Guide to the Human Genome
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Name: LOC729078 Sequence: fasta or formatted (161aa) NCBI GI: 113430626
Description:

PREDICTED: hypothetical protein LOC729078

Not currently referenced in the text

Other entries for this name:
alt prot {161aa} PREDICTED: hypothetical protein LOC729078
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6          9           2
 C cysteine            1.9          3           1
 D aspartate           0.0          0           0
 E glutamate           3.7          6           1
 F phenylalanine       0.6          1           1
 G glycine             2.5          4           1
 H histidine           4.3          7           2
 I isoleucine          5.0          8           2
 K lysine             21.7         35           2
 L leucine             2.5          4           1
 M methionine          2.5          4           1
 N asparagine          5.6          9           1
 P proline             7.5         12           2
 Q glutamine           8.7         14           2
 R arginine            6.2         10           2
 S serine              9.3         15           2
 T threonine           8.1         13           1
 V valine              3.7          6           1
 W tryptophan          0.6          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC729078 
LOC729078             0.993   PREDICTED: hypothetical protein LOC729078 
MAP1B                 0.066   microtubule-associated protein 1B 
PRPF38B               0.066   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
LOC100133053          0.066   PREDICTED: hypothetical protein 
CXorf51               0.066   hypothetical protein LOC100129239 
BRD4                  0.056   bromodomain-containing protein 4 isoform short 
BRD4                  0.056   bromodomain-containing protein 4 isoform long 
SRRM2                 0.056   splicing coactivator subunit SRm300 
NKAP                  0.050   NFKB activating protein 
NEFH                  0.050   neurofilament, heavy polypeptide 200kDa 
TRDN                  0.050   triadin 
KIAA1853              0.046   KIAA1853 protein 
LOC100133698          0.046   PREDICTED: hypothetical protein 
NKAPL                 0.046   NFKB activating protein-like 
HP1BP3                0.040   HP1-BP74 
CHD7                  0.040   chromodomain helicase DNA binding protein 7 
XIRP2                 0.040   xin actin-binding repeat containing 2 isoform 1 [Ho...
SFRS2IP               0.040   splicing factor, arginine/serine-rich 2, interactin...
LOC100294088          0.040   PREDICTED: hypothetical protein, partial 
TTC14                 0.040   tetratricopeptide repeat domain 14 isoform a 
AP3D1                 0.036   adaptor-related protein complex 3, delta 1 subunit ...
LOC100294364          0.036   PREDICTED: hypothetical protein 
LOC100133599          0.036   PREDICTED: hypothetical protein 
DEK                   0.036   DEK oncogene isoform 2 
DEK                   0.036   DEK oncogene isoform 1 
WDR87                 0.036   NYD-SP11 protein 
THOC2                 0.036   THO complex 2 
MLLT3                 0.036   myeloid/lymphoid or mixed-lineage leukemia (trithor...
PHF3                  0.036   PHD finger protein 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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