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Search of human proteins with 166795236
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|166795236 tumor-associated calcium signal transducer 2
precursor [Homo sapiens]
(323 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|166795236 tumor-associated calcium signal transducer 2 precur... 654 0.0
gi|218505670 epithelial cell adhesion molecule precursor [Homo s... 296 2e-80
gi|7662036 sparc/osteonectin, cwcv and kazal-like domains proteo... 42 6e-04
gi|115298674 nidogen 1 precursor [Homo sapiens] 39 0.006
gi|4759164 sparc/osteonectin, cwcv and kazal-like domains proteo... 37 0.024
gi|62868217 laminin, beta 3 precursor [Homo sapiens] 36 0.040
gi|62868215 laminin, beta 3 precursor [Homo sapiens] 36 0.040
gi|189083719 laminin, beta 3 precursor [Homo sapiens] 36 0.040
gi|10834982 insulin-like growth factor binding protein 5 [Homo s... 36 0.053
gi|78190498 secreted modular calcium-binding protein 1 isoform 1... 35 0.069
gi|11545873 secreted modular calcium-binding protein 1 isoform 2... 35 0.069
gi|62243068 insulin-like growth factor binding protein 3 isoform... 35 0.12
gi|62243248 insulin-like growth factor binding protein 3 isoform... 35 0.12
gi|11321593 insulin-like growth factor binding protein 6 [Homo s... 35 0.12
gi|93141003 testican 3 isoform 1 [Homo sapiens] 34 0.20
gi|93141001 testican 3 isoform 2 [Homo sapiens] 34 0.20
gi|150170672 thrombospondin, type I, domain containing 7A [Homo ... 33 0.26
gi|52345387 meteorin, glial cell differentiation regulator-like ... 33 0.26
gi|55770862 thyroglobulin [Homo sapiens] 33 0.34
gi|24308277 SPARC related modular calcium binding 2 [Homo sapiens] 33 0.34
gi|55925576 insulin-like growth factor binding protein 2, 36kDa ... 33 0.45
gi|144953895 nidogen 2 precursor [Homo sapiens] 33 0.45
gi|20127446 integrin, beta 5 [Homo sapiens] 32 0.58
gi|9625002 integrin, beta 6 [Homo sapiens] 32 1.00
gi|224589135 RGM domain family, member B [Homo sapiens] 31 1.3
gi|119703755 laminin, beta 2 precursor [Homo sapiens] 31 1.3
gi|145580584 uromodulin-like 1 isoform 1 precursor [Homo sapiens] 31 1.3
gi|145580582 uromodulin-like 1 isoform 2 precursor [Homo sapiens] 31 1.3
gi|62243290 insulin-like growth factor binding protein 4 precurs... 31 1.7
gi|89063265 PREDICTED: similar to MHC class I antigen [Homo sapi... 31 1.7
>gi|166795236 tumor-associated calcium signal transducer 2 precursor
[Homo sapiens]
Length = 323
Score = 654 bits (1688), Expect = 0.0
Identities = 323/323 (100%), Positives = 323/323 (100%)
Query: 1 MARGPGLAPPPLRLPLLLLVLAAVTGHTAAQDNCTCPTNKMTVCSPDGPGGRCQCRALGS 60
MARGPGLAPPPLRLPLLLLVLAAVTGHTAAQDNCTCPTNKMTVCSPDGPGGRCQCRALGS
Sbjct: 1 MARGPGLAPPPLRLPLLLLVLAAVTGHTAAQDNCTCPTNKMTVCSPDGPGGRCQCRALGS 60
Query: 61 GMAVDCSTLTSKCLLLKARMSAPKNARTLVRPSEHALVDNDGLYDPDCDPEGRFKARQCN 120
GMAVDCSTLTSKCLLLKARMSAPKNARTLVRPSEHALVDNDGLYDPDCDPEGRFKARQCN
Sbjct: 61 GMAVDCSTLTSKCLLLKARMSAPKNARTLVRPSEHALVDNDGLYDPDCDPEGRFKARQCN 120
Query: 121 QTSVCWCVNSVGVRRTDKGDLSLRCDELVRTHHILIDLRHRPTAGAFNHSDLDAELRRLF 180
QTSVCWCVNSVGVRRTDKGDLSLRCDELVRTHHILIDLRHRPTAGAFNHSDLDAELRRLF
Sbjct: 121 QTSVCWCVNSVGVRRTDKGDLSLRCDELVRTHHILIDLRHRPTAGAFNHSDLDAELRRLF 180
Query: 181 RERYRLHPKFVAAVHYEQPTIQIELRQNTSQKAAGDVDIGDAAYYFERDIKGESLFQGRG 240
RERYRLHPKFVAAVHYEQPTIQIELRQNTSQKAAGDVDIGDAAYYFERDIKGESLFQGRG
Sbjct: 181 RERYRLHPKFVAAVHYEQPTIQIELRQNTSQKAAGDVDIGDAAYYFERDIKGESLFQGRG 240
Query: 241 GLDLRVRGEPLQVERTLIYYLDEIPPKFSMKRLTAGLIAVIVVVVVALVAGMAVLVITNR 300
GLDLRVRGEPLQVERTLIYYLDEIPPKFSMKRLTAGLIAVIVVVVVALVAGMAVLVITNR
Sbjct: 241 GLDLRVRGEPLQVERTLIYYLDEIPPKFSMKRLTAGLIAVIVVVVVALVAGMAVLVITNR 300
Query: 301 RKSGKYKKVEIKELGELRKEPSL 323
RKSGKYKKVEIKELGELRKEPSL
Sbjct: 301 RKSGKYKKVEIKELGELRKEPSL 323
>gi|218505670 epithelial cell adhesion molecule precursor [Homo
sapiens]
Length = 314
Score = 296 bits (758), Expect = 2e-80
Identities = 156/313 (49%), Positives = 210/313 (67%), Gaps = 6/313 (1%)
Query: 10 PPLRLPLLLLVLAAVTGHTAAQDNCTCPTNKMTVCSPDGPGGRCQCRALGSGMAVDCSTL 69
PP L LL+ AA AAQ+ C C K+ V +CQC ++G+ V CS L
Sbjct: 3 PPQVLAFGLLLAAATATFAAAQEECVCENYKLAVNCFVNNNRQCQCTSVGAQNTVICSKL 62
Query: 70 TSKCLLLKARMSAPKNARTLVRPSEHALVDNDGLYDPDCDPEGRFKARQCNQTSVCWCVN 129
+KCL++KA M+ K R +P E AL +NDGLYDPDCD G FKA+QCN TS+CWCVN
Sbjct: 63 AAKCLVMKAEMNGSKLGRR-AKP-EGALQNNDGLYDPDCDESGLFKAKQCNGTSMCWCVN 120
Query: 130 SVGVRRTDKGDLSLRCDELVRTHHILIDLRHRPTAGAFNHSDLDAELRRLFRERYRLHPK 189
+ GVRRTDK D + C E VRT+ I+I+L+H+ ++ L L++ RY+L PK
Sbjct: 121 TAGVRRTDK-DTEITCSERVRTYWIIIELKHKAREKPYDSKSLRTALQKEITTRYQLDPK 179
Query: 190 FVAAVHYEQPTIQIELRQNTSQKAAGDVDIGDAAYYFERDIKGESLFQGRGGLDLRVRGE 249
F+ ++ YE I I+L QN+SQK DVDI D AYYFE+D+KGESLF + +DL V GE
Sbjct: 180 FITSILYENNVITIDLVQNSSQKTQNDVDIADVAYYFEKDVKGESLFHSK-KMDLTVNGE 238
Query: 250 PLQVE--RTLIYYLDEIPPKFSMKRLTAGLIAVIVVVVVALVAGMAVLVITNRRKSGKYK 307
L ++ +TLIYY+DE P+FSM+ L AG+IAVIVVVV+A+VAG+ VLVI+ +++ KY+
Sbjct: 239 QLDLDPGQTLIYYVDEKAPEFSMQGLKAGVIAVIVVVVIAVVAGIVVLVISRKKRMAKYE 298
Query: 308 KVEIKELGELRKE 320
K EIKE+GE+ +E
Sbjct: 299 KAEIKEMGEMHRE 311
>gi|7662036 sparc/osteonectin, cwcv and kazal-like domains
proteoglycan (testican) 2 isoform 2 [Homo sapiens]
Length = 424
Score = 42.4 bits (98), Expect = 6e-04
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 94 EHALVDNDGLYDPDCDPEGRFKARQCNQTS-VCWCVNSVGVRRT-DKGDLSLRCDELV 149
+ A G++ P CD +G ++ QC+Q+S CWCV+ +G+ T + S CD++V
Sbjct: 323 QEAAKKKPGIFIPSCDEDGYYRKMQCDQSSGDCWCVDQLGLELTGTRTHGSPDCDDIV 380
>gi|115298674 nidogen 1 precursor [Homo sapiens]
Length = 1247
Score = 38.9 bits (89), Expect = 0.006
Identities = 32/114 (28%), Positives = 44/114 (38%), Gaps = 19/114 (16%)
Query: 29 AAQDNCTCPTNKMTVCSPDG-----PGG-RCQCRALGSGMAVDC---STLTSKCLLLKAR 79
A QD C ++ C PD PG CQC+ G C ++C +
Sbjct: 799 ACQDVDECQPSR---CHPDAFCYNTPGSFTCQCKPGYQGDGFRCVPGEVEKTRCQHEREH 855
Query: 80 MSAPKNARTLVRPSEHALVDNDGLYDPDCDPEGRFKARQCN-QTSVCWCVNSVG 132
+ A RP GL+ P+CD G + QC+ T CWCV+ G
Sbjct: 856 ILGAAGATDPQRPIP------PGLFVPECDAHGHYAPTQCHGSTGYCWCVDRDG 903
>gi|4759164 sparc/osteonectin, cwcv and kazal-like domains
proteoglycan 1 precursor [Homo sapiens]
Length = 439
Score = 37.0 bits (84), Expect = 0.024
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 102 GLYDPDCDPEGRFKARQCN-QTSVCWCVNSVG 132
G + P C+ EG +KA QC+ T CWCV+ G
Sbjct: 331 GAFIPRCNEEGYYKATQCHGSTGQCWCVDKYG 362
>gi|62868217 laminin, beta 3 precursor [Homo sapiens]
Length = 1172
Score = 36.2 bits (82), Expect = 0.040
Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 6/102 (5%)
Query: 32 DNCTCPTNKMTVCSPDGPGGRCQCRALGSGMAVDCSTLTSKCLLLKARMSAPKNARTLVR 91
D C +T +P G RC C LGS + C + +CL L + PK +
Sbjct: 411 DLCKPGFTGLTYANPQGCH-RCDCNILGSRRDMPCDEESGRCLCL-PNVVGPKCDQ--CA 466
Query: 92 PSEHALVDNDGLYDPDCDPEGRFKARQCNQ-TSVCWCVNSVG 132
P L G CDP + QCNQ T C C G
Sbjct: 467 PYHWKLASGQGCEPCACDPHNSL-SPQCNQFTGQCPCREGFG 507
>gi|62868215 laminin, beta 3 precursor [Homo sapiens]
Length = 1172
Score = 36.2 bits (82), Expect = 0.040
Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 6/102 (5%)
Query: 32 DNCTCPTNKMTVCSPDGPGGRCQCRALGSGMAVDCSTLTSKCLLLKARMSAPKNARTLVR 91
D C +T +P G RC C LGS + C + +CL L + PK +
Sbjct: 411 DLCKPGFTGLTYANPQGCH-RCDCNILGSRRDMPCDEESGRCLCL-PNVVGPKCDQ--CA 466
Query: 92 PSEHALVDNDGLYDPDCDPEGRFKARQCNQ-TSVCWCVNSVG 132
P L G CDP + QCNQ T C C G
Sbjct: 467 PYHWKLASGQGCEPCACDPHNSL-SPQCNQFTGQCPCREGFG 507
>gi|189083719 laminin, beta 3 precursor [Homo sapiens]
Length = 1172
Score = 36.2 bits (82), Expect = 0.040
Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 6/102 (5%)
Query: 32 DNCTCPTNKMTVCSPDGPGGRCQCRALGSGMAVDCSTLTSKCLLLKARMSAPKNARTLVR 91
D C +T +P G RC C LGS + C + +CL L + PK +
Sbjct: 411 DLCKPGFTGLTYANPQGCH-RCDCNILGSRRDMPCDEESGRCLCL-PNVVGPKCDQ--CA 466
Query: 92 PSEHALVDNDGLYDPDCDPEGRFKARQCNQ-TSVCWCVNSVG 132
P L G CDP + QCNQ T C C G
Sbjct: 467 PYHWKLASGQGCEPCACDPHNSL-SPQCNQFTGQCPCREGFG 507
>gi|10834982 insulin-like growth factor binding protein 5 [Homo
sapiens]
Length = 272
Score = 35.8 bits (81), Expect = 0.053
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
Query: 103 LYDPDCDPEGRFKARQC-----NQTSVCWCVNSVGVR 134
+Y P+CD +G +K +QC + +CWCV+ G++
Sbjct: 214 VYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMK 250
>gi|78190498 secreted modular calcium-binding protein 1 isoform 1
[Homo sapiens]
Length = 435
Score = 35.4 bits (80), Expect = 0.069
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 101 DGLYDPDCDPEGRFKARQCNQ-TSVCWCV 128
+G+ P+C P G +K QC+Q T CWCV
Sbjct: 244 EGIVIPECAPGGLYKPVQCHQSTGYCWCV 272
Score = 33.9 bits (76), Expect = 0.20
Identities = 36/142 (25%), Positives = 51/142 (35%), Gaps = 35/142 (24%)
Query: 14 LPLLLLVLAAVTGHTAA-----------QDNCTCP-TNKMTVCSPDGPG---------GR 52
L L+L+ L+ GH Q N C T +C+ DG +
Sbjct: 14 LLLVLVQLSPARGHRTTGPRFLISDRDPQCNLHCSRTQPKPICASDGRSYESMCEYQRAK 73
Query: 53 CQCRALGSGMAVDCSTL-TSKCLLLKARMSAPKNARTLVRPSEHALVDNDGLYDPDCDPE 111
C+ LG C SKC L +A+ E A + ++ P+C +
Sbjct: 74 CRDPTLGVVHRGRCKDAGQSKCRLERAQAL------------EQAKKPQEAVFVPECGED 121
Query: 112 GRFKARQCN-QTSVCWCVNSVG 132
G F QC+ T CWCV G
Sbjct: 122 GSFTQVQCHTYTGYCWCVTPDG 143
>gi|11545873 secreted modular calcium-binding protein 1 isoform 2
[Homo sapiens]
Length = 434
Score = 35.4 bits (80), Expect = 0.069
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 101 DGLYDPDCDPEGRFKARQCNQ-TSVCWCV 128
+G+ P+C P G +K QC+Q T CWCV
Sbjct: 244 EGIVIPECAPGGLYKPVQCHQSTGYCWCV 272
Score = 33.9 bits (76), Expect = 0.20
Identities = 36/142 (25%), Positives = 51/142 (35%), Gaps = 35/142 (24%)
Query: 14 LPLLLLVLAAVTGHTAA-----------QDNCTCP-TNKMTVCSPDGPG---------GR 52
L L+L+ L+ GH Q N C T +C+ DG +
Sbjct: 14 LLLVLVQLSPARGHRTTGPRFLISDRDPQCNLHCSRTQPKPICASDGRSYESMCEYQRAK 73
Query: 53 CQCRALGSGMAVDCSTL-TSKCLLLKARMSAPKNARTLVRPSEHALVDNDGLYDPDCDPE 111
C+ LG C SKC L +A+ E A + ++ P+C +
Sbjct: 74 CRDPTLGVVHRGRCKDAGQSKCRLERAQAL------------EQAKKPQEAVFVPECGED 121
Query: 112 GRFKARQCN-QTSVCWCVNSVG 132
G F QC+ T CWCV G
Sbjct: 122 GSFTQVQCHTYTGYCWCVTPDG 143
>gi|62243068 insulin-like growth factor binding protein 3 isoform b
precursor [Homo sapiens]
Length = 291
Score = 34.7 bits (78), Expect = 0.12
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 102 GLYDPDCDPEGRFKARQC-----NQTSVCWCVNSVG---VRRTDKGDLSLRC 145
G++ P+CD +G +K +QC + CWCV+ G T KG + C
Sbjct: 234 GVHIPNCDKKGFYKKKQCRPSKGRKRGFCWCVDKYGQPLPGYTTKGKEDVHC 285
>gi|62243248 insulin-like growth factor binding protein 3 isoform a
precursor [Homo sapiens]
Length = 297
Score = 34.7 bits (78), Expect = 0.12
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 102 GLYDPDCDPEGRFKARQC-----NQTSVCWCVNSVG---VRRTDKGDLSLRC 145
G++ P+CD +G +K +QC + CWCV+ G T KG + C
Sbjct: 240 GVHIPNCDKKGFYKKKQCRPSKGRKRGFCWCVDKYGQPLPGYTTKGKEDVHC 291
>gi|11321593 insulin-like growth factor binding protein 6 [Homo
sapiens]
Length = 240
Score = 34.7 bits (78), Expect = 0.12
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 103 LYDPDCDPEGRFKARQCNQT-----SVCWCVNSVG 132
LY P+CD G ++ RQC + CWCV+ +G
Sbjct: 185 LYVPNCDHRGFYRKRQCRSSQGQRRGPCWCVDRMG 219
>gi|93141003 testican 3 isoform 1 [Homo sapiens]
Length = 433
Score = 33.9 bits (76), Expect = 0.20
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 102 GLYDPDCDPEGRFKARQCN-QTSVCWCVNSVG 132
G Y P CD +G +K QC+ CWCV+ G
Sbjct: 332 GQYIPLCDEDGYYKPTQCHGSVGQCWCVDRYG 363
>gi|93141001 testican 3 isoform 2 [Homo sapiens]
Length = 436
Score = 33.9 bits (76), Expect = 0.20
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 102 GLYDPDCDPEGRFKARQCN-QTSVCWCVNSVG 132
G Y P CD +G +K QC+ CWCV+ G
Sbjct: 335 GQYIPLCDEDGYYKPTQCHGSVGQCWCVDRYG 366
>gi|150170672 thrombospondin, type I, domain containing 7A [Homo
sapiens]
Length = 1657
Score = 33.5 bits (75), Expect = 0.26
Identities = 24/56 (42%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 7 LAPPPLRLPLLLLVLAAV-TGHTAAQDNCTCPTNKMTVCSPDGPGGRCQCRALGSG 61
L P PL LPLLLL+L G AAQ PT + GP GRC G G
Sbjct: 25 LLPLPLPLPLLLLLLLRPGAGRAAAQGEAEAPTLYLW---KTGPWGRCMGDECGPG 77
>gi|52345387 meteorin, glial cell differentiation regulator-like
[Homo sapiens]
Length = 311
Score = 33.5 bits (75), Expect = 0.26
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 3 RGPGLAPPPLRLPLLLLVLAAVTGHTAAQ---DNCTCPTNKMT 42
R P PPP LPLLLL+LA + G AQ D C+ + +T
Sbjct: 18 RPPAPGPPPPPLPLLLLLLAGLLGGAGAQYSSDRCSWKGSGLT 60
>gi|55770862 thyroglobulin [Homo sapiens]
Length = 2768
Score = 33.1 bits (74), Expect = 0.34
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 104 YDPDCDPEGRFKARQCNQTSVCWCVNSVG 132
Y P C G ++A QC CWCV++ G
Sbjct: 315 YVPSCRRNGDYQAVQCQTEGPCWCVDAQG 343
Score = 32.0 bits (71), Expect = 0.76
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 103 LYDPDCDPEGRFKARQCNQTSVCWCVNSVG 132
L+ P C EG ++ QC + CWCVNS G
Sbjct: 615 LFVPSCTTEGSYEDVQCF-SGECWCVNSWG 643
Score = 31.6 bits (70), Expect = 1.00
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 102 GLYDPDCDPEGRFKARQCNQ-TSVCWCVNSVG 132
G Y P CD G ++ QC+ T CWCV+ G
Sbjct: 1025 GPYMPQCDAFGSWEPVQCHAGTGHCWCVDEKG 1056
Score = 30.8 bits (68), Expect = 1.7
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 104 YDPDCDPEGRFKARQC-NQTSVCWCVNSVG 132
Y P C +G F+ QC N CWCV + G
Sbjct: 48 YVPQCAEDGSFQTVQCQNDGRSCWCVGANG 77
>gi|24308277 SPARC related modular calcium binding 2 [Homo sapiens]
Length = 457
Score = 33.1 bits (74), Expect = 0.34
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 15/85 (17%)
Query: 63 AVDCSTLTSKCLLLKARMSAPK-------NARTLVR-------PSEHALVDNDGLYDPDC 108
A D T S+C +A+ P+ N + + R E A + ++ P+C
Sbjct: 54 ASDGRTFLSRCEFQRAKCKDPQLEIAYRGNCKDVSRCVAERKYTQEQARKEFQQVFIPEC 113
Query: 109 DPEGRFKARQCNQ-TSVCWCVNSVG 132
+ +G + QC+ T CWCV G
Sbjct: 114 NDDGTYSQVQCHSYTGYCWCVTPNG 138
Score = 32.3 bits (72), Expect = 0.58
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 100 NDGLYDPDCDPEGRFKARQCN-QTSVCWCVNSVGVRRTDKGDLSL----RCDELVRTH 152
ND + P+C G +K QC+ T CWCV V R G + +CD R H
Sbjct: 243 NDNVVIPECAHGGLYKPVQCHPSTGYCWCV-LVDTGRPIPGTSTRYEQPKCDNTARAH 299
>gi|55925576 insulin-like growth factor binding protein 2, 36kDa
[Homo sapiens]
Length = 328
Score = 32.7 bits (73), Expect = 0.45
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 9/43 (20%)
Query: 92 PSEHALVDNDGLYDPDCDPEGRFKARQC-----NQTSVCWCVN 129
P EH L+ P+CD G + +QC Q CWCVN
Sbjct: 252 PLEHLY----SLHIPNCDKHGLYNLKQCKMSLNGQRGECWCVN 290
>gi|144953895 nidogen 2 precursor [Homo sapiens]
Length = 1375
Score = 32.7 bits (73), Expect = 0.45
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 106 PDCDPEGRFKARQCN-QTSVCWCVNSVG 132
P CD +G F QC+ T CWCV+ G
Sbjct: 961 PQCDEQGNFLPLQCHGSTGFCWCVDPDG 988
Score = 32.3 bits (72), Expect = 0.58
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 101 DGLYDPDCDPEGRFKARQCN-QTSVCWCVNSVG 132
D Y P CD G F QC+ ++ CWCV+ G
Sbjct: 1036 DDQYVPQCDDLGHFIPLQCHGKSDFCWCVDKDG 1068
>gi|20127446 integrin, beta 5 [Homo sapiens]
Length = 799
Score = 32.3 bits (72), Expect = 0.58
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 32 DNCTCPTNKMTVCSPDGP--GGRCQCRALGSGMAVDCSTLTSKC 73
DN +C NK +CS G G C+C A G +CST S C
Sbjct: 551 DNFSCARNKGVLCSGHGECHCGECKCHAGYIGDNCNCSTDISTC 594
>gi|9625002 integrin, beta 6 [Homo sapiens]
Length = 788
Score = 31.6 bits (70), Expect = 1.00
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 32 DNCTCPTNKMTVCSPDGPG--GRCQCRALGSGMAVDCSTLTSKCL 74
DN +C +K +C +G G C CR+ +G +C+T T C+
Sbjct: 540 DNFSCVRHKGLLCGGNGDCDCGECVCRSGWTGEYCNCTTSTDSCV 584
>gi|224589135 RGM domain family, member B [Homo sapiens]
Length = 478
Score = 31.2 bits (69), Expect = 1.3
Identities = 17/40 (42%), Positives = 18/40 (45%)
Query: 3 RGPGLAPPPLRLPLLLLVLAAVTGHTAAQDNCTCPTNKMT 42
R PGL PPPL L LLLL + Q C K T
Sbjct: 62 RSPGLCPPPLELLLLLLFSLGLLHAGDCQQPAQCRIQKCT 101
>gi|119703755 laminin, beta 2 precursor [Homo sapiens]
Length = 1798
Score = 31.2 bits (69), Expect = 1.3
Identities = 26/91 (28%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 46 PDGPGGRCQ-CRALGSGMAVD---CSTLTSKCLLLKARMSAPKNARTLVRPSEHALVDND 101
P PGGRCQ C G+ +D C T +CL P A +P H
Sbjct: 976 PSRPGGRCQLCECSGNIDPMDPDACDPHTGQCLRCLHHTEGPHCAH--CKPGFHGQAARQ 1033
Query: 102 GLYDPDCDPEGRFKARQCNQTSVCWCVNSVG 132
+ C+ G +QC C C S G
Sbjct: 1034 SCHRCTCNLLGT-NPQQCPSPDQCHCDPSSG 1063
>gi|145580584 uromodulin-like 1 isoform 1 precursor [Homo sapiens]
Length = 1318
Score = 31.2 bits (69), Expect = 1.3
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 266 PKFSMKRLTAGLIAVIVVVVVALVAGMAVLVITN-RRKSGKY 306
P + L AG + +IVV + LVAG A L+I +R +G+Y
Sbjct: 1261 PPHAEAGLGAGYVVLIVVAIFVLVAGTATLLIVRYQRMNGRY 1302
>gi|145580582 uromodulin-like 1 isoform 2 precursor [Homo sapiens]
Length = 1446
Score = 31.2 bits (69), Expect = 1.3
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 266 PKFSMKRLTAGLIAVIVVVVVALVAGMAVLVITN-RRKSGKY 306
P + L AG + +IVV + LVAG A L+I +R +G+Y
Sbjct: 1389 PPHAEAGLGAGYVVLIVVAIFVLVAGTATLLIVRYQRMNGRY 1430
>gi|62243290 insulin-like growth factor binding protein 4 precursor
[Homo sapiens]
Length = 258
Score = 30.8 bits (68), Expect = 1.7
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Query: 106 PDCDPEGRFKARQCN-----QTSVCWCVN 129
P+CD G F +QC+ Q CWCV+
Sbjct: 202 PNCDRNGNFHPKQCHPALDGQRGKCWCVD 230
>gi|89063265 PREDICTED: similar to MHC class I antigen [Homo
sapiens]
Length = 366
Score = 30.8 bits (68), Expect = 1.7
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 9/61 (14%)
Query: 245 RVRGEPLQVERTLIYYLDEIPPKFSMKRLTAGLIAVIVVVVVALVAGMAVLVITNRRKSG 304
RV+ E LQ TL + PP+ S L G+I +V++VVALVAG VI +++SG
Sbjct: 297 RVQHEGLQEPLTLRWE----PPQTSF--LIMGIIVGLVLLVVALVAG---AVIWRKKRSG 347
Query: 305 K 305
+
Sbjct: 348 R 348
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,033,022
Number of Sequences: 37866
Number of extensions: 590679
Number of successful extensions: 1616
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 1565
Number of HSP's gapped (non-prelim): 92
length of query: 323
length of database: 18,247,518
effective HSP length: 102
effective length of query: 221
effective length of database: 14,385,186
effective search space: 3179126106
effective search space used: 3179126106
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.