Guide to the Human Genome
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Name: ZNF385D Sequence: fasta or formatted (395aa) NCBI GI: 13375981
Description:

zinc finger protein 385D

Referenced in:

Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.9         47           8
 C cysteine            2.0          8           1
 D aspartate           2.3          9           1
 E glutamate           3.3         13           3
 F phenylalanine       3.5         14           1
 G glycine             4.6         18           2
 H histidine           3.0         12           1
 I isoleucine          4.3         17           2
 K lysine              9.4         37           2
 L leucine             7.6         30           2
 M methionine          1.5          6           1
 N asparagine          5.1         20           1
 P proline             9.6         38           2
 Q glutamine           3.3         13           1
 R arginine            4.1         16           2
 S serine              8.4         33           2
 T threonine           9.9         39           4
 V valine              4.8         19           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.5          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 385D 
ZNF385B               0.567   zinc finger protein 385B isoform 2 
ZNF385B               0.567   zinc finger protein 385B isoform 1 
ZNF385B               0.542   zinc finger protein 385B isoform 3 
ZNF385A               0.405   zinc finger protein 385A isoform a 
ZNF385A               0.396   zinc finger protein 385A isoform c 
ZNF385C               0.331   PREDICTED: zinc finger protein 385C 
ZNF385C               0.331   PREDICTED: zinc finger protein 385C 
ZNF385C               0.331   PREDICTED: zinc finger protein 385C 
ZNF385A               0.236   zinc finger protein 385A isoform b 
ZNF346                0.039   zinc finger protein 346 
ZMAT4                 0.039   zinc finger, matrin type 4 isoform a 
ZMAT4                 0.034   zinc finger, matrin type 4 isoform b 
ZMAT3                 0.031   p53 target zinc finger protein isoform 1 
ZMAT3                 0.030   p53 target zinc finger protein isoform 2 
ZFR                   0.029   zinc finger RNA binding protein 
LOC100131251          0.029   PREDICTED: hypothetical protein 
LOC100131251          0.029   PREDICTED: hypothetical protein 
ZFHX4                 0.025   zinc finger homeodomain 4 
MUC5B                 0.021   mucin 5, subtype B, tracheobronchial 
LOC730474             0.020   PREDICTED: hypothetical protein, partial 
LOC730474             0.020   PREDICTED: hypothetical protein 
ZMAT1                 0.018   zinc finger, matrin type 1 isoform 1 
LOC100294470          0.018   PREDICTED: hypothetical protein, partial 
MUC21                 0.018   mucin 21 
ZFHX2                 0.018   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.018   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.018   PREDICTED: zinc finger homeobox 2 
LOC100132635          0.017   PREDICTED: similar to mucin 5, partial 
ZFR2                  0.017   zinc finger RNA binding protein 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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