SYNC 23537

Name: SYNC	Sequence: fasta or formatted (476aa)		NCBI GI: 239787821
Description: syncoilin, intermediate filament 1 isoform 2		Referenced in: Synapses
Other entries for this name: alt prot [482aa] syncoilin, intermediate filament 1 isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.4 40 2 C cysteine 1.3 6 1 D aspartate 4.0 19 1 E glutamate 17.0 81 3 F phenylalanine 1.9 9 1 G glycine 3.6 17 2 H histidine 1.5 7 1 I isoleucine 2.3 11 1 K lysine 4.4 21 1 L leucine 12.4 59 2 M methionine 1.3 6 1 N asparagine 3.2 15 1 P proline 4.4 21 2 Q glutamine 10.9 52 3 R arginine 7.6 36 2 S serine 4.2 20 2 T threonine 4.0 19 2 V valine 5.3 25 2 W tryptophan 0.0 0 0 Y tyrosine 2.5 12 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 syncoilin, intermediate filament 1 isoform 2 SYNC 0.946 syncoilin, intermediate filament 1 isoform 1 INA 0.086 internexin neuronal intermediate filament protein, a... GFAP 0.080 glial fibrillary acidic protein isoform 2 GFAP 0.080 glial fibrillary acidic protein isoform 1 PRPH 0.076 peripherin VIM 0.073 vimentin DES 0.069 desmin NEFH 0.063 neurofilament, heavy polypeptide 200kDa NEFM 0.062 neurofilament, medium polypeptide 150kDa isoform 1 ... NEFL 0.060 neurofilament, light polypeptide 68kDa ZNF853 0.059 zinc finger protein 853 KRT31 0.054 keratin 31 KRT8 0.054 keratin 8 KRT75 0.054 keratin 75 KRT73 0.053 keratin 73 MYH11 0.053 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... MYH11 0.053 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... MYH11 0.053 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... MYH11 0.053 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... KRT33B 0.053 type I hair keratin 3B KRT5 0.052 keratin 5 KRT33A 0.052 keratin 33A CROCC 0.052 ciliary rootlet coiled-coil KRT13 0.052 keratin 13 isoform b KRT13 0.052 keratin 13 isoform a PLEC1 0.052 plectin 1 isoform 11 PLEC1 0.052 plectin 1 isoform 10 PLEC1 0.052 plectin 1 isoform 8 PLEC1 0.052 plectin 1 isoform 7 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.