Guide to the Human Genome
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Name: LOC401399 Sequence: fasta or formatted (899aa) NCBI GI: 168229226
Description:

hypothetical protein LOC401399

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.1        109           5
 C cysteine            2.4         22           2
 D aspartate           2.9         26           2
 E glutamate           4.7         42           2
 F phenylalanine       3.2         29           2
 G glycine            11.5        103           3
 H histidine           1.1         10           1
 I isoleucine          1.0          9           1
 K lysine              0.8          7           1
 L leucine            16.7        150           4
 M methionine          0.6          5           1
 N asparagine          0.8          7           1
 P proline            12.3        111           2
 Q glutamine           2.3         21           1
 R arginine            6.3         57           4
 S serine             10.8         97           3
 T threonine           4.4         40           2
 V valine              2.9         26           1
 W tryptophan          1.9         17           2
 Y tyrosine            1.2         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC401399 
PRRT3                 0.064   proline-rich transmembrane protein 3 
FLJ22184              0.014   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.012   PREDICTED: hypothetical protein LOC80164 
MUC2                  0.012   mucin 2 precursor 
MBD6                  0.012   methyl-CpG binding domain protein 6 
LOC100294420          0.012   PREDICTED: similar to mucin 2 
SRCAP                 0.011   Snf2-related CBP activator protein 
FLJ22184              0.011   PREDICTED: hypothetical protein FLJ22184 
MUPCDH                0.011   mucin and cadherin-like isoform 1 
TAF4                  0.010   TBP-associated factor 4 
COL3A1                0.010   collagen type III alpha 1 preproprotein 
MUC12                 0.010   PREDICTED: mucin 12 
HDAC7                 0.009   histone deacetylase 7 isoform a 
MAPK8IP2              0.009   mitogen-activated protein kinase 8 interacting protei...
MAPK8IP2              0.009   mitogen-activated protein kinase 8 interacting protei...
KIAA1522              0.009   hypothetical protein LOC57648 
ZC3H4                 0.008   zinc finger CCCH-type containing 4 
KIAA0754              0.008   hypothetical protein LOC643314 
MUC5AC                0.008   mucin 5AC 
NUP214                0.008   nucleoporin 214kDa 
NFATC3                0.008   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.008   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.008   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.008   nuclear factor of activated T-cells, cytoplasmic, cal...
LOC100132635          0.008   PREDICTED: similar to mucin 5, partial 
MUC4                  0.008   mucin 4 isoform a 
MUC5B                 0.008   mucin 5, subtype B, tracheobronchial 
GRIN2D                0.008   N-methyl-D-aspartate receptor subunit 2D precursor ...
ANKRD17               0.008   ankyrin repeat domain protein 17 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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