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Search of human proteins with 16445027
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|16445027 BAFF receptor [Homo sapiens]
(184 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|16445027 BAFF receptor [Homo sapiens] 376 e-105
gi|110832843 TBP-associated factor 4 [Homo sapiens] 37 0.007
gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens] 36 0.016
gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens] 36 0.016
gi|20143482 melanoma antigen family E, 1 [Homo sapiens] 35 0.036
gi|210032580 SET domain containing 1B [Homo sapiens] 35 0.036
gi|110227613 centaurin, gamma 3 isoform a [Homo sapiens] 35 0.048
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 35 0.048
gi|50301236 forkhead box J1 [Homo sapiens] 35 0.048
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 35 0.048
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo... 35 0.048
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 35 0.048
gi|24308547 hypothetical protein LOC196500 [Homo sapiens] 35 0.048
gi|7706186 tumor necrosis factor receptor superfamily, member 12... 34 0.062
gi|51988887 SH3 domain containing ring finger 1 [Homo sapiens] 34 0.062
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 34 0.081
gi|168229226 hypothetical protein LOC401399 [Homo sapiens] 34 0.081
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 34 0.081
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 33 0.11
gi|210031154 zinc finger protein 541 [Homo sapiens] 33 0.11
gi|169203406 PREDICTED: hypothetical protein [Homo sapiens] 33 0.14
gi|169202578 PREDICTED: hypothetical protein [Homo sapiens] 33 0.14
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens] 33 0.14
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 33 0.14
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 33 0.14
gi|69885149 Fc receptor-like and mucin-like 1 [Homo sapiens] 33 0.14
gi|42544125 splicing factor 1 isoform 2 [Homo sapiens] 33 0.18
gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens] 33 0.18
gi|26051278 nuclear pore membrane protein 121 [Homo sapiens] 33 0.18
gi|10835203 advanced glycosylation end product-specific receptor... 32 0.24
>gi|16445027 BAFF receptor [Homo sapiens]
Length = 184
Score = 376 bits (965), Expect = e-105
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MRRGPRSLRGRDAPAPTPCVPAECFDLLVRHCVACGLLRTPRPKPAGASSPAPRTALQPQ 60
MRRGPRSLRGRDAPAPTPCVPAECFDLLVRHCVACGLLRTPRPKPAGASSPAPRTALQPQ
Sbjct: 1 MRRGPRSLRGRDAPAPTPCVPAECFDLLVRHCVACGLLRTPRPKPAGASSPAPRTALQPQ 60
Query: 61 ESVGAGAGEAALPLPGLLFGAPALLGLALVLALVLVGLVSWRRRQRRLRGASSAEAPDGD 120
ESVGAGAGEAALPLPGLLFGAPALLGLALVLALVLVGLVSWRRRQRRLRGASSAEAPDGD
Sbjct: 61 ESVGAGAGEAALPLPGLLFGAPALLGLALVLALVLVGLVSWRRRQRRLRGASSAEAPDGD 120
Query: 121 KDAPEPLDKVIILSPGISDATAPAWPPPGEDPGTTPPGHSVPVPATELGSTELVTTKTAG 180
KDAPEPLDKVIILSPGISDATAPAWPPPGEDPGTTPPGHSVPVPATELGSTELVTTKTAG
Sbjct: 121 KDAPEPLDKVIILSPGISDATAPAWPPPGEDPGTTPPGHSVPVPATELGSTELVTTKTAG 180
Query: 181 PEQQ 184
PEQQ
Sbjct: 181 PEQQ 184
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 37.4 bits (85), Expect = 0.007
Identities = 54/193 (27%), Positives = 66/193 (34%), Gaps = 35/193 (18%)
Query: 2 RRGPRSLRGRDAPAPTPCVPA------------ECFDLLVRHCVACGLLRTPRPKPAGAS 49
R GP S R PA P PA C + VA G P P PAG +
Sbjct: 104 RPGPPSPRRPLVPAG-PAPPAAKLRPPPEGSAGSCAPVPAAAAVAAG----PEPAPAGPA 158
Query: 50 SPAPRTALQPQESVGAGAGEAALPLPG-----------LLFGAPALLG----LALVLALV 94
PA AL + G G G P PG L G+ ALL A ++LV
Sbjct: 159 KPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLV 218
Query: 95 LVGLVSWRRRQRRLRGASSAEAPD--GDKDAPEPLDKVIILSPG-ISDATAPAWPPPGED 151
G + + + + P G P P +P + A AP PPP
Sbjct: 219 NNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPA 278
Query: 152 PGTTPPGHSVPVP 164
PPGH P
Sbjct: 279 TLARPPGHPAGPP 291
Score = 29.3 bits (64), Expect = 2.0
Identities = 41/170 (24%), Positives = 56/170 (32%), Gaps = 24/170 (14%)
Query: 13 APAPTPCVPAECFDLLVRHCVACGLLRTPRPKPAGASSPAPRTALQPQESVGAGAGEAAL 72
AP P P PA L P PAG + AP A+ P + G A
Sbjct: 269 APPPPPPAPAT--------------LARPPGHPAGPPTAAP--AVPPPAAAQNGGSAGAA 312
Query: 73 PLPGLLFGAPALL----GLALVLALVLVGLVSWRRRQRRLRGASSAEAPDGDKDAPEPLD 128
P P G PA + G A G+ + +R+ A+ A P
Sbjct: 313 PAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKA--ESPKRVVQAAPPAAQTLAASGPASTA 370
Query: 129 KVIILSPGISDA--TAPAWPPPGEDPGTTPPGHSVPVPATELGSTELVTT 176
+++ P + A + A PPP T P + L T TT
Sbjct: 371 ASMVIGPTMQGALPSPAAVPPPAPGTPTGLPKGAAGAVTQSLSRTPTATT 420
>gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens]
Length = 516
Score = 36.2 bits (82), Expect = 0.016
Identities = 42/145 (28%), Positives = 50/145 (34%), Gaps = 27/145 (18%)
Query: 10 GRDAPAPTPCVPAECFDLLVR----HCVACGLLRTPRPKPAGASSPAPRTALQPQESVGA 65
G AP P P + DLL++ C+A LL + + P P A
Sbjct: 178 GLQAPGPLPAPAGDKGDLLLQAVQQSCLADHLLTA-----SWGADPVPTKA--------P 224
Query: 66 GAGEAALPLPGLLFGAPALLGLALVLALVLVGLVSWRRRQRRLRGASSAEAPDGDKDAPE 125
G G+ LPL G G P L L W G A G+ APE
Sbjct: 225 GEGQEGLPLTGACAGGP---------GLPAGELYGWAVETTPSPGPQPAALTTGEAAAPE 275
Query: 126 -PLDKVIILSPGISDATAPAWPPPG 149
P LSP S TA P PG
Sbjct: 276 SPHQAEPYLSPSPSACTAVQEPSPG 300
>gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens]
Length = 503
Score = 36.2 bits (82), Expect = 0.016
Identities = 42/145 (28%), Positives = 50/145 (34%), Gaps = 27/145 (18%)
Query: 10 GRDAPAPTPCVPAECFDLLVR----HCVACGLLRTPRPKPAGASSPAPRTALQPQESVGA 65
G AP P P + DLL++ C+A LL + + P P A
Sbjct: 165 GLQAPGPLPAPAGDKGDLLLQAVQQSCLADHLLTA-----SWGADPVPTKA--------P 211
Query: 66 GAGEAALPLPGLLFGAPALLGLALVLALVLVGLVSWRRRQRRLRGASSAEAPDGDKDAPE 125
G G+ LPL G G P L L W G A G+ APE
Sbjct: 212 GEGQEGLPLTGACAGGP---------GLPAGELYGWAVETTPSPGPQPAALTTGEAAAPE 262
Query: 126 -PLDKVIILSPGISDATAPAWPPPG 149
P LSP S TA P PG
Sbjct: 263 SPHQAEPYLSPSPSACTAVQEPSPG 287
>gi|20143482 melanoma antigen family E, 1 [Homo sapiens]
Length = 957
Score = 35.0 bits (79), Expect = 0.036
Identities = 39/144 (27%), Positives = 53/144 (36%), Gaps = 26/144 (18%)
Query: 60 QESVGAGAGEAALPLP--GLLFGAPALLGLALVLALVLVGLVSWRRRQRRLRGASSAEAP 117
Q ++ G G + LP P GL P + L ++ L + R +S+E P
Sbjct: 93 QPTISEGPGTSVLPTPSEGLSTSGPPTISKGLCTSVTLAA----SEGRNTSRPPTSSEEP 148
Query: 118 DGDKDAPEPLDKVIILSPGISDATAPAWPP-------------PGEDPGT----TP---P 157
L P + T+ + PP P E P T TP P
Sbjct: 149 STSVPPTASEVPSTSLPPTPGEGTSTSVPPTAYEGPSTSVVPTPDEGPSTSVLPTPGEGP 208
Query: 158 GHSVPVPATELGSTELVTTKTAGP 181
G SVP+ ATE ST + T GP
Sbjct: 209 GTSVPLAATEGLSTSVQATPDEGP 232
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 35.0 bits (79), Expect = 0.036
Identities = 40/140 (28%), Positives = 49/140 (35%), Gaps = 18/140 (12%)
Query: 42 RPKPAGAS--SPAPRTALQPQESVGAGAGEAALPLPGLLFGAPALLGLALVLALVLVGLV 99
RP G SP P E + G G P PG A LL +AL LVG
Sbjct: 563 RPSSTGLEDISPTPLPDSDEDEELDLGLGPRPPPEPGPPDPA-GLLSQTAEVALDLVGDR 621
Query: 100 SWRRRQRRLRGASSAE-----------APDGDKDAPEPL----DKVIILSPGISDATAPA 144
+ + SS E AP D P+P+ + +P + T P
Sbjct: 622 TPTSEKMDEGQQSSGEDMEISDDEMPSAPITSADCPKPMVVTPGAAAVAAPSVLAPTLPL 681
Query: 145 WPPPGEDPGTTPPGHSVPVP 164
PPPG P PP P P
Sbjct: 682 PPPPGFPPLPPPPPPPPPQP 701
>gi|110227613 centaurin, gamma 3 isoform a [Homo sapiens]
Length = 911
Score = 34.7 bits (78), Expect = 0.048
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 8 LRGRDAPAPTPCVPA------ECFDLLVRHCV---ACGLLRTPRPKPAGASSPAPRTALQ 58
+R RDA TP A EC D+L++H CGL TP +PA ++P+
Sbjct: 848 VRSRDARGLTPLAYARRAGSQECADILIQHGCPGEGCGLAPTPNREPANGTNPSAELHRS 907
Query: 59 P 59
P
Sbjct: 908 P 908
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 34.7 bits (78), Expect = 0.048
Identities = 41/144 (28%), Positives = 51/144 (35%), Gaps = 15/144 (10%)
Query: 16 PTPCVPAECFDLLVRHCVACGLLRTPRPKPAGASSPAPRTALQPQESVGAGAGEAALPLP 75
P C P LL A G R P P G P + Q+ + AG LP P
Sbjct: 4 PRACAPLLLLLLLGELLAAAGAQRVGLPGPPGPPGPPGKPG---QDGIDGEAGPPGLPGP 60
Query: 76 GLLFGAPALLGLALVLALVLVGLVSWRRRQRRLRGASSAEAPDGDKDAPEPLDKVIILSP 135
GAP G L GL + G + + P G K AP ++ + P
Sbjct: 61 PGPKGAPGKPGKPGEAG--LPGLPG-------VDGLTGRDGPPGPKGAPG--ERGSLGPP 109
Query: 136 GISDATAPAWP-PPGEDPGTTPPG 158
G P PPGE + PPG
Sbjct: 110 GPPGLGGKGLPGPPGEAGVSGPPG 133
>gi|50301236 forkhead box J1 [Homo sapiens]
Length = 421
Score = 34.7 bits (78), Expect = 0.048
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 21/99 (21%)
Query: 107 RLRGASSAE--APDGDKDAPEPLDKVI-----ILSPGISDATAPAWPPPGED-------P 152
RL GA AE P+G + P+ LD + + I +A APA PP G D P
Sbjct: 7 RLSGAGPAEEAGPEGGLEEPDALDDSLTSLQWLQEFSILNAKAPALPPGGTDPHGYHQVP 66
Query: 153 GTTPPGHSVPVPATELGS-------TELVTTKTAGPEQQ 184
G+ PG + LG T T+++A P Q
Sbjct: 67 GSAAPGSPLAADPACLGQPHTPGKPTSSCTSRSAPPGLQ 105
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 34.7 bits (78), Expect = 0.048
Identities = 42/143 (29%), Positives = 48/143 (33%), Gaps = 7/143 (4%)
Query: 31 HCVACGLLRTPRPKPAGASSPAPRTALQPQESVGAGAGEAALPLPGLLFGAPALLGLALV 90
H V G RT P P P TAL A A A PL G
Sbjct: 712 HTVEHGSPRTRDPTPRPPGLPEEATALAAPSPPRARARAAPRPLGA--HGRRRSPAKRAE 769
Query: 91 LALVLVGLVSWRRRQRRLRGASSAEAPDGDKDAPEPLDKVIILSPGISDATAPAWPPPGE 150
A +L V R + R L A A G ++ P P K P S A A PP E
Sbjct: 770 AASMLAADV--RGKTRSLGRAEVALGAQGPREKPAPPQKAKRSVPPASPARA---PPATE 824
Query: 151 DPGTTPPGHSVPVPATELGSTEL 173
PG +P P T T +
Sbjct: 825 TPGPEKAATDLPAPETPRKKTPI 847
>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
sapiens]
Length = 865
Score = 34.7 bits (78), Expect = 0.048
Identities = 42/143 (29%), Positives = 48/143 (33%), Gaps = 7/143 (4%)
Query: 31 HCVACGLLRTPRPKPAGASSPAPRTALQPQESVGAGAGEAALPLPGLLFGAPALLGLALV 90
H V G RT P P P TAL A A A PL G
Sbjct: 707 HTVEHGSPRTRDPTPRPPGLPEEATALAAPSPPRARARAAPRPLGA--HGRRRSPAKRAE 764
Query: 91 LALVLVGLVSWRRRQRRLRGASSAEAPDGDKDAPEPLDKVIILSPGISDATAPAWPPPGE 150
A +L V R + R L A A G ++ P P K P S A A PP E
Sbjct: 765 AASMLAADV--RGKTRSLGRAEVALGAQGPREKPAPPQKAKRSVPPASPARA---PPATE 819
Query: 151 DPGTTPPGHSVPVPATELGSTEL 173
PG +P P T T +
Sbjct: 820 TPGPEKAATDLPAPETPRKKTPI 842
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 34.7 bits (78), Expect = 0.048
Identities = 45/154 (29%), Positives = 60/154 (38%), Gaps = 20/154 (12%)
Query: 41 PRPKPAGASSP--APRTALQPQESVGAGAGEAALPLPGLLFGAPALLGLAL------VLA 92
P P G+ P +P L P + +G LP GL G PA G A V +
Sbjct: 560 PGLSPGGSRRPPRSPERTLSPSSGYSSQSGTPTLPPKGLA-GPPASPGKAQPPKPERVTS 618
Query: 93 LVLVGLVSWRRRQRRLRGASSAEAPDGDKDAPEPL----DKVIILSPGISDATAPAWPPP 148
L G S L +SS AP D+ P+ L D+ +I P AP PPP
Sbjct: 619 LRSPG-ASVSSSLTSLCSSSSDPAPS-DRSGPQILTPLGDRFVI--PPHPKVPAPFSPPP 674
Query: 149 GEDPGTTPPGHSVPVPATELGSTELVTTKTAGPE 182
+ P ++ PA G V+T A P+
Sbjct: 675 SKPRSPNPAAPALAAPAVVPGP---VSTTDASPQ 705
>gi|24308547 hypothetical protein LOC196500 [Homo sapiens]
Length = 282
Score = 34.7 bits (78), Expect = 0.048
Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 22/149 (14%)
Query: 45 PAGASSPAPRTALQPQESVGAGAGEAALPLPGLLFGA------PAL---LGLALVLALVL 95
P G ++P P + + G GEA L LFG P L + +++++ LV
Sbjct: 135 PHGLATPHPNSDSMRGDGDGLILGEAPATLRPFLFGGRGEGVDPQLYVTITISIIIVLVA 194
Query: 96 VGLV---SWRRRQRRLRGASSAEAPDGDKDAPEPLDKV----IILSPGISDATAPAWPPP 148
G++ W R Q+R R S + +++ +PL + + + D+ P P
Sbjct: 195 TGIIFKFCWDRSQKR-RRPSGQQGALRQEESQQPLTDLSPAGVTVLGAFGDSPTPT--PD 251
Query: 149 GEDP-GTTPPG--HSVPVPATELGSTELV 174
E+P G PG H PA +L LV
Sbjct: 252 HEEPRGGPRPGMPHPKGAPAFQLNRIPLV 280
>gi|7706186 tumor necrosis factor receptor superfamily, member 12A
[Homo sapiens]
Length = 129
Score = 34.3 bits (77), Expect = 0.062
Identities = 35/120 (29%), Positives = 46/120 (38%), Gaps = 27/120 (22%)
Query: 6 RSLRGRDAPAPTPCVPAECFDLLVRHCVACGLLRTPRPKP-----AGASSPAPRTALQPQ 60
RS+ G AP PC + + C+ C R RP A+ PAP L P
Sbjct: 23 RSVAGEQAPGTAPCSRGSSWSADLDKCMDCASCRA-RPHSDFCLGCAAAPPAPFRLLWP- 80
Query: 61 ESVGAGAGEAALPLPGLLFGAPALLGLALVLALVLVGLVSWRRRQRRLRGASSAEAPDGD 120
+L GA L L VL L L G + WRR +RR + + E G+
Sbjct: 81 ----------------ILGGA---LSLTFVLGL-LSGFLVWRRCRRREKFTTPIEETGGE 120
>gi|51988887 SH3 domain containing ring finger 1 [Homo sapiens]
Length = 888
Score = 34.3 bits (77), Expect = 0.062
Identities = 41/151 (27%), Positives = 55/151 (36%), Gaps = 24/151 (15%)
Query: 38 LRTPRPKPAGASSPAPRTALQPQESVGAGAGEAALPLPGLLFGAPALLGLALV------L 91
L +P+P P S A+ + A AA PL +P++ +L +
Sbjct: 628 LASPQPAPLMPGSATHTAAISISRASAPLACAAAAPLT-----SPSITSASLEAEPSGRI 682
Query: 92 ALVLVGLVSWRRRQRRLRGASSAEAPDGDKDAPEPLDKVIILSPGISDATAPAWPPPGED 151
VL GL + G SSA PD KD+ + ++ L G S P PP
Sbjct: 683 VTVLPGLPTSPDSASSACGNSSATKPD--KDSKKEKKGLLKLLSGASTKRKPRVSPPAS- 739
Query: 152 PGTTPPGHSVPVPATELGSTELVTTKTAGPE 182
P ELGS EL GPE
Sbjct: 740 ----------PTLEVELGSAELPLQGAVGPE 760
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 33.9 bits (76), Expect = 0.081
Identities = 33/125 (26%), Positives = 46/125 (36%), Gaps = 12/125 (9%)
Query: 40 TPRPKPAGASSPAPRTALQPQESVGAGAGEAALPLPGLLFGAPALLGLALVLALVLVGLV 99
T P+ + P R E G G G P PG P +L + +V
Sbjct: 2708 TSSPEGPSPARPPRRRTSADVEIRGQGTGRPGQP-PG-----PKVLRKLPGRLVTVVEEK 2761
Query: 100 SWRRRQRRLRGASSAEAPDGDKDAPEPLDKVIILSPGISDATAPAWPPPGEDPGTTPPGH 159
RR+R+ RGA+S P + + P SP + + P PP P P
Sbjct: 2762 ELVRRRRQQRGAASTLVPGVSETSASPG------SPSVRSMSGPESSPPIGGPCEAAPSS 2815
Query: 160 SVPVP 164
S+P P
Sbjct: 2816 SLPTP 2820
Score = 29.3 bits (64), Expect = 2.0
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 146 PPPGED----PGTTPPGHSV-PVPATELGSTELVTTKTAGP 181
PPPG P T PPG++ P AT +T T TA P
Sbjct: 1120 PPPGSSSLLKPLTVPPGYTFPPAAATTTSTTTATATTTAVP 1160
>gi|168229226 hypothetical protein LOC401399 [Homo sapiens]
Length = 899
Score = 33.9 bits (76), Expect = 0.081
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 122 DAPEPLDKVIILSPGISDATAPAWPPPGEDPGTTPPGHSVPVPATELGSTE 172
D P V +LSP ++P+ P G +PP P PA+EL + E
Sbjct: 823 DRPPRCPLVCVLSPPRPSGSSPSLPASGSYQALSPPSRDSPEPASELQAEE 873
Score = 28.9 bits (63), Expect = 2.6
Identities = 17/69 (24%), Positives = 28/69 (40%)
Query: 34 ACGLLRTPRPKPAGASSPAPRTALQPQESVGAGAGEAALPLPGLLFGAPALLGLALVLAL 93
+C + P + +P P L + L ++G AL GL +LAL
Sbjct: 323 SCSVGELPEREGQPPEAPRPLFFLTLEADWAEARARWGLAWEAHVYGVGALFGLVALLAL 382
Query: 94 VLVGLVSWR 102
+ + L+ WR
Sbjct: 383 LALALLPWR 391
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 33.9 bits (76), Expect = 0.081
Identities = 46/157 (29%), Positives = 51/157 (32%), Gaps = 33/157 (21%)
Query: 9 RGRDAPAPTPCVPAECFDLLVRHCVACGLLRTPRPKPAGASSPAPRTALQPQESVGAGAG 68
RG PAP P P R A P P PA PAP A P + A A
Sbjct: 104 RGATPPAP-PRAP--------RGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAA 154
Query: 69 EA-ALPLPGLLFGAPALLGLALVLALVLVGLVSWRRRQRRLRGASSAEAPDGDKDAPEPL 127
A A P PG PA G R QR A+ AP P
Sbjct: 155 AATAPPSPG-----PAQPG---------------PRAQRAAPLAAPPPAPAAPPAVAPPA 194
Query: 128 DKVIILSPGISDATAPAWPPPGEDPGTTPPGHSVPVP 164
P ++ A P PPP + P PP P P
Sbjct: 195 GPRRAPPPAVA-AREPPLPPPPQPP--APPQQQQPPP 228
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 33.5 bits (75), Expect = 0.11
Identities = 39/149 (26%), Positives = 55/149 (36%), Gaps = 22/149 (14%)
Query: 14 PAPTPCVPAECFDLLVRHCVACGLLRTPRPKPAGASSPAPRTALQPQESVGAGAGEAALP 73
PAP P VP E L P P P AS+P P T +P+E A ++ P
Sbjct: 518 PAPPPAVPKE--------------LPAP-PAPPPASAPTPET--EPEEPAQAPPAQST-P 559
Query: 74 LPGLLFGAPALLGLALVLALVLVGLVSWRRRQRRLRGASSAEAPDGDKDAPEPLDKVIIL 133
PG+ AP L+ + G + +L S E P+ ++ P P +
Sbjct: 560 TPGVA-AAPTLVSGGGSTSSTSSGSFEASPVEPQL---PSKEGPEPPEEVPPPTTPPVPK 615
Query: 134 SPGISDATAPAWPPPGEDPGTTPPGHSVP 162
D P PP + G S+P
Sbjct: 616 VEPKGDGIGPTRQPPSQGLGYPKYQKSLP 644
Score = 30.8 bits (68), Expect = 0.69
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 106 RRLRGASSAEAPDGDKDAPEP-LDKVIILSPGISDATAPAWPPPGEDPGTTPPGHSVPVP 164
+RL+ +A AP P + K + P A+AP E+P PP S P P
Sbjct: 502 KRLKAEPAAPPAAPSTPAPPPAVPKELPAPPAPPPASAPTPETEPEEPAQAPPAQSTPTP 561
Query: 165 ATELGST 171
T
Sbjct: 562 GVAAAPT 568
>gi|210031154 zinc finger protein 541 [Homo sapiens]
Length = 1365
Score = 33.5 bits (75), Expect = 0.11
Identities = 50/169 (29%), Positives = 64/169 (37%), Gaps = 16/169 (9%)
Query: 6 RSLRGRDAPAPTPCVPAECFDLLVRHCVACGLLRTPRP--KPAGASSPAPR-TALQPQES 62
RSL +A +P +P DLL R + +TP P PAGAS R TA S
Sbjct: 255 RSLVPPEARSPGSLLPHR--DLLRRIVSSIVHQKTPSPGPAPAGASDSEGRNTACPCPAS 312
Query: 63 VGAGAGEAALPLPGLLFGAPALLGLALVLALVLVGLVSWRRRQRRLRGASSAEAPDGDKD 122
G+ + A P APA L L L +S A +G D
Sbjct: 313 SGSSSCTPAGP-----HAAPAALDTELPEEPCLP---QKEPATDVFTAPNSRAAENGAPD 364
Query: 123 APEPLDKVIILSPGISDATAPAWPPPGEDPGTTPPGHSVPVPATELGST 171
PEP +L + +TA WP G P P VPA+ S+
Sbjct: 365 PPEPEPDTALLQ---ARSTAECWPEGGSVPACLPLFRGQTVPASSQPSS 410
>gi|169203406 PREDICTED: hypothetical protein [Homo sapiens]
Length = 145
Score = 33.1 bits (74), Expect = 0.14
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 46 AGASSPAPRTALQPQESVGAGAGEAALPLP 75
AGA++PAP A P+E G G + LPLP
Sbjct: 72 AGAAAPAPAAASLPEEPDGGGGPDDLLPLP 101
>gi|169202578 PREDICTED: hypothetical protein [Homo sapiens]
Length = 145
Score = 33.1 bits (74), Expect = 0.14
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 46 AGASSPAPRTALQPQESVGAGAGEAALPLP 75
AGA++PAP A P+E G G + LPLP
Sbjct: 72 AGAAAPAPAAASLPEEPDGGGGPDDLLPLP 101
>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
Length = 639
Score = 33.1 bits (74), Expect = 0.14
Identities = 35/154 (22%), Positives = 53/154 (34%), Gaps = 19/154 (12%)
Query: 36 GLLRTPRPKPAGASSPAPRTALQPQESVGAGAGEAALPLPGLLFGAPALLGLALVLALVL 95
G++ P P P+G P P L P + P + P
Sbjct: 476 GMMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSSSMASSTPLPWQQNTTTTTTS 535
Query: 96 VGLVS---WRRRQRRLRGASSAEAPDGDKDAPEPLDKVIILSPGISDATAPAWPPPGEDP 152
G S W+++Q A++A +P + P ++ L PG+ P PPP P
Sbjct: 536 AGTGSIPPWQQQQ-----AAAAASPGAPQMQGNP--TMVPLPPGVQPPLPPGAPPP---P 585
Query: 153 GTTPPGHS------VPVPATELGSTELVTTKTAG 180
PPG + P P + + VT G
Sbjct: 586 PPPPPGSAGMMYAPPPPPPPPMDPSNFVTMMGMG 619
Score = 30.0 bits (66), Expect = 1.2
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 143 PAW---PPPGEDPGTTPPGHSVPVPATE-LGST 171
P W PPP + G PPGH P P + LGST
Sbjct: 422 PPWMQPPPPPMNQGPHPPGHHGPPPMDQYLGST 454
>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
Length = 1120
Score = 33.1 bits (74), Expect = 0.14
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 125 EPLDKVIILSPGISDAT-APAWPPPGEDPGTTPPGHSVPVP 164
EPL + +L+ G++ AT PA P P PG +PP S+P P
Sbjct: 918 EPL-QTALLAFGVASATPGPAAPLPSPTPGESPPASSLPQP 957
>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
Length = 1202
Score = 33.1 bits (74), Expect = 0.14
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 125 EPLDKVIILSPGISDAT-APAWPPPGEDPGTTPPGHSVPVP 164
EPL + +L+ G++ AT PA P P PG +PP S+P P
Sbjct: 1000 EPL-QTALLAFGVASATPGPAAPLPSPTPGESPPASSLPQP 1039
>gi|69885149 Fc receptor-like and mucin-like 1 [Homo sapiens]
Length = 376
Score = 33.1 bits (74), Expect = 0.14
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 107 RLRGASSAEAPDGDKDAPEPLDKVIILSPGISDATAPAWPPPGEDPGTTPPGHSVPV 163
R++GASS+ AP AP+ +PG + AP PP P + PG S P+
Sbjct: 276 RVQGASSSAAPPTLNPAPQKS-----AAPGTAPEEAPGPLPPPPTPSSEDPGFSSPL 327
>gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]
Length = 638
Score = 32.7 bits (73), Expect = 0.18
Identities = 30/126 (23%), Positives = 45/126 (35%), Gaps = 13/126 (10%)
Query: 36 GLLRTPRPKPAGASSPAPRTALQPQESVGAGAGEAALPLPGLLFGAPALLGLALVLALVL 95
G++ P P P+G P P L P + P + P
Sbjct: 476 GMMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSSSMASSTPLPWQQNTTTTTTS 535
Query: 96 VGLVS---WRRRQRRLRGASSAEAPDGDKDAPEPLDKVIILSPGISDATAPAWPPPGEDP 152
G S W+++Q A++A +P + P ++ L PG+ P PPP P
Sbjct: 536 AGTGSIPPWQQQQ-----AAAAASPGAPQMQGNPT--MVPLPPGVQPPLPPGAPPP---P 585
Query: 153 GTTPPG 158
PPG
Sbjct: 586 PPPPPG 591
Score = 30.0 bits (66), Expect = 1.2
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 143 PAW---PPPGEDPGTTPPGHSVPVPATE-LGST 171
P W PPP + G PPGH P P + LGST
Sbjct: 422 PPWMQPPPPPMNQGPHPPGHHGPPPMDQYLGST 454
>gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens]
Length = 987
Score = 32.7 bits (73), Expect = 0.18
Identities = 45/161 (27%), Positives = 55/161 (34%), Gaps = 26/161 (16%)
Query: 41 PRPKPAGAS-----SPAPRTALQPQESVGAGAGEAALPLPGLLFGAPALLGLALVLALVL 95
P P+ AGA+ SP +L P + LP P P L L L+ A +
Sbjct: 347 PCPESAGAATTEALSPPKTPSLLPPLGLSQSGPPGLLPSPSFDSKPPTTL-LGLIPAPSM 405
Query: 96 VGLVSWRRRQRRLRGASSAEAPDGDKDAPEPLDKVIIL----SPGISDATAPAW------ 145
V + A +A P AP P K L + S APA
Sbjct: 406 VPATDTKAPPTLQ--AETATKPQATS-APSPAPKQSFLFGTQNTSPSSPAAPAASSASPM 462
Query: 146 -------PPPGEDPGTTPPGHSVPVPATELGSTELVTTKTA 179
PP E G TPPG SV A S T+ TA
Sbjct: 463 FKPIFTAPPKSEKEGPTPPGPSVTATAPSSSSLPTTTSTTA 503
>gi|26051278 nuclear pore membrane protein 121 [Homo sapiens]
Length = 984
Score = 32.7 bits (73), Expect = 0.18
Identities = 45/161 (27%), Positives = 55/161 (34%), Gaps = 26/161 (16%)
Query: 41 PRPKPAGAS-----SPAPRTALQPQESVGAGAGEAALPLPGLLFGAPALLGLALVLALVL 95
P P+ AGA+ SP +L P + LP P P L L L+ A +
Sbjct: 347 PCPESAGAATTEALSPPKTPSLLPPLGLSQSGPPGLLPSPSFDSKPPTTL-LGLIPAPSM 405
Query: 96 VGLVSWRRRQRRLRGASSAEAPDGDKDAPEPLDKVIIL----SPGISDATAPAW------ 145
V + A +A P AP P K L + S APA
Sbjct: 406 VPATDTKAPPTLQ--AETATKPQATS-APSPAPKQSFLFGTQNTSPSSPAAPAASSAPPM 462
Query: 146 -------PPPGEDPGTTPPGHSVPVPATELGSTELVTTKTA 179
PP E G TPPG SV A S T+ TA
Sbjct: 463 FKPIFTAPPKSEKEGPTPPGPSVTATAPSSSSLPTTTSTTA 503
>gi|10835203 advanced glycosylation end product-specific receptor
isoform 1 precursor [Homo sapiens]
Length = 404
Score = 32.3 bits (72), Expect = 0.24
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 12/62 (19%)
Query: 64 GAGAGEAALPLPGLLFGAPALLGLALVLALVLVGLVSWRRRQRRLRGASSAEAPDGDKDA 123
G+G G AL L G+L G L A +L+G++ W+RRQRR +AP+ ++
Sbjct: 335 GSGLGTLALAL-GILGG--------LGTAALLIGVILWQRRQRR---GEERKAPENQEEE 382
Query: 124 PE 125
E
Sbjct: 383 EE 384
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.136 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,602,729
Number of Sequences: 37866
Number of extensions: 747408
Number of successful extensions: 5158
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 338
Number of HSP's that attempted gapping in prelim test: 4318
Number of HSP's gapped (non-prelim): 1162
length of query: 184
length of database: 18,247,518
effective HSP length: 96
effective length of query: 88
effective length of database: 14,612,382
effective search space: 1285889616
effective search space used: 1285889616
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.