Guide to the Human Genome
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Name: RGMB Sequence: fasta or formatted (478aa) NCBI GI: 224589135
Description:

RGM domain family, member B

Referenced in:

Iron, Copper, and Arsenic Metabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         43           6
 C cysteine            3.8         18           1
 D aspartate           5.4         26           2
 E glutamate           4.4         21           2
 F phenylalanine       3.3         16           1
 G glycine             7.3         35           2
 H histidine           3.8         18           2
 I isoleucine          3.3         16           2
 K lysine              3.3         16           2
 L leucine             9.4         45           6
 M methionine          1.5          7           1
 N asparagine          3.1         15           2
 P proline             7.5         36           3
 Q glutamine           4.2         20           2
 R arginine            6.1         29           2
 S serine              8.4         40           2
 T threonine           6.9         33           2
 V valine              5.9         28           2
 W tryptophan          0.8          4           1
 Y tyrosine            2.5         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RGM domain family, member B 
RGMA                  0.388   RGM domain family, member A 
HFE2                  0.315   hemojuvelin isoform a precursor 
HFE2                  0.251   hemojuvelin isoform b 
HFE2                  0.146   hemojuvelin isoform c 
HFE2                  0.146   hemojuvelin isoform c 
LOC729580             0.020   PREDICTED: hypothetical protein 
LOC729580             0.020   PREDICTED: hypothetical protein 
LOC729580             0.020   PREDICTED: hypothetical protein 
SAMD1                 0.016   sterile alpha motif domain containing 1 
ZBTB45                0.016   zinc finger and BTB domain containing 45 
LTBP1                 0.016   latent transforming growth factor beta binding prote...
LOC100129203          0.016   PREDICTED: similar to mCG50504 
LOC100127930          0.015   PREDICTED: hypothetical protein 
LOC646509             0.015   PREDICTED: hypothetical protein 
DGKK                  0.015   diacylglycerol kinase kappa 
SYNJ1                 0.015   synaptojanin 1 isoform a 
SYNJ1                 0.015   synaptojanin 1 isoform b 
WNK4                  0.012   WNK lysine deficient protein kinase 4 
BPTF                  0.012   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.012   bromodomain PHD finger transcription factor isoform ...
WASL                  0.012   Wiskott-Aldrich syndrome gene-like protein 
USP51                 0.012   ubiquitin specific protease 51 
POU3F3                0.012   POU class 3 homeobox 3 
ADRB1                 0.011   beta-1-adrenergic receptor 
LOC100289743          0.011   PREDICTED: hypothetical protein XP_002348163 
CREBBP                0.011   CREB binding protein isoform b 
CREBBP                0.011   CREB binding protein isoform a 
SYNPO                 0.011   synaptopodin isoform A 
HOXB4                 0.011   homeobox B4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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