Guide to the Human Genome
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Name: HIST1H1D Sequence: fasta or formatted (221aa) NCBI GI: 4885377
Description:

histone cluster 1, H1d

Referenced in:

Histones, Related Proteins, and Modifying Enzymes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            20.8         46           3
 C cysteine            0.0          0           0
 D aspartate           0.5          1           1
 E glutamate           2.7          6           1
 F phenylalanine       0.5          1           1
 G glycine             7.7         17           1
 H histidine           0.0          0           0
 I isoleucine          1.8          4           1
 K lysine             27.6         61           3
 L leucine             4.5         10           1
 M methionine          0.5          1           1
 N asparagine          1.4          3           2
 P proline            10.0         22           2
 Q glutamine           0.9          2           1
 R arginine            1.8          4           1
 S serine              7.2         16           1
 T threonine           6.3         14           1
 V valine              5.4         12           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   histone cluster 1, H1d 
HIST1H1E              0.824   histone cluster 1, H1e 
HIST1H1C              0.758   histone cluster 1, H1c 
HIST1H1B              0.720   histone cluster 1, H1b 
HIST1H1A              0.579   histone cluster 1, H1a 
HIST1H1T              0.353   histone cluster 1, H1t 
H1F0                  0.209   H1 histone family, member 0 
H1FX                  0.174   H1 histone family, member X 
NEFH                  0.106   neurofilament, heavy polypeptide 200kDa 
H1FOO                 0.103   H1 histone family, member O, oocyte-specific 
H1FNT                 0.093   H1 histone family, member N, testis-specific 
SHPRH                 0.088   SNF2 histone linker PHD RING helicase isoform a [Ho...
SHPRH                 0.088   SNF2 histone linker PHD RING helicase isoform b [Hom...
MAP1B                 0.078   microtubule-associated protein 1B 
AEBP1                 0.076   adipocyte enhancer binding protein 1 precursor [Homo...
NOLC1                 0.063   nucleolar and coiled-body phosphoprotein 1 
HP1BP3                0.060   HP1-BP74 
COL6A3                0.058   alpha 3 type VI collagen isoform 5 precursor 
COL6A3                0.058   alpha 3 type VI collagen isoform 1 precursor 
COL6A3                0.058   alpha 3 type VI collagen isoform 4 precursor 
CHD6                  0.058   chromodomain helicase DNA binding protein 6 
LOC100292370          0.053   PREDICTED: hypothetical protein 
LOC100292383          0.053   PREDICTED: hypothetical protein 
LOC100292035          0.050   PREDICTED: hypothetical protein XP_002345623 
TCOF1                 0.050   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.050   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.050   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.050   Treacher Collins-Franceschetti syndrome 1 isoform b ...
TCOF1                 0.050   Treacher Collins-Franceschetti syndrome 1 isoform a ...
TCOF1                 0.050   Treacher Collins-Franceschetti syndrome 1 isoform c ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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