SMG7 27905

Name: SMG7	Sequence: fasta or formatted (1049aa)		NCBI GI: 42476066
Description: SMG-7 homolog isoform 4		Referenced in: RNases and RNA Stability
Other entries for this name: alt prot [1137aa] SMG-7 homolog isoform 1 alt prot [1091aa] SMG-7 homolog isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.6 59 2 C cysteine 1.0 11 1 D aspartate 3.1 33 1 E glutamate 5.6 59 2 F phenylalanine 4.3 45 1 G glycine 4.9 51 2 H histidine 3.0 31 2 I isoleucine 3.6 38 2 K lysine 5.3 56 2 L leucine 9.2 96 2 M methionine 2.1 22 2 N asparagine 4.4 46 2 P proline 9.5 100 3 Q glutamine 8.9 93 4 R arginine 4.0 42 2 S serine 11.8 124 3 T threonine 5.1 54 2 V valine 4.6 48 2 W tryptophan 1.3 14 1 Y tyrosine 2.6 27 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 SMG-7 homolog isoform 4 SMG7 1.000 SMG-7 homolog isoform 2 SMG7 0.990 SMG-7 homolog isoform 1 SMG6 0.032 Smg-6 homolog, nonsense mediated mRNA decay factor ... SMG5 0.025 SMG5 homolog nonsense mediated mRNA decay factor [H... ARID1A 0.017 AT rich interactive domain 1A isoform a ARID1A 0.017 AT rich interactive domain 1A isoform b MED15 0.017 mediator complex subunit 15 isoform b BRD4 0.015 bromodomain-containing protein 4 isoform long ARID1B 0.014 AT rich interactive domain 1B (SWI1-like) isoform 2 ... FLJ22184 0.014 PREDICTED: hypothetical protein FLJ22184 RERE 0.014 atrophin-1 like protein isoform b RERE 0.014 atrophin-1 like protein isoform a RERE 0.014 atrophin-1 like protein isoform a PAXIP1 0.013 PAX interacting protein 1 SF1 0.013 splicing factor 1 isoform 1 POLR2A 0.013 DNA-directed RNA polymerase II A MICAL3 0.013 microtubule associated monoxygenase, calponin and L... SF1 0.012 splicing factor 1 isoform 2 SF3B4 0.012 splicing factor 3b, subunit 4 MED15 0.012 mediator complex subunit 15 isoform a SYN1 0.012 synapsin I isoform Ia EP300 0.012 E1A binding protein p300 CPSF6 0.012 cleavage and polyadenylation specific factor 6, 68 ... MAML2 0.012 mastermind-like 2 MLL2 0.012 myeloid/lymphoid or mixed-lineage leukemia 2 AAK1 0.011 AP2 associated kinase 1 ZNF207 0.011 zinc finger protein 207 isoform b CPEB3 0.011 cytoplasmic polyadenylation element binding protein ... TCERG1 0.011 transcription elongation regulator 1 isoform 2 [Homo... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.