 
HRNR                  0.027   hornerin 
MBD2                  0.027   methyl-CpG binding domain protein 2 testis-specific i...
MBD2                  0.027   methyl-CpG binding domain protein 2 isoform 1 
LOC100292292          0.027   PREDICTED: hypothetical protein 
LOC100291384          0.027   PREDICTED: hypothetical protein XP_002347156 
LOC100291533          0.027   PREDICTED: hypothetical protein XP_002347080 
LOC100287578          0.027   PREDICTED: hypothetical protein XP_002343004 
LOC100288002          0.027   PREDICTED: hypothetical protein XP_002342946 
CLIC6                 0.027   chloride intracellular channel 6 
SRRM1                 0.027   serine/arginine repetitive matrix 1 
LOC728046             0.025   PREDICTED: hypothetical protein 
UBAP2L                0.025   ubiquitin associated protein 2-like isoform a [Homo...
UBAP2L                0.025   ubiquitin associated protein 2-like isoform b [Homo...
SRRM2                 0.025   splicing coactivator subunit SRm300 
MLLT4                 0.023   myeloid/lymphoid or mixed-lineage leukemia (trithora...
LOC100291843          0.023   PREDICTED: hypothetical protein XP_002344913 
LOC390595             0.023   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             0.023   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             0.023   PREDICTED: hypothetical protein 
SMAD6                 0.023   SMAD family member 6 isoform 1 
ZNF497                0.023   zinc finger protein 497 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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