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Search of human proteins with 16753227
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|16753227 ribosomal protein L6 [Homo sapiens]
(288 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|67189747 ribosomal protein L6 [Homo sapiens] 572 e-163
gi|16753227 ribosomal protein L6 [Homo sapiens] 572 e-163
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 41 0.001
gi|104526627 triadin [Homo sapiens] 37 0.015
gi|113430626 PREDICTED: hypothetical protein LOC729078 [Homo sap... 34 0.17
gi|113430146 PREDICTED: hypothetical protein LOC729078 [Homo sap... 34 0.17
gi|117553580 adaptor-related protein complex 3, delta 1 subunit ... 33 0.22
gi|239749449 PREDICTED: hypothetical protein [Homo sapiens] 33 0.29
gi|118572603 ubinuclein 1 [Homo sapiens] 32 0.50
gi|118572601 ubinuclein 1 [Homo sapiens] 32 0.50
gi|239754909 PREDICTED: hypothetical protein [Homo sapiens] 32 0.50
gi|239752449 PREDICTED: hypothetical protein [Homo sapiens] 32 0.50
gi|18765756 dual-specificity tyrosine-(Y)-phosphorylation regula... 32 0.65
gi|18765754 dual-specificity tyrosine-(Y)-phosphorylation regula... 32 0.65
gi|18765750 dual-specificity tyrosine-(Y)-phosphorylation regula... 32 0.65
gi|18765752 dual-specificity tyrosine-(Y)-phosphorylation regula... 32 0.65
gi|18765758 dual-specificity tyrosine-(Y)-phosphorylation regula... 32 0.65
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 32 0.65
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 32 0.65
gi|21361576 zinc finger, CCHC domain containing 17 [Homo sapiens] 32 0.65
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 31 1.1
gi|4885377 histone cluster 1, H1d [Homo sapiens] 31 1.1
gi|153945728 microtubule-associated protein 1B [Homo sapiens] 31 1.4
gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo... 30 1.9
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 30 1.9
gi|4885381 histone cluster 1, H1b [Homo sapiens] 30 1.9
gi|5802970 AFG3 ATPase family gene 3-like 2 [Homo sapiens] 30 1.9
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 30 2.5
gi|24475863 H1 histone family, member O, oocyte-specific [Homo s... 30 2.5
gi|110349719 titin isoform N2-A [Homo sapiens] 30 3.2
>gi|67189747 ribosomal protein L6 [Homo sapiens]
Length = 288
Score = 572 bits (1473), Expect = e-163
Identities = 288/288 (100%), Positives = 288/288 (100%)
Query: 1 MAGEKVEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRS 60
MAGEKVEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRS
Sbjct: 1 MAGEKVEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRS 60
Query: 61 AMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTED 120
AMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTED
Sbjct: 61 AMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTED 120
Query: 121 VPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLV 180
VPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLV
Sbjct: 121 VPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLV 180
Query: 181 LNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKY 240
LNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKY
Sbjct: 181 LNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKY 240
Query: 241 EITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGIYPHKLVF 288
EITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGIYPHKLVF
Sbjct: 241 EITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGIYPHKLVF 288
>gi|16753227 ribosomal protein L6 [Homo sapiens]
Length = 288
Score = 572 bits (1473), Expect = e-163
Identities = 288/288 (100%), Positives = 288/288 (100%)
Query: 1 MAGEKVEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRS 60
MAGEKVEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRS
Sbjct: 1 MAGEKVEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRS 60
Query: 61 AMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTED 120
AMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTED
Sbjct: 61 AMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTED 120
Query: 121 VPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLV 180
VPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLV
Sbjct: 121 VPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLV 180
Query: 181 LNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKY 240
LNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKY
Sbjct: 181 LNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKY 240
Query: 241 EITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGIYPHKLVF 288
EITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGIYPHKLVF
Sbjct: 241 EITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGIYPHKLVF 288
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 40.8 bits (94), Expect = 0.001
Identities = 42/161 (26%), Positives = 62/161 (38%), Gaps = 28/161 (17%)
Query: 2 AGEKVEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSA 61
A E EKP K KPE K ++ +K K K K GK H
Sbjct: 363 AKESSEKPPEKPAKPERVKTESSEALKAEKRKLIKDKVGKKH------------------ 404
Query: 62 MYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDV 121
K K S + K +K+KKE + K + D+ +K + T+
Sbjct: 405 -------LKEKISKLEEKKDKEKKE--IKKERKELKKDEGRKEEKKDAKKEEKRKDTKPE 455
Query: 122 PRKLLSHGKKPFSQHVRK-LRASITPGTILIILTGRHRGKR 161
+K+ KPF+ VRK L + PG + I + RG++
Sbjct: 456 LKKISKPDLKPFTPEVRKTLYKAKVPGRVKIDRSRAIRGEK 496
>gi|104526627 triadin [Homo sapiens]
Length = 729
Score = 37.4 bits (85), Expect = 0.015
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 1 MAGEKVEKPDTKEKKPEAKKVDAGGKVK--KGNLKAKKPKKGKPHCSRNPVLVRGIGRYS 58
+A + K D EKK ++KK +V+ KG + KK K +P +++P +
Sbjct: 365 IAAQAAAKKD--EKKEDSKKTKKPAEVEQPKGKKQEKKEKHVEP--AKSPKKEHSVPSDK 420
Query: 59 RSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPT 118
+ + +A + + K V KK+EK TV + + +K+G T + K P
Sbjct: 421 QVKAKTERAKEEIGAVSIKKAVPGKKEEKTTKTVEQEIRKEKSGKTSSILKDKEPIKGKE 480
Query: 119 EDVPRKL 125
E VP L
Sbjct: 481 EKVPASL 487
>gi|113430626 PREDICTED: hypothetical protein LOC729078 [Homo
sapiens]
Length = 161
Score = 33.9 bits (76), Expect = 0.17
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 17/108 (15%)
Query: 5 KVEKPDTKEKKPEA----KKVDAGGKVKKGNLKAKKP--------KKGKPHCSRNPVLVR 52
K P TKEKK + +K + GKV+K +K KKP + P CS+ P +
Sbjct: 23 KKPTPRTKEKKEKKNSSQQKTNKNGKVEKKIIKVKKPLQRNSRKKTQSPPSCSKKPRIT- 81
Query: 53 GIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDK 100
+ K ++ KSK ++++K K+ + G K
Sbjct: 82 ----MRPTIFVCHHKQNKTQHKNQKSKHKRQQKMKIRRASPEAAGKSK 125
>gi|113430146 PREDICTED: hypothetical protein LOC729078 [Homo
sapiens]
Length = 161
Score = 33.9 bits (76), Expect = 0.17
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 17/108 (15%)
Query: 5 KVEKPDTKEKKPEA----KKVDAGGKVKKGNLKAKKP--------KKGKPHCSRNPVLVR 52
K P TKEKK + +K + GKV+K +K KKP + P CS+ P +
Sbjct: 23 KKPTPRTKEKKEKKNSSQQKTNKNGKVEKKIIKVKKPLQRNSRKKTQSPPSCSKKPRIT- 81
Query: 53 GIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDK 100
+ K ++ KSK ++++K K+ + G K
Sbjct: 82 ----MRPTIFVCHHKQNKTQHKNQKSKHKRQQKMKIRRASPEAAGKSK 125
>gi|117553580 adaptor-related protein complex 3, delta 1 subunit
isoform 2 [Homo sapiens]
Length = 1153
Score = 33.5 bits (75), Expect = 0.22
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 1 MAGEKVEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGK 41
M +K +KP KEKK + K+ D K +K K+ KPKK K
Sbjct: 836 MVEKKSKKPKKKEKKHKEKERDKEKKKEKEKKKSPKPKKKK 876
>gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 33.1 bits (74), Expect = 0.29
Identities = 21/82 (25%), Positives = 37/82 (45%)
Query: 6 VEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSR 65
+ KP T+ + K+ K K+ K +K ++GK + RG R + +
Sbjct: 25 ISKPCTQRESERKKERREREKRKREREKERKRERGKKEKKKRKKRERGKERERKRKEREK 84
Query: 66 KAMYKRKYSAAKSKVEKKKKEK 87
+ +R+ K K EKKK+E+
Sbjct: 85 QRKERREKERRKRKKEKKKRER 106
Score = 28.5 bits (62), Expect = 7.2
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 5 KVEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMYS 64
K +K K+++ E K+ GK ++ K KK ++ K RN R R
Sbjct: 134 KRKKRRKKKRRKERKREKERGKRERKRKKRKKEEREKKR-ERN--------RKERKKERE 184
Query: 65 RKAMYKRKYSAAKSKVEKKKKEK 87
RK +RK K + +KK+++K
Sbjct: 185 RKERRERKKERKKERRKKKERKK 207
>gi|118572603 ubinuclein 1 [Homo sapiens]
Length = 1134
Score = 32.3 bits (72), Expect = 0.50
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 12 KEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKR 71
KEKK KK K+K+G K KK KK + + +A+ + K K+
Sbjct: 181 KEKK---KKSPKKRKLKEGGEKIKKKKKDDTYDKEKKSKKSKFSKAGFTALNASKEKKKK 237
Query: 72 KYSAAKSKVEKKKK 85
KYS A S E KK
Sbjct: 238 KYSGALSVKEMLKK 251
>gi|118572601 ubinuclein 1 [Homo sapiens]
Length = 1134
Score = 32.3 bits (72), Expect = 0.50
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 12 KEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKR 71
KEKK KK K+K+G K KK KK + + +A+ + K K+
Sbjct: 181 KEKK---KKSPKKRKLKEGGEKIKKKKKDDTYDKEKKSKKSKFSKAGFTALNASKEKKKK 237
Query: 72 KYSAAKSKVEKKKK 85
KYS A S E KK
Sbjct: 238 KYSGALSVKEMLKK 251
>gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 32.3 bits (72), Expect = 0.50
Identities = 22/85 (25%), Positives = 39/85 (45%)
Query: 3 GEKVEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAM 62
G+K +K + K+++ E KK + K+G K K+ KK K R + R
Sbjct: 82 GKKEKKGERKKEERERKKRRREKENKEGEEKEKRKKKEKKERGRTSKEGKERERKEERKR 141
Query: 63 YSRKAMYKRKYSAAKSKVEKKKKEK 87
RK ++K K + K++K++
Sbjct: 142 EERKERERKKEEREKERERKERKKR 166
>gi|239752449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 32.3 bits (72), Expect = 0.50
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 20/81 (24%)
Query: 7 EKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRK 66
++ + KEK+ E KK K KK K KK KK K +K
Sbjct: 101 QREEKKEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKK--------------------KKK 140
Query: 67 AMYKRKYSAAKSKVEKKKKEK 87
KRK + K KKKK+K
Sbjct: 141 RKRKRKRKRKRKKKRKKKKKK 161
>gi|18765756 dual-specificity tyrosine-(Y)-phosphorylation regulated
kinase 1A isoform 5 [Homo sapiens]
Length = 529
Score = 32.0 bits (71), Expect = 0.65
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 187 RRTHQKF---VIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEK 239
RR Q F A K+ + +K KH+ + Y+ KK K RHQ+G+ D+ +K
Sbjct: 79 RRMPQTFRDPATAPLRKLSVDLIKTYKHINEVYYAKK---KRRHQQGQGDDSSHKK 131
>gi|18765754 dual-specificity tyrosine-(Y)-phosphorylation regulated
kinase 1A isoform 4 [Homo sapiens]
Length = 540
Score = 32.0 bits (71), Expect = 0.65
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 187 RRTHQKF---VIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEK 239
RR Q F A K+ + +K KH+ + Y+ KK K RHQ+G+ D+ +K
Sbjct: 79 RRMPQTFRDPATAPLRKLSVDLIKTYKHINEVYYAKK---KRRHQQGQGDDSSHKK 131
>gi|18765750 dual-specificity tyrosine-(Y)-phosphorylation regulated
kinase 1A isoform 3 [Homo sapiens]
Length = 584
Score = 32.0 bits (71), Expect = 0.65
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 187 RRTHQKF---VIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEK 239
RR Q F A K+ + +K KH+ + Y+ KK K RHQ+G+ D+ +K
Sbjct: 79 RRMPQTFRDPATAPLRKLSVDLIKTYKHINEVYYAKK---KRRHQQGQGDDSSHKK 131
>gi|18765752 dual-specificity tyrosine-(Y)-phosphorylation regulated
kinase 1A isoform 2 [Homo sapiens]
Length = 754
Score = 32.0 bits (71), Expect = 0.65
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 187 RRTHQKF---VIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEK 239
RR Q F A K+ + +K KH+ + Y+ KK K RHQ+G+ D+ +K
Sbjct: 70 RRMPQTFRDPATAPLRKLSVDLIKTYKHINEVYYAKK---KRRHQQGQGDDSSHKK 122
>gi|18765758 dual-specificity tyrosine-(Y)-phosphorylation regulated
kinase 1A isoform 1 [Homo sapiens]
Length = 763
Score = 32.0 bits (71), Expect = 0.65
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 187 RRTHQKF---VIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEK 239
RR Q F A K+ + +K KH+ + Y+ KK K RHQ+G+ D+ +K
Sbjct: 79 RRMPQTFRDPATAPLRKLSVDLIKTYKHINEVYYAKK---KRRHQQGQGDDSSHKK 131
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 32.0 bits (71), Expect = 0.65
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 4 EKVEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMY 63
EK E+ TKE+ KV+ K K K+ +KGK ++PV +G +S +
Sbjct: 590 EKSEEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKG-----KSPVP 644
Query: 64 SRKAMYKRKYSAAKSKVEKKKKEKV 88
K K KS VE+K K V
Sbjct: 645 KSPVEEKGKSPVPKSPVEEKGKSPV 669
Score = 31.6 bits (70), Expect = 0.84
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 8/112 (7%)
Query: 3 GEKVEKPDTKEKKPEAKKVDAGGKVKK-GNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSA 61
GE+ E + EKK E K + K + + K +KP+K K ++PV +G +S
Sbjct: 577 GEEAEAKE--EKKVEEKSEEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSP 634
Query: 62 MYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMP 113
+ K K KS VE+K K V + + G + V + K P
Sbjct: 635 VEE-----KGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVSKSPVEEKAKSP 681
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 32.0 bits (71), Expect = 0.65
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 4 EKVEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMY 63
EK E+ TKE+ KV+ K K K+ +KGK ++PV +G +S +
Sbjct: 214 EKSEEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKG-----KSPVP 268
Query: 64 SRKAMYKRKYSAAKSKVEKKKKEKV 88
K K KS VE+K K V
Sbjct: 269 KSPVEEKGKSPVPKSPVEEKGKSPV 293
Score = 31.6 bits (70), Expect = 0.84
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 8/112 (7%)
Query: 3 GEKVEKPDTKEKKPEAKKVDAGGKVKK-GNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSA 61
GE+ E + EKK E K + K + + K +KP+K K ++PV +G +S
Sbjct: 201 GEEAEAKE--EKKVEEKSEEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSP 258
Query: 62 MYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMP 113
+ K K KS VE+K K V + + G + V + K P
Sbjct: 259 VEE-----KGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVSKSPVEEKAKSP 305
>gi|21361576 zinc finger, CCHC domain containing 17 [Homo sapiens]
Length = 241
Score = 32.0 bits (71), Expect = 0.65
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 9 PDTKEKKPEAK--KVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRK 66
PD +E+K EAK + + + + K KK KK K H R + ++
Sbjct: 159 PDEEEEKEEAKSAEFEKPDPTRNPSRKRKKEKKKKKHRDRKS---SDSDSSDSESDTGKR 215
Query: 67 AMYKRKYSAAKSKVEKKKKEK 87
A + K S A K +KKKK K
Sbjct: 216 ARHTSKDSKAAKKKKKKKKHK 236
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 31.2 bits (69), Expect = 1.1
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 13/132 (9%)
Query: 1 MAGEKVEKPDTKEKKPEAK------KVDAGGKVKKGNLKAKKPKKGKPHCSRNPVL--VR 52
+AG K T +KP AK GG+ + KKP++ ++ R
Sbjct: 283 LAGAKRRGAATAGEKPAAKGRGGRGPKSLGGQNPRWGRGGKKPRRRGQKATKAAAAGTKR 342
Query: 53 GIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKM 112
G G ++A+ K+ K++ + +K +++K A K GG G R K R
Sbjct: 343 GGGGQQKAAVVGVKSRKKQR-----RRGKKPRRQKASAAGAKSRGGGDKKGLREAKRRGD 397
Query: 113 PRYYPTEDVPRK 124
R P PR+
Sbjct: 398 GRKKPRWQNPRR 409
>gi|4885377 histone cluster 1, H1d [Homo sapiens]
Length = 221
Score = 31.2 bits (69), Expect = 1.1
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 4 EKVEKPDTKEKKPEAKKV-DAGGKVKKGNLKAKKPKKGKPHCSR 46
+KV K K K P+ KK + K K KA KPK GKP ++
Sbjct: 169 KKVAKSAKKVKTPQPKKAAKSPAKAKAPKPKAAKPKSGKPKVTK 212
>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
Length = 2468
Score = 30.8 bits (68), Expect = 1.4
Identities = 30/149 (20%), Positives = 61/149 (40%), Gaps = 14/149 (9%)
Query: 5 KVEKPDTKEKKPEAKKVDAGGKVKKGNLKAK---------KPKKGKPHCSRNPVLVRGIG 55
K +KP E KP + + K + +KA+ KPK K + V+
Sbjct: 589 KKDKPIKTETKPSVTEKEVPSKEEPSPVKAEVAEKQATDVKPKAAKEKTVKKETKVKPED 648
Query: 56 RYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRY 115
+ +K + K++ K EK KKE+V V K + ++ + +++ +
Sbjct: 649 KKEEKEK-PKKEVAKKEDKTPIKKEEKPKKEEVKKEVKKEIKKEEKKEPK----KEVKKE 703
Query: 116 YPTEDVPRKLLSHGKKPFSQHVRKLRASI 144
P ++V +++ KK + ++ + I
Sbjct: 704 TPPKEVKKEVKKEEKKEVKKEEKEPKKEI 732
>gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo
sapiens]
Length = 1158
Score = 30.4 bits (67), Expect = 1.9
Identities = 32/134 (23%), Positives = 47/134 (35%), Gaps = 1/134 (0%)
Query: 3 GEKVEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAM 62
G+ ++P T + P K D G K KK + K PK+ R P + +
Sbjct: 73 GKPGKRPGTAAEVPPEKTKDKGKKGKK-DKGPKVPKESLEGSPRPPKKGKEKPPKATKKP 131
Query: 63 YSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVP 122
+ +K K KK KEK KP G + + + P P P
Sbjct: 132 KEKPPKATKKPKEKPPKATKKPKEKPPKATKKPPSGKRPPILAPSETLEWPLPPPPSPGP 191
Query: 123 RKLLSHGKKPFSQH 136
+L G P S +
Sbjct: 192 EELPQEGGAPLSNN 205
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 30.4 bits (67), Expect = 1.9
Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 14/123 (11%)
Query: 4 EKVEKPDTKEKK-PEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAM 62
E EK + KE K P+A K+ K KK KPK K ++ P S ++
Sbjct: 658 EPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSSKKSSNKKP--------DSEASA 709
Query: 63 YSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVP 122
+K + + S ++K + G K +R VK ++ TED+
Sbjct: 710 LKKKVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGVQKRRSSRQVKRKRY-----TEDLE 764
Query: 123 RKL 125
K+
Sbjct: 765 FKI 767
>gi|4885381 histone cluster 1, H1b [Homo sapiens]
Length = 226
Score = 30.4 bits (67), Expect = 1.9
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 2 AGEKVEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSA 61
A + V+K K KKP A V K K A KPKK +++P + + +
Sbjct: 148 AKKAVKKTPKKAKKPAAAGVKKVAKSPKKAKAAAKPKK----ATKSPAKPKAVKPKAAKP 203
Query: 62 MYSRKAMYKRKYSAAKSKVEKKK 84
++ K K + AK KKK
Sbjct: 204 KAAKPKAAKPKAAKAKKAAAKKK 226
Score = 29.3 bits (64), Expect = 4.2
Identities = 29/97 (29%), Positives = 36/97 (37%), Gaps = 2/97 (2%)
Query: 5 KVEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKP-KKGKPHCSRNPVLVRGIGRYSRSAMY 63
K +KP K K A VKK KAKKP G +++P + + + A
Sbjct: 130 KAKKPAGATPKKAKKAAGAKKAVKKTPKKAKKPAAAGVKKVAKSPKKAKAAAK-PKKATK 188
Query: 64 SRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDK 100
S K AAK K K K K A K K
Sbjct: 189 SPAKPKAVKPKAAKPKAAKPKAAKPKAAKAKKAAAKK 225
Score = 28.9 bits (63), Expect = 5.5
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 12/99 (12%)
Query: 7 EKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKG---------KPHCSRNPVLVRGIGRY 57
+K + E KP+AKK A K KK KK P ++ P G+ +
Sbjct: 112 KKAASGEAKPKAKKAGAAKAKKPAGATPKKAKKAAGAKKAVKKTPKKAKKPA-AAGVKKV 170
Query: 58 SRSAMYSRKAMYKRK--YSAAKSKVEKKKKEKVLATVTK 94
++S ++ A +K S AK K K K K A K
Sbjct: 171 AKSPKKAKAAAKPKKATKSPAKPKAVKPKAAKPKAAKPK 209
>gi|5802970 AFG3 ATPase family gene 3-like 2 [Homo sapiens]
Length = 797
Score = 30.4 bits (67), Expect = 1.9
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 44 CSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGG 103
CSR P +G G+Y + +KA S K + +KK+ K AT GG GG
Sbjct: 66 CSRPP---KGFGKYFPNGKNGKKA------SEPKEVMGEKKESKPAATTRSSGGGGGGGG 116
Query: 104 TR 105
R
Sbjct: 117 KR 118
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 30.0 bits (66), Expect = 2.5
Identities = 31/107 (28%), Positives = 41/107 (38%), Gaps = 23/107 (21%)
Query: 5 KVEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMYS 64
K K K K+P+ K K K G KA+KP R A +
Sbjct: 125 KEPKEPRKAKEPKKAKEHKEPKQKDGAKKARKP---------------------REASGT 163
Query: 65 RKAMYKRKY--SAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKL 109
++A KR SAA++K K KE+ V K G + T V L
Sbjct: 164 KEAKEKRSCTDSAARTKSRKASKEQGPTPVEKKKKGKRKSETTVESL 210
>gi|24475863 H1 histone family, member O, oocyte-specific [Homo
sapiens]
Length = 346
Score = 30.0 bits (66), Expect = 2.5
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 10/89 (11%)
Query: 8 KPDTKEKKPEAKKVDAGGKV---KKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMYS 64
K ++K KP A KV G KK KAK PK G+ ++ +G G A S
Sbjct: 257 KAESKSSKPTASKVKNGAASPTKKKVVAKAKAPKAGQGPNTKAAAPAKGSGSKVVPAHLS 316
Query: 65 RKAMYKR-------KYSAAKSKVEKKKKE 86
RK + A+ SKV ++ E
Sbjct: 317 RKTEAPKGPRKAGLPIKASSSKVSSQRAE 345
Score = 28.1 bits (61), Expect = 9.3
Identities = 34/130 (26%), Positives = 47/130 (36%), Gaps = 27/130 (20%)
Query: 5 KVEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGKP---HCSRNPVLVRGIGRY---- 57
KV+KP K K GG K ++ + +K P R P G+ R
Sbjct: 182 KVQKPPPKPGAATEKARKQGGAAKDTRAQSGEARKVPPKPDKAMRAPSSAGGLSRKAKAK 241
Query: 58 -SRSAMYSRKAMYKRKYSAAKSKVEKKK---------KEKVLATVTKPVGGD-------- 99
SRS+ +A K K + SK K K+KV+A P G
Sbjct: 242 GSRSSQGDAEAYRKTKAESKSSKPTASKVKNGAASPTKKKVVAKAKAPKAGQGPNTKAAA 301
Query: 100 --KNGGTRVV 107
K G++VV
Sbjct: 302 PAKGSGSKVV 311
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 29.6 bits (65), Expect = 3.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 227 HQEGEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKAI 264
+QE E+ +KE YE + +RK+ K + + P K I
Sbjct: 9144 YQEREVIQVQKEVYEESHERKVPAKVPEKKAPPPPKVI 9181
Score = 28.9 bits (63), Expect = 5.5
Identities = 33/129 (25%), Positives = 48/129 (37%), Gaps = 15/129 (11%)
Query: 4 EKVEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMY 63
EK P K+K+ KV K + + PKK KP ++ P +
Sbjct: 9961 EKKPVPVPKKKEAPPAKVPEVPKKPEEKVPVLIPKKEKPPPAKVPEV------------- 10007
Query: 64 SRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPR 123
+K + + K K + KV KPV K K+ P P +VP+
Sbjct: 10008 PKKPVPEEKVPVPVPKKVEAPPAKVPEVPKKPVPEKKVPVPAPKKVEAPPAKVP--EVPK 10065
Query: 124 KLLSHGKKP 132
KL+ KKP
Sbjct: 10066 KLIPEEKKP 10074
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,002,465
Number of Sequences: 37866
Number of extensions: 487296
Number of successful extensions: 2232
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 2121
Number of HSP's gapped (non-prelim): 140
length of query: 288
length of database: 18,247,518
effective HSP length: 101
effective length of query: 187
effective length of database: 14,423,052
effective search space: 2697110724
effective search space used: 2697110724
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.