SYNC 6914

Name: SYNC	Sequence: fasta or formatted (482aa)		NCBI GI: 166706887
Description: syncoilin, intermediate filament 1 isoform 1		Referenced in: Synapses
Other entries for this name: alt prot [476aa] syncoilin, intermediate filament 1 isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.9 43 2 C cysteine 0.8 4 1 D aspartate 3.9 19 1 E glutamate 16.8 81 3 F phenylalanine 1.7 8 1 G glycine 3.7 18 2 H histidine 1.2 6 1 I isoleucine 1.9 9 1 K lysine 4.1 20 1 L leucine 12.4 60 2 M methionine 1.7 8 1 N asparagine 2.7 13 1 P proline 4.6 22 2 Q glutamine 11.4 55 3 R arginine 7.5 36 2 S serine 4.8 23 2 T threonine 4.1 20 2 V valine 5.4 26 2 W tryptophan 0.0 0 0 Y tyrosine 2.3 11 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 syncoilin, intermediate filament 1 isoform 1 SYNC 0.942 syncoilin, intermediate filament 1 isoform 2 INA 0.086 internexin neuronal intermediate filament protein, a... GFAP 0.078 glial fibrillary acidic protein isoform 2 GFAP 0.078 glial fibrillary acidic protein isoform 1 PRPH 0.076 peripherin VIM 0.073 vimentin DES 0.067 desmin NEFH 0.062 neurofilament, heavy polypeptide 200kDa NEFM 0.061 neurofilament, medium polypeptide 150kDa isoform 1 ... NEFL 0.060 neurofilament, light polypeptide 68kDa ZNF853 0.058 zinc finger protein 853 MYH11 0.057 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... MYH11 0.057 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... MYH11 0.054 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... MYH11 0.054 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... KRT13 0.054 keratin 13 isoform a KRT8 0.054 keratin 8 KRT31 0.054 keratin 31 KRT33B 0.053 type I hair keratin 3B KRT75 0.053 keratin 75 KRT73 0.052 keratin 73 KRT13 0.052 keratin 13 isoform b KRT5 0.052 keratin 5 CEP250 0.051 centrosomal protein 2 LOC100133758 0.051 PREDICTED: hypothetical protein, partial KRT33A 0.051 keratin 33A KRT7 0.050 keratin 7 KRT34 0.050 keratin 34 CGNL1 0.050 cingulin-like 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.