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Search of human proteins with 166063983
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|166063983 interleukin 17 receptor D [Homo sapiens]
(739 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|166063983 interleukin 17 receptor D [Homo sapiens] 1523 0.0
gi|23238208 interleukin 17A receptor precursor [Homo sapiens] 101 3e-21
gi|27477074 interleukin 17B receptor precursor [Homo sapiens] 51 4e-06
gi|145699105 connexin40.1 [Homo sapiens] 40 0.010
gi|31543148 hypothetical protein LOC79173 [Homo sapiens] 39 0.017
gi|193083172 nuclear assembly factor 1 homolog isoform b [Homo s... 36 0.11
gi|193083157 nuclear assembly factor 1 homolog isoform a [Homo s... 36 0.11
gi|10863903 thyroid hormone receptor interactor 12 [Homo sapiens] 35 0.25
gi|21237745 mitogen-activated protein kinase 9 isoform JNK2 beta... 34 0.56
gi|21237736 mitogen-activated protein kinase 9 isoform JNK2 alph... 34 0.56
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 33 0.95
gi|223646113 Sp9 transcription factor homolog [Homo sapiens] 32 1.6
gi|11415052 retinoid X receptor, beta [Homo sapiens] 32 1.6
gi|21493022 A kinase (PRKA) anchor protein 12 isoform 1 [Homo sa... 32 1.6
gi|21493024 A kinase (PRKA) anchor protein 12 isoform 2 [Homo sa... 32 1.6
gi|41152107 ubiquitin-like 7 [Homo sapiens] 32 2.1
gi|14249682 ubiquitin-like 7 [Homo sapiens] 32 2.1
gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens] 32 2.1
gi|13375981 zinc finger protein 385D [Homo sapiens] 32 2.1
gi|46592991 GRIP1 associated protein 1 isoform 1 [Homo sapiens] 32 2.8
gi|87578392 microtubule-associated protein 2 isoform 2 [Homo sap... 31 3.6
gi|87578255 microtubule-associated protein 2 isoform 4 [Homo sap... 31 3.6
gi|170932526 nuclear receptor coactivator 7 isoform 2 [Homo sapi... 31 3.6
gi|87578396 microtubule-associated protein 2 isoform 1 [Homo sap... 31 4.7
gi|28559039 mediator complex subunit 1 [Homo sapiens] 31 4.7
gi|5174573 myeloid/lymphoid or mixed-lineage leukemia trithorax ... 31 4.7
gi|12669915 E2F transcription factor 4 [Homo sapiens] 31 4.7
gi|20070163 voltage-dependent calcium channel alpha 1G subunit i... 30 6.2
gi|4507255 signal transducer and activator of transcription 4 [H... 30 6.2
gi|38505292 voltage-dependent calcium channel alpha 1G subunit i... 30 6.2
>gi|166063983 interleukin 17 receptor D [Homo sapiens]
Length = 739
Score = 1523 bits (3942), Expect = 0.0
Identities = 739/739 (100%), Positives = 739/739 (100%)
Query: 1 MAPWLQLCSVFFTVNACLNGSQLAVAAGGSGRARGADTCGWRGVGPASRNSGLYNITFKY 60
MAPWLQLCSVFFTVNACLNGSQLAVAAGGSGRARGADTCGWRGVGPASRNSGLYNITFKY
Sbjct: 1 MAPWLQLCSVFFTVNACLNGSQLAVAAGGSGRARGADTCGWRGVGPASRNSGLYNITFKY 60
Query: 61 DNCTTYLNPVGKHVIADAQNITISQYACHDQVAVTILWSPGALGIEFLKGFRVILEELKS 120
DNCTTYLNPVGKHVIADAQNITISQYACHDQVAVTILWSPGALGIEFLKGFRVILEELKS
Sbjct: 61 DNCTTYLNPVGKHVIADAQNITISQYACHDQVAVTILWSPGALGIEFLKGFRVILEELKS 120
Query: 121 EGRQCQQLILKDPKQLNSSFKRTGMESQPFLNMKFETDYFVKVVPFPSIKNESNYHPFFF 180
EGRQCQQLILKDPKQLNSSFKRTGMESQPFLNMKFETDYFVKVVPFPSIKNESNYHPFFF
Sbjct: 121 EGRQCQQLILKDPKQLNSSFKRTGMESQPFLNMKFETDYFVKVVPFPSIKNESNYHPFFF 180
Query: 181 RTRACDLLLQPDNLACKPFWKPRNLNISQHGSDMQVSFDHAPHNFGFRFFYLHYKLKHEG 240
RTRACDLLLQPDNLACKPFWKPRNLNISQHGSDMQVSFDHAPHNFGFRFFYLHYKLKHEG
Sbjct: 181 RTRACDLLLQPDNLACKPFWKPRNLNISQHGSDMQVSFDHAPHNFGFRFFYLHYKLKHEG 240
Query: 241 PFKRKTCKQEQTTETTSCLLQNVSPGDYIIELVDDTNTTRKVMHYALKPVHSPWAGPIRA 300
PFKRKTCKQEQTTETTSCLLQNVSPGDYIIELVDDTNTTRKVMHYALKPVHSPWAGPIRA
Sbjct: 241 PFKRKTCKQEQTTETTSCLLQNVSPGDYIIELVDDTNTTRKVMHYALKPVHSPWAGPIRA 300
Query: 301 VAITVPLVVISAFATLFTVMCRKKQQENIYSHLDEESSESSTYTAALPRERLRPRPKVFL 360
VAITVPLVVISAFATLFTVMCRKKQQENIYSHLDEESSESSTYTAALPRERLRPRPKVFL
Sbjct: 301 VAITVPLVVISAFATLFTVMCRKKQQENIYSHLDEESSESSTYTAALPRERLRPRPKVFL 360
Query: 361 CYSSKDGQNHMNVVQCFAYFLQDFCGCEVALDLWEDFSLCREGQREWVIQKIHESQFIIV 420
CYSSKDGQNHMNVVQCFAYFLQDFCGCEVALDLWEDFSLCREGQREWVIQKIHESQFIIV
Sbjct: 361 CYSSKDGQNHMNVVQCFAYFLQDFCGCEVALDLWEDFSLCREGQREWVIQKIHESQFIIV 420
Query: 421 VCSKGMKYFVDKKNYKHKGGGRGSGKGELFLVAVSAIAEKLRQAKQSSSAALSKFIAVYF 480
VCSKGMKYFVDKKNYKHKGGGRGSGKGELFLVAVSAIAEKLRQAKQSSSAALSKFIAVYF
Sbjct: 421 VCSKGMKYFVDKKNYKHKGGGRGSGKGELFLVAVSAIAEKLRQAKQSSSAALSKFIAVYF 480
Query: 481 DYSCEGDVPGILDLSTKYRLMDNLPQLCSHLHSRDHGLQEPGQHTRQGSRRNYFRSKSGR 540
DYSCEGDVPGILDLSTKYRLMDNLPQLCSHLHSRDHGLQEPGQHTRQGSRRNYFRSKSGR
Sbjct: 481 DYSCEGDVPGILDLSTKYRLMDNLPQLCSHLHSRDHGLQEPGQHTRQGSRRNYFRSKSGR 540
Query: 541 SLYVAICNMHQFIDEEPDWFEKQFVPFHPPPLRYREPVLEKFDSGLVLNDVMCKPGPESD 600
SLYVAICNMHQFIDEEPDWFEKQFVPFHPPPLRYREPVLEKFDSGLVLNDVMCKPGPESD
Sbjct: 541 SLYVAICNMHQFIDEEPDWFEKQFVPFHPPPLRYREPVLEKFDSGLVLNDVMCKPGPESD 600
Query: 601 FCLKVEAAVLGATGPADSQHESQHGGLDQDGEARPALDGSAALQPLLHTVKAGSPSDMPR 660
FCLKVEAAVLGATGPADSQHESQHGGLDQDGEARPALDGSAALQPLLHTVKAGSPSDMPR
Sbjct: 601 FCLKVEAAVLGATGPADSQHESQHGGLDQDGEARPALDGSAALQPLLHTVKAGSPSDMPR 660
Query: 661 DSGIYDSSVPSSELSLPLMEGLSTDQTETSSLTESVSSSSGLGEEEPPALPSKLLSSGSC 720
DSGIYDSSVPSSELSLPLMEGLSTDQTETSSLTESVSSSSGLGEEEPPALPSKLLSSGSC
Sbjct: 661 DSGIYDSSVPSSELSLPLMEGLSTDQTETSSLTESVSSSSGLGEEEPPALPSKLLSSGSC 720
Query: 721 KADLGCRSYTDELHAVAPL 739
KADLGCRSYTDELHAVAPL
Sbjct: 721 KADLGCRSYTDELHAVAPL 739
>gi|23238208 interleukin 17A receptor precursor [Homo sapiens]
Length = 866
Score = 101 bits (251), Expect = 3e-21
Identities = 125/443 (28%), Positives = 185/443 (41%), Gaps = 78/443 (17%)
Query: 335 EESSESSTYTAALPRERLRPRP----KVFLCYSSKDGQNHMNVVQCFAYFLQDFCGCEVA 390
E+ S+ + YT LP L P P KV++ YS+ D +++VV FA FL CG EVA
Sbjct: 353 EKYSDDTKYTDGLPAADLIPPPLKPRKVWIIYSA-DHPLYVDVVLKFAQFLLTACGTEVA 411
Query: 391 LDLWEDFSLCREGQREWV----IQKIHESQFIIVVCSKGMKYFVDKKNYKHKGGG----- 441
LDL E+ ++ G WV + + + IIV+CS+G + K G G
Sbjct: 412 LDLLEEQAISEAGVMTWVGRQKQEMVESNSKIIVLCSRGTR----AKWQALLGRGAPVRL 467
Query: 442 ---RGSGKGELFLVAVSAIAEKLRQAKQSSSAALSKFIAVYF-DYSCEGDVPGILDLSTK 497
G G+LF A++ I ++ A ++ YF + SC+GDVP + + +
Sbjct: 468 RCDHGKPVGDLFTAAMNMILPDFKR-----PACFGTYVVCYFSEVSCDGDVPDLFGAAPR 522
Query: 498 YRLMDNLPQLCSHLHSRDHGLQEPGQHTRQG--SRRNYFRSKSGRSLYVAICNMHQFIDE 555
Y LMD ++ + +D + +PG+ R G S NY RS GR L A+ +
Sbjct: 523 YPLMDRFEEV--YFRIQDLEMFQPGRMHRVGELSGDNYLRSPGGRQLRAALDRFRDWQVR 580
Query: 556 EPDWFE--------KQFVPFHPPPLRYREPVLEKFDSGLVLNDVMCKPGPESDFCLKVEA 607
PDWFE Q P + + EP+L +G+V + + P S CL ++
Sbjct: 581 CPDWFECENLYSADDQDAPSLDEEV-FEEPLLPP-GTGIVKRAPLVRE-PGSQACLAIDP 637
Query: 608 AVLGATGPADSQHE--------------------SQHGGLDQDGEARPALDGSAALQPLL 647
V G A ++ E ++ G L E P DG+A L
Sbjct: 638 LVGEEGGAAVAKLEPHLQPRGQPAPQPLHTLVLAAEEGALVAAVEPGPLADGAAVRLALA 697
Query: 648 HTVKA----GSPSDMPRDSGIYDSSVPSSELSLPLMEGLSTDQTETSSLTESVSSSSGLG 703
+A GSP R+S ++ +P PL G ST L E V
Sbjct: 698 GEGEACPLLGSPG-AGRNSVLF---LPVDPEDSPL--GSSTPMASPDLLPEDVR------ 745
Query: 704 EEEPPALPSKLLSSGSCKADLGC 726
E + S S SC+A GC
Sbjct: 746 EHLEGLMLSLFEQSLSCQAQGGC 768
>gi|27477074 interleukin 17B receptor precursor [Homo sapiens]
Length = 502
Score = 50.8 bits (120), Expect = 4e-06
Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 8/160 (5%)
Query: 352 LRPRPKVFLCYSSKDGQNHMNVVQCFAYFLQDFCGCEVALDLWEDFSLCREGQREWVIQK 411
L P KV + Y S+ +H + F FLQ+ C EV L+ W+ + G +W+ +
Sbjct: 328 LLPPIKVLVVYPSEICFHH--TICYFTEFLQNHCRSEVILEKWQKKKIAEMGPVQWLATQ 385
Query: 412 IHESQFIIVVCSKGMKYFVDKKNYKHKGGGRGSGKGELFLVAVSAIAEKLRQAKQSSSAA 471
+ ++ + S + D K +G + + +LF +A + LR S
Sbjct: 386 KKAADKVVFLLSNDVNSVCDGTCGKSEGSPSENSQ-DLFPLAFNLFCSDLR-----SQIH 439
Query: 472 LSKFIAVYFDYSCEGDVPGILDLSTKYRLMDNLPQLCSHL 511
L K++ VYF D L + KY LM + C+ L
Sbjct: 440 LHKYVVVYFREIDTKDDYNALSVCPKYHLMKDATAFCAEL 479
>gi|145699105 connexin40.1 [Homo sapiens]
Length = 370
Score = 39.7 bits (91), Expect = 0.010
Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 25/149 (16%)
Query: 586 LVLNDVMC--------KPGPESDFCLKVEAAVLGATGPADSQHESQHGGLDQDGEARPAL 637
L L D++C +PGP + ++ ++ GA+G A+ + + GG +++G PA
Sbjct: 211 LGLADLVCSLRRRMRRRPGPPTSPSIRKQS---GASGHAEGRRTDEEGGREEEG--APAP 265
Query: 638 DGSAALQPLLHTVKAGSPSDMPRDSGIYDSSVP---SSELSLPLMEGLSTDQTETSSLTE 694
G+ A AGSP R SG + +P SE++ E L Q E
Sbjct: 266 PGARA-----GGEGAGSPRRTSRVSG--HTKIPDEDESEVTSSASEKLGR-QPRGRPHRE 317
Query: 695 SVSSSSGLG-EEEPPALPSKLLSSGSCKA 722
+ G G EE+P A PS+L + SC +
Sbjct: 318 AAQDPRGSGSEEQPSAAPSRLAAPPSCSS 346
>gi|31543148 hypothetical protein LOC79173 [Homo sapiens]
Length = 637
Score = 38.9 bits (89), Expect = 0.017
Identities = 36/127 (28%), Positives = 50/127 (39%), Gaps = 19/127 (14%)
Query: 625 GGLDQDGEARPALDGSA-------ALQPLLHTVKAGS-----------PSDMPRDSGIYD 666
GG ++G+ P SA L P ++ GS PS M R+
Sbjct: 267 GGPQEEGDGVPCTPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGEGTH 326
Query: 667 SSVPSSELSLPLMEGLSTDQTETSSLTESVSSSSGLGEEEPPALPSKLLSSGSCKADL-G 725
SS+ S L + ++ LSTD TE V+ G PA P + + G + L G
Sbjct: 327 SSLGCSSLGMVVIADLSTDPTELEERALEVAGPDGQASAISPASPRRKAADGGHRRALPG 386
Query: 726 CRSYTDE 732
C S T E
Sbjct: 387 CTSLTGE 393
>gi|193083172 nuclear assembly factor 1 homolog isoform b [Homo
sapiens]
Length = 389
Score = 36.2 bits (82), Expect = 0.11
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 607 AAVLGATGPADSQHESQHGGLDQDGEARPALDGSAALQPLLHTVKAGSPSDMPR---DSG 663
A V G P S S G Q E +PA G LQP+L+ V AG+P+ P+ +S
Sbjct: 35 APVPGTQPPLQSFEGSPDAG--QTVEVKPA--GEQPLQPVLNAVAAGTPAPQPQPPAESP 90
Query: 664 IYDSSVPSSELSLPLM--EGLSTDQTETSSLTESVSSSSGLGEEEPPALPSKLLSSGSC 720
V S + P + L T +++ S +E+ S SS + S SS SC
Sbjct: 91 ACGDCVTSPGAAEPARAPDSLETSDSDSDSDSETDSDSSSSSSSSSSSSSS---SSSSC 146
>gi|193083157 nuclear assembly factor 1 homolog isoform a [Homo
sapiens]
Length = 494
Score = 36.2 bits (82), Expect = 0.11
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 607 AAVLGATGPADSQHESQHGGLDQDGEARPALDGSAALQPLLHTVKAGSPSDMPR---DSG 663
A V G P S S G Q E +PA G LQP+L+ V AG+P+ P+ +S
Sbjct: 35 APVPGTQPPLQSFEGSPDAG--QTVEVKPA--GEQPLQPVLNAVAAGTPAPQPQPPAESP 90
Query: 664 IYDSSVPSSELSLPLM--EGLSTDQTETSSLTESVSSSSGLGEEEPPALPSKLLSSGSC 720
V S + P + L T +++ S +E+ S SS + S SS SC
Sbjct: 91 ACGDCVTSPGAAEPARAPDSLETSDSDSDSDSETDSDSSSSSSSSSSSSSS---SSSSC 146
>gi|10863903 thyroid hormone receptor interactor 12 [Homo sapiens]
Length = 1992
Score = 35.0 bits (79), Expect = 0.25
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 690 SSLTESVSSSSGLGEEEPPALPSKLLSSGSCKADLGCRSYTDELHAVA 737
SS +S S S G EE A P+KL S + A GC + TD A +
Sbjct: 154 SSCVKSGSGSESTGAEERSAKPTKLASKSATSAKAGCSTITDSSSAAS 201
>gi|21237745 mitogen-activated protein kinase 9 isoform JNK2 beta2
[Homo sapiens]
Length = 424
Score = 33.9 bits (76), Expect = 0.56
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 651 KAGSPSDMPRDSGIYDSSVPSSELSLPLMEGLSTDQTETSSLTESVSSSSG 701
K G D P D+ + ++ PS S+ + +ST+QT S S+ +S+G
Sbjct: 368 KNGVVKDQPSDAAVSSNATPSQSSSINDISSMSTEQTLASDTDSSLDASTG 418
>gi|21237736 mitogen-activated protein kinase 9 isoform JNK2 alpha2
[Homo sapiens]
Length = 424
Score = 33.9 bits (76), Expect = 0.56
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 651 KAGSPSDMPRDSGIYDSSVPSSELSLPLMEGLSTDQTETSSLTESVSSSSG 701
K G D P D+ + ++ PS S+ + +ST+QT S S+ +S+G
Sbjct: 368 KNGVVKDQPSDAAVSSNATPSQSSSINDISSMSTEQTLASDTDSSLDASTG 418
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 33.1 bits (74), Expect = 0.95
Identities = 38/146 (26%), Positives = 53/146 (36%), Gaps = 3/146 (2%)
Query: 594 KPGPESDFCLKVEAAVLGATGPADSQHESQHGGLDQDGEARPALDGSAALQPLLHTVKAG 653
K E D + E++ ++G + S S G + +GE +G A
Sbjct: 2546 KAQAEQDGAEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAA 2605
Query: 654 SPSDMPRDSGIYDSSVPSSELSLPLMEGLSTDQTETSSLTESVSSSSGLGEEEPPALPSK 713
S S SS SS S S+ + +SS + S SSSS + S
Sbjct: 2606 SSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2665
Query: 714 LLSSGS-CKADLGCRSYTDELHAVAP 738
SS S D C S D+ A AP
Sbjct: 2666 SSSSSSTTDEDSSCSS--DDEAAPAP 2689
>gi|223646113 Sp9 transcription factor homolog [Homo sapiens]
Length = 484
Score = 32.3 bits (72), Expect = 1.6
Identities = 47/154 (30%), Positives = 65/154 (42%), Gaps = 18/154 (11%)
Query: 596 GPESDFCLKVEAAV-------LGATGPADSQHESQHGGLDQDGEARPALDGSAALQPLLH 648
G +S F KV +G P +S ++S G A +G+A+ +H
Sbjct: 128 GGQSAFISKVHTTAADGLYPRVGMAHPYESWYKS---GFHSTLAAGEVTNGAASSWWDVH 184
Query: 649 TVKAGSPSDMPRDSGIYDSSVPSSELSLPLMEGLSTDQTETSSLTESVSSSSGLGEEEPP 708
+ GS ++ +G SS+ S L L T + SSLT S SS+GLG
Sbjct: 185 S-SPGSWLEVQNPAGGLQSSLHSGAPQASLHSQLGTYNPDFSSLTHSAFSSTGLGSS--A 241
Query: 709 ALPSKLLS-SGSCKADLGCR----SYTDELHAVA 737
A S LLS S A G + SY+D AVA
Sbjct: 242 AAASHLLSTSQHLLAQDGFKPVLPSYSDSSAAVA 275
>gi|11415052 retinoid X receptor, beta [Homo sapiens]
Length = 533
Score = 32.3 bits (72), Expect = 1.6
Identities = 31/115 (26%), Positives = 43/115 (37%), Gaps = 8/115 (6%)
Query: 611 GATGPADSQHESQHGGLDQDGEARPALDGSAALQPLLHTVKAGSPSDMPRDSGI------ 664
G GP + E G + RP LD +AA + + +P P ++G
Sbjct: 17 GQCGPVGVRKEMHCGVASRWRRRRPWLDPAAAAAAAVAGGEQQTPEPEPGEAGRDGMGDS 76
Query: 665 -YDSSVPSSELSLPLMEGLSTDQTETSSLTESVSSS-SGLGEEEPPALPSKLLSS 717
DS P S PL +G+ L S + S G G PP +P L S
Sbjct: 77 GRDSRSPDSSSPNPLPQGVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPPLGS 131
>gi|21493022 A kinase (PRKA) anchor protein 12 isoform 1 [Homo
sapiens]
Length = 1782
Score = 32.3 bits (72), Expect = 1.6
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 632 EARPALDGSAALQPLLHTVKAGSPSDMPRDSGIYDSSVPSSELSLPLMEGLSTDQTETSS 691
E + A + S L + A + +D R + I + PS +S + E L + E +
Sbjct: 873 EQKAATEVSKELSESQVHMMAAAVADGTRAATIIEERSPSW-ISASVTEPLEQVEAEAAL 931
Query: 692 LTESVSSSSGLGEEEPPALPSKLLSSGSCKAD 723
LTE V + EEEPP + L + + D
Sbjct: 932 LTEEVLEREVIAEEEPPTVTEPLPENREARGD 963
>gi|21493024 A kinase (PRKA) anchor protein 12 isoform 2 [Homo
sapiens]
Length = 1684
Score = 32.3 bits (72), Expect = 1.6
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 632 EARPALDGSAALQPLLHTVKAGSPSDMPRDSGIYDSSVPSSELSLPLMEGLSTDQTETSS 691
E + A + S L + A + +D R + I + PS +S + E L + E +
Sbjct: 775 EQKAATEVSKELSESQVHMMAAAVADGTRAATIIEERSPSW-ISASVTEPLEQVEAEAAL 833
Query: 692 LTESVSSSSGLGEEEPPALPSKLLSSGSCKAD 723
LTE V + EEEPP + L + + D
Sbjct: 834 LTEEVLEREVIAEEEPPTVTEPLPENREARGD 865
>gi|41152107 ubiquitin-like 7 [Homo sapiens]
Length = 380
Score = 32.0 bits (71), Expect = 2.1
Identities = 33/96 (34%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 627 LDQDGEARPALDGSAALQPLLHTVKAGSPSDMPRDSGIYDSSVPSSELSLP---LMEGLS 683
LD A PAL + L +LH+V +P MP S SS +P L EGLS
Sbjct: 175 LDTLVPAHPALVNAIVL--VLHSVAGSAP--MPGTDSSSRSMPSSSYRDMPGGFLFEGLS 230
Query: 684 TDQTETSSLTESVSSSSGLGEEEPPALPSKLLSSGS 719
D+ + T S SSS P + P+ L SG+
Sbjct: 231 DDEDDFHPNTRSTPSSS-----TPSSRPASLGYSGA 261
>gi|14249682 ubiquitin-like 7 [Homo sapiens]
Length = 380
Score = 32.0 bits (71), Expect = 2.1
Identities = 33/96 (34%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 627 LDQDGEARPALDGSAALQPLLHTVKAGSPSDMPRDSGIYDSSVPSSELSLP---LMEGLS 683
LD A PAL + L +LH+V +P MP S SS +P L EGLS
Sbjct: 175 LDTLVPAHPALVNAIVL--VLHSVAGSAP--MPGTDSSSRSMPSSSYRDMPGGFLFEGLS 230
Query: 684 TDQTETSSLTESVSSSSGLGEEEPPALPSKLLSSGS 719
D+ + T S SSS P + P+ L SG+
Sbjct: 231 DDEDDFHPNTRSTPSSS-----TPSSRPASLGYSGA 261
>gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens]
Length = 2608
Score = 32.0 bits (71), Expect = 2.1
Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 588 LNDVMCKPGPESDFCLKVEAAVLGATGPADSQHESQHGGLDQDGEARPALDGSAALQPLL 647
L D +P PE D ++E LG DS+ + GG + AL G AL +
Sbjct: 1213 LEDEGEQPAPEED---ELEEDELGQQSMEDSEEDC--GGAPDNSHPPRALPGLDAL--VA 1265
Query: 648 HTVKAGS-PSDMPRDSGIYDSSVPSSELSLPLMEGL 682
T+ G PSD P D +S P S + LP G+
Sbjct: 1266 ATINLGDLPSDSPPDPQPPAASGPPSTVPLPHSSGI 1301
>gi|13375981 zinc finger protein 385D [Homo sapiens]
Length = 395
Score = 32.0 bits (71), Expect = 2.1
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 26 AAGGSGRARGADTCGWRGVGPASR-NSGLYNITFKYDNCTTYLN 68
A GSG + G +G GP ++ N+GL N TF + C ++N
Sbjct: 234 ARNGSGTIKAFPRAGVKGKGPVNKGNTGLQNKTFHCEICDVHVN 277
>gi|46592991 GRIP1 associated protein 1 isoform 1 [Homo sapiens]
Length = 841
Score = 31.6 bits (70), Expect = 2.8
Identities = 33/94 (35%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 630 DGEARPALDGSAALQPL---LHTVKAGSPSDMPRDSGIYDSSVPSS---ELSLPLMEGLS 683
DG+ GSAAL+ L LH + + R I +S S EL L M S
Sbjct: 598 DGQRILEKKGSAALKDLKRQLHLERKRADKLQERLQDILTNSKSRSGLEELVLSEMNSPS 657
Query: 684 TDQTETSSLTESVSSSSGLGEEEPPALPSKLLSS 717
QT SS S S L E+E A+P++ LSS
Sbjct: 658 RTQTGDSSSISSFSYREILREKESSAVPARSLSS 691
>gi|87578392 microtubule-associated protein 2 isoform 2 [Homo
sapiens]
Length = 471
Score = 31.2 bits (69), Expect = 3.6
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 628 DQDGEARPALDGSAALQPLLHTVKAGSPSDMPRDSGIYDSSVPSSELSLPLMEGLSTDQT 687
+Q A G +AL P + SD S SS+P LP G+S D+
Sbjct: 144 EQTVTVEEAAGGESALAPSVFKQAKDKVSDGVTKSPEKRSSLPRPSSILPPRRGVSGDRD 203
Query: 688 ETS-SLTESVSSSS 700
E S SL S+SSS+
Sbjct: 204 ENSFSLNSSISSSA 217
>gi|87578255 microtubule-associated protein 2 isoform 4 [Homo
sapiens]
Length = 502
Score = 31.2 bits (69), Expect = 3.6
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 628 DQDGEARPALDGSAALQPLLHTVKAGSPSDMPRDSGIYDSSVPSSELSLPLMEGLSTDQT 687
+Q A G +AL P + SD S SS+P LP G+S D+
Sbjct: 144 EQTVTVEEAAGGESALAPSVFKQAKDKVSDGVTKSPEKRSSLPRPSSILPPRRGVSGDRD 203
Query: 688 ETS-SLTESVSSSS 700
E S SL S+SSS+
Sbjct: 204 ENSFSLNSSISSSA 217
>gi|170932526 nuclear receptor coactivator 7 isoform 2 [Homo
sapiens]
Length = 931
Score = 31.2 bits (69), Expect = 3.6
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 4/123 (3%)
Query: 584 SGLVLNDVMCKPGPESDFCLKVEAAVLGATGPADSQHESQHGGLDQDGEARPALDGSAAL 643
S + + D + PG D + + + + Q+G ++RP + +
Sbjct: 285 SHMKIKDALPSPGEWEDLASEKDINPFSKFKSINKEKRQQNGEKIMTSDSRPIVPLEKST 344
Query: 644 QPLLHTVKAGSPSDMPRDSGIYDSSVPSSELSLPLMEGLSTDQTETSSLTESVSSSSGLG 703
HT S S + DSS +S S P + LS + ++TSS ES + + LG
Sbjct: 345 G---HTPTKPSGSSVSEKLKKLDSSRETSHGS-PTVTKLSKEPSDTSSAFESTAKENFLG 400
Query: 704 EEE 706
E++
Sbjct: 401 EDD 403
>gi|87578396 microtubule-associated protein 2 isoform 1 [Homo sapiens]
Length = 1827
Score = 30.8 bits (68), Expect = 4.7
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 636 ALDGSAALQPLLHTVKAGSPSDMPRDSGIYDSSVPSSELSLPLMEGLSTDQTETS-SLTE 694
A G +AL P + SD S SS+P LP G+S D+ E S SL
Sbjct: 1508 AAGGESALAPSVFKQAKDKVSDGVTKSPEKRSSLPRPSSILPPRRGVSGDRDENSFSLNS 1567
Query: 695 SVSSSS 700
S+SSS+
Sbjct: 1568 SISSSA 1573
>gi|28559039 mediator complex subunit 1 [Homo sapiens]
Length = 1581
Score = 30.8 bits (68), Expect = 4.7
Identities = 33/152 (21%), Positives = 55/152 (36%), Gaps = 28/152 (18%)
Query: 611 GATGPADSQHESQHGGL--------------DQDGEARPALDGSAALQPLL--------H 648
G++G + S++ SQ GG + +P S+ + P L H
Sbjct: 1136 GSSGSSQSKNSSQSGGKPGSSPITKHGLSSGSSSTKMKPQGKPSSLMNPSLSKPNISPSH 1195
Query: 649 TVKAGSPSDMPRDSGIYDSSVPSSELSLPLMEGLSTDQTETSSLTESVSSSSGLG----- 703
+ G + + PSS+ P+ G +S + + SSSGLG
Sbjct: 1196 SRPPGGSDKLASPMKPVPGTPPSSKAKSPISSGSGGSHMSGTSSSSGMKSSSGLGSSGSL 1255
Query: 704 -EEEPPALPSKLLSSGSCKADLGCRSYTDELH 734
++ PP+ S SS S + S + H
Sbjct: 1256 SQKTPPSSNSCTASSSSFSSSGSSMSSSQNQH 1287
>gi|5174573 myeloid/lymphoid or mixed-lineage leukemia trithorax
homolog 2 [Homo sapiens]
Length = 1210
Score = 30.8 bits (68), Expect = 4.7
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 16/85 (18%)
Query: 628 DQDGEARPALDGSAALQPLLHTVKAGSPSDMPRDSGIYDSSVPSSELSLPLMEGLSTDQT 687
D D E P S++ P +P +P SS SE ST +
Sbjct: 434 DSDSEQTPEKPPSSSAPP-------SAPQSLPEPVASAHSSSAESE---------STSDS 477
Query: 688 ETSSLTESVSSSSGLGEEEPPALPS 712
++SS +ES SSSS E EP P+
Sbjct: 478 DSSSDSESESSSSDSEENEPLETPA 502
>gi|12669915 E2F transcription factor 4 [Homo sapiens]
Length = 413
Score = 30.8 bits (68), Expect = 4.7
Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 6/114 (5%)
Query: 615 PADSQHESQHGGLDQDGEARP-ALDGSAALQ----PLLHTVKAGSPSDMPRDSGIYDSSV 669
P + +SQ + P A+ GSA +Q P +G P +DSG SS+
Sbjct: 229 PKPALAQSQEASRPNSPQLTPTAVPGSAEVQGMAGPAAEITVSGGPGTDSKDSGEL-SSL 287
Query: 670 PSSELSLPLMEGLSTDQTETSSLTESVSSSSGLGEEEPPALPSKLLSSGSCKAD 723
P +L S+ ++SS + S SSSS + P+ S KAD
Sbjct: 288 PLGPTTLDTRPLQSSALLDSSSSSSSSSSSSSNSNSSSSSGPNPSTSFEPIKAD 341
>gi|20070163 voltage-dependent calcium channel alpha 1G subunit
isoform 1 [Homo sapiens]
Length = 2377
Score = 30.4 bits (67), Expect = 6.2
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 630 DGEARPALDGSAALQPLLHTVKAGSPS-DMPRDSGIYDSSV----PSSELSLPLMEGLST 684
+G P AL P H A S + P D ++D+ S E L LM+ L+
Sbjct: 1896 EGPDSPDSPKPGALHPAAHARSASHFSLEHPTDRQLFDTISLLIQGSLEWELKLMDELAG 1955
Query: 685 DQTETSSLTESVSSSSG-----LGEEEPPALPSKLLSSGSCKADLGCRSYTDELHAV 736
+ S+ + S L E E +L S+++S SC L S D++H +
Sbjct: 1956 PGGQPSAFPSAPSLGGSDPQIPLAEMEALSLTSEIVSEPSCSLALTDDSLPDDMHTL 2012
>gi|4507255 signal transducer and activator of transcription 4 [Homo
sapiens]
Length = 748
Score = 30.4 bits (67), Expect = 6.2
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 687 TETSSLTESVSSSSGLGEEEPPALPSKLLSSGSCKADLGCRSYTDELHAV 736
T +++ SS+ L E P ++ SS K + GC T+ELH++
Sbjct: 380 TNVKAMSIEESSNGSLSVEFRHLQPKEMKSSAGGKGNEGCHMVTEELHSI 429
>gi|38505292 voltage-dependent calcium channel alpha 1G subunit
isoform 3 [Homo sapiens]
Length = 2343
Score = 30.4 bits (67), Expect = 6.2
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 630 DGEARPALDGSAALQPLLHTVKAGSPS-DMPRDSGIYDSSV----PSSELSLPLMEGLST 684
+G P AL P H A S + P D ++D+ S E L LM+ L+
Sbjct: 1862 EGPDSPDSPKPGALHPAAHARSASHFSLEHPTDRQLFDTISLLIQGSLEWELKLMDELAG 1921
Query: 685 DQTETSSLTESVSSSSG-----LGEEEPPALPSKLLSSGSCKADLGCRSYTDELHAV 736
+ S+ + S L E E +L S+++S SC L S D++H +
Sbjct: 1922 PGGQPSAFPSAPSLGGSDPQIPLAEMEALSLTSEIVSEPSCSLALTDDSLPDDMHTL 1978
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,328,295
Number of Sequences: 37866
Number of extensions: 1514968
Number of successful extensions: 4201
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 4172
Number of HSP's gapped (non-prelim): 47
length of query: 739
length of database: 18,247,518
effective HSP length: 110
effective length of query: 629
effective length of database: 14,082,258
effective search space: 8857740282
effective search space used: 8857740282
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.