Guide to the Human Genome
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Name: CGNL1 Sequence: fasta or formatted (1302aa) NCBI GI: 31982906
Description:

cingulin-like 1

Referenced in:

Gap Junctions and Tight Junctions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         75           2
 C cysteine            0.8         10           1
 D aspartate           5.6         73           5
 E glutamate          12.8        167           3
 F phenylalanine       1.4         18           1
 G glycine             4.1         54           2
 H histidine           2.0         26           1
 I isoleucine          2.8         36           2
 K lysine              8.0        104           3
 L leucine            11.6        151           2
 M methionine          1.8         24           1
 N asparagine          4.7         61           2
 P proline             3.8         49           3
 Q glutamine           8.0        104           2
 R arginine            7.8        101           2
 S serine              8.7        113           5
 T threonine           4.5         59           2
 V valine              4.1         54           2
 W tryptophan          0.2          3           1
 Y tyrosine            1.5         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cingulin-like 1 
CGN                   0.177   cingulin 
MYH11                 0.095   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.095   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.095   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.095   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH9                  0.095   myosin, heavy polypeptide 9, non-muscle 
MYH10                 0.094   myosin, heavy polypeptide 10, non-muscle 
MYH14                 0.076   myosin, heavy chain 14 isoform 1 
MYH14                 0.076   myosin, heavy chain 14 isoform 2 
MYH14                 0.076   myosin, heavy chain 14 isoform 3 
MYH8                  0.068   myosin, heavy chain 8, skeletal muscle, perinatal [...
MYH2                  0.067   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.067   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH6                  0.066   myosin heavy chain 6 
MYH4                  0.066   myosin, heavy polypeptide 4, skeletal muscle 
MYH7                  0.066   myosin, heavy chain 7, cardiac muscle, beta 
MYH1                  0.065   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH13                 0.064   myosin, heavy polypeptide 13, skeletal muscle [Homo...
MYH3                  0.064   myosin, heavy chain 3, skeletal muscle, embryonic [H...
MYH15                 0.060   myosin, heavy polypeptide 15 
MYH7B                 0.058   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
CEP110                0.052   centrosomal protein 110kDa 
TCHH                  0.051   trichohyalin 
MYO18A                0.050   myosin 18A isoform a 
GOLGA4                0.049   golgi autoantigen, golgin subfamily a, 4 
EEA1                  0.049   early endosome antigen 1, 162kD 
PLEC1                 0.049   plectin 1 isoform 11 
PLEC1                 0.049   plectin 1 isoform 10 
PLEC1                 0.049   plectin 1 isoform 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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