Guide to the Human Genome
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Name: UBN1 Sequence: fasta or formatted (1134aa) NCBI GI: 118572601
Description:

ubinuclein 1

Referenced in:

Nucleus and Nucleolus

Other entries for this name:
alt mRNA [1134aa] ubinuclein 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1        103           4
 C cysteine            0.9         10           1
 D aspartate           4.3         49           2
 E glutamate           7.1         80           3
 F phenylalanine       2.9         33           2
 G glycine             7.8         89           2
 H histidine           2.7         31           2
 I isoleucine          2.6         29           2
 K lysine             10.6        120           5
 L leucine             9.2        104           2
 M methionine          1.2         14           1
 N asparagine          2.2         25           2
 P proline             8.1         92           3
 Q glutamine           4.9         55           3
 R arginine            3.8         43           2
 S serine             12.8        145           5
 T threonine           3.4         38           2
 V valine              4.8         54           2
 W tryptophan          0.4          4           1
 Y tyrosine            1.4         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubinuclein 1 
UBN1                  1.000   ubinuclein 1 
UBN2                  0.265   ubinuclein 2 
MED1                  0.021   mediator complex subunit 1 
CNOT3                 0.019   CCR4-NOT transcription complex, subunit 3 
NACA                  0.017   nascent polypeptide-associated complex alpha subuni...
MUC4                  0.017   mucin 4 isoform a 
DOCK4                 0.016   dedicator of cytokinesis 4 
LOC100288540          0.014   PREDICTED: hypothetical protein XP_002342775 
ATN1                  0.014   atrophin-1 
ATN1                  0.014   atrophin-1 
NUP214                0.014   nucleoporin 214kDa 
MFAP1                 0.014   microfibrillar-associated protein 1 
FLJ22184              0.014   PREDICTED: hypothetical protein FLJ22184 
POM121                0.014   nuclear pore membrane protein 121 
SRCAP                 0.014   Snf2-related CBP activator protein 
POM121C               0.014   POM121 membrane glycoprotein (rat)-like 
FLJ22184              0.013   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.013   PREDICTED: hypothetical protein LOC80164 
ASXL2                 0.013   additional sex combs like 2 
AGAP2                 0.013   centaurin, gamma 1 isoform PIKE-L 
TNRC18                0.013   trinucleotide repeat containing 18 
SPTY2D1               0.013   SPT2, Suppressor of Ty, domain containing 1 
LOC100133756          0.013   PREDICTED: hypothetical protein, partial 
LOC100133698          0.013   PREDICTED: hypothetical protein 
C13orf23              0.013   hypothetical protein LOC80209 isoform 2 
C13orf23              0.013   hypothetical protein LOC80209 isoform 1 
BOD1L                 0.012   biorientation of chromosomes in cell division 1-like...
CALD1                 0.012   caldesmon 1 isoform 1 
ZC3H18                0.012   zinc finger CCCH-type containing 18 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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