Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 160948599
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|160948599 integrator complex subunit 1 [Homo sapiens]
(2190 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|160948599 integrator complex subunit 1 [Homo sapiens] 4305 0.0
gi|20357588 TBP-associated factor 1 isoform 2 [Homo sapiens] 39 0.056
gi|20357585 TBP-associated factor 1 isoform 1 [Homo sapiens] 39 0.056
gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens] 37 0.21
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 37 0.21
gi|110832843 TBP-associated factor 4 [Homo sapiens] 37 0.28
gi|38176300 nestin [Homo sapiens] 35 0.81
gi|170016061 spectrin, beta, non-erythrocytic 5 [Homo sapiens] 35 0.81
gi|17978475 oligodendrocyte lineage transcription factor 2 [Homo... 35 1.1
gi|42476164 POU class 2 homeobox 1 [Homo sapiens] 34 1.4
gi|239754458 PREDICTED: hypothetical protein [Homo sapiens] 34 1.4
gi|239749008 PREDICTED: hypothetical protein XP_002346879 [Homo ... 34 1.4
gi|239743028 PREDICTED: hypothetical protein XP_002342721 [Homo ... 34 1.4
gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo ... 34 1.4
gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo ... 34 1.4
gi|12597657 receptor accessory protein 1 [Homo sapiens] 34 1.8
gi|81295809 pericentrin [Homo sapiens] 34 1.8
gi|188536004 zinc finger protein 469 [Homo sapiens] 33 3.1
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 33 3.1
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 33 3.1
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 33 3.1
gi|116256363 transmembrane protease, serine 13 [Homo sapiens] 33 3.1
gi|10947135 ATP-binding cassette, sub-family F, member 1 isoform... 33 4.0
gi|69354671 ATP-binding cassette, sub-family F, member 1 isoform... 33 4.0
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap... 33 4.0
gi|78000163 sorbin and SH3 domain containing 1 isoform 3 [Homo s... 33 4.0
gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens] 33 4.0
gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens] 33 4.0
gi|193083185 synaptopodin 2 isoform b [Homo sapiens] 33 4.0
gi|33519444 amiloride-sensitive cation channel 4 isoform 2 [Homo... 32 5.2
>gi|160948599 integrator complex subunit 1 [Homo sapiens]
Length = 2190
Score = 4305 bits (11165), Expect = 0.0
Identities = 2190/2190 (100%), Positives = 2190/2190 (100%)
Query: 1 MNRAKPTTVRRPSAAAKPSGHPPPGDFIALGSKGQANESKTASTLLKPAPSGLPSERKRD 60
MNRAKPTTVRRPSAAAKPSGHPPPGDFIALGSKGQANESKTASTLLKPAPSGLPSERKRD
Sbjct: 1 MNRAKPTTVRRPSAAAKPSGHPPPGDFIALGSKGQANESKTASTLLKPAPSGLPSERKRD 60
Query: 61 AAAALSSASALTGLTKRPKLSSTPPLSALGRLAEAAVAEKRAISPSIKEPSVVPIEVLPT 120
AAAALSSASALTGLTKRPKLSSTPPLSALGRLAEAAVAEKRAISPSIKEPSVVPIEVLPT
Sbjct: 61 AAAALSSASALTGLTKRPKLSSTPPLSALGRLAEAAVAEKRAISPSIKEPSVVPIEVLPT 120
Query: 121 VLLDEIEAAELEGNDDRIEGVLCGAVKQLKVTRAKPDSTLYLSLMYLAKIKPNIFATEGV 180
VLLDEIEAAELEGNDDRIEGVLCGAVKQLKVTRAKPDSTLYLSLMYLAKIKPNIFATEGV
Sbjct: 121 VLLDEIEAAELEGNDDRIEGVLCGAVKQLKVTRAKPDSTLYLSLMYLAKIKPNIFATEGV 180
Query: 181 IEALCSLLRRDASINFKAKGNSLVSVLACNLLMAAYEEDENWPEIFVKVYIEDSLGERIW 240
IEALCSLLRRDASINFKAKGNSLVSVLACNLLMAAYEEDENWPEIFVKVYIEDSLGERIW
Sbjct: 181 IEALCSLLRRDASINFKAKGNSLVSVLACNLLMAAYEEDENWPEIFVKVYIEDSLGERIW 240
Query: 241 VDSPHCKTFVDNIQTAFNTRMPPRSVLLQGEAGRVAGDLGAGSSPHPSLTEEEDSQTELL 300
VDSPHCKTFVDNIQTAFNTRMPPRSVLLQGEAGRVAGDLGAGSSPHPSLTEEEDSQTELL
Sbjct: 241 VDSPHCKTFVDNIQTAFNTRMPPRSVLLQGEAGRVAGDLGAGSSPHPSLTEEEDSQTELL 300
Query: 301 IAEEKLSPEQEGQLMPRYEELAESVEEYVLDMLRDQLNRRQPIDNVSRNLLRLLTSTCGY 360
IAEEKLSPEQEGQLMPRYEELAESVEEYVLDMLRDQLNRRQPIDNVSRNLLRLLTSTCGY
Sbjct: 301 IAEEKLSPEQEGQLMPRYEELAESVEEYVLDMLRDQLNRRQPIDNVSRNLLRLLTSTCGY 360
Query: 361 KEVRLLAVQKLEMWLQNPKLTRPAQDLLMSVCMNCNTHGSEDMDVISHLIKIRLKPKVLL 420
KEVRLLAVQKLEMWLQNPKLTRPAQDLLMSVCMNCNTHGSEDMDVISHLIKIRLKPKVLL
Sbjct: 361 KEVRLLAVQKLEMWLQNPKLTRPAQDLLMSVCMNCNTHGSEDMDVISHLIKIRLKPKVLL 420
Query: 421 NHFMLCIRELLSAHKDNLGTTIKLVIFNELSSARNPNNMQVLYTALQHSSELAPKFLAMV 480
NHFMLCIRELLSAHKDNLGTTIKLVIFNELSSARNPNNMQVLYTALQHSSELAPKFLAMV
Sbjct: 421 NHFMLCIRELLSAHKDNLGTTIKLVIFNELSSARNPNNMQVLYTALQHSSELAPKFLAMV 480
Query: 481 FQDLLTNKDDYLRASRALLREIIKQTKHEINFQAFCLGLMQERKEPQYLEMEFKERFVVH 540
FQDLLTNKDDYLRASRALLREIIKQTKHEINFQAFCLGLMQERKEPQYLEMEFKERFVVH
Sbjct: 481 FQDLLTNKDDYLRASRALLREIIKQTKHEINFQAFCLGLMQERKEPQYLEMEFKERFVVH 540
Query: 541 ITDVLAVSMMLGITAQVKEAGIAWDKGEKRNLEVLRSFQNQIAAIQRDAVWWLHTVVPSI 600
ITDVLAVSMMLGITAQVKEAGIAWDKGEKRNLEVLRSFQNQIAAIQRDAVWWLHTVVPSI
Sbjct: 541 ITDVLAVSMMLGITAQVKEAGIAWDKGEKRNLEVLRSFQNQIAAIQRDAVWWLHTVVPSI 600
Query: 601 SKLAPKDYVHCLHKVLFTEQPETYYKWDNWPPESDRNFFLRLCSEVPILEDTLMRILVIG 660
SKLAPKDYVHCLHKVLFTEQPETYYKWDNWPPESDRNFFLRLCSEVPILEDTLMRILVIG
Sbjct: 601 SKLAPKDYVHCLHKVLFTEQPETYYKWDNWPPESDRNFFLRLCSEVPILEDTLMRILVIG 660
Query: 661 LSRELPLGPADAMELADHLVKRAAAVQADDVEVLKVGRTQLIDAVLNLCTYHHPENIQLP 720
LSRELPLGPADAMELADHLVKRAAAVQADDVEVLKVGRTQLIDAVLNLCTYHHPENIQLP
Sbjct: 661 LSRELPLGPADAMELADHLVKRAAAVQADDVEVLKVGRTQLIDAVLNLCTYHHPENIQLP 720
Query: 721 PGYQPPNLAISTLYWKAWPLLLVVAAFNPENIGLAAWEEYPTLKMLMEMVMTNNYSYPPC 780
PGYQPPNLAISTLYWKAWPLLLVVAAFNPENIGLAAWEEYPTLKMLMEMVMTNNYSYPPC
Sbjct: 721 PGYQPPNLAISTLYWKAWPLLLVVAAFNPENIGLAAWEEYPTLKMLMEMVMTNNYSYPPC 780
Query: 781 TLTDEETRTEMLNRELQTAQREKQEILAFEGHLAAASTKQTITESSSLLLSQLTSLDPQG 840
TLTDEETRTEMLNRELQTAQREKQEILAFEGHLAAASTKQTITESSSLLLSQLTSLDPQG
Sbjct: 781 TLTDEETRTEMLNRELQTAQREKQEILAFEGHLAAASTKQTITESSSLLLSQLTSLDPQG 840
Query: 841 PPRRPPPHILDQVKSLNQSLRLGHLLCRSRNPDFLLHIIQRQASSQSMPWLADLVQSSEG 900
PPRRPPPHILDQVKSLNQSLRLGHLLCRSRNPDFLLHIIQRQASSQSMPWLADLVQSSEG
Sbjct: 841 PPRRPPPHILDQVKSLNQSLRLGHLLCRSRNPDFLLHIIQRQASSQSMPWLADLVQSSEG 900
Query: 901 SLDVLPVQCLCEFLLHDAVDDAASGEEDDEGESKEQKAKKRQRQQKQRQLLGRLQDLLLG 960
SLDVLPVQCLCEFLLHDAVDDAASGEEDDEGESKEQKAKKRQRQQKQRQLLGRLQDLLLG
Sbjct: 901 SLDVLPVQCLCEFLLHDAVDDAASGEEDDEGESKEQKAKKRQRQQKQRQLLGRLQDLLLG 960
Query: 961 PKADEQTTCEVLDYFLRRLGSSQVASRVLAMKGLSLVLSEGSLRDGEEKEPPMEEDVGDT 1020
PKADEQTTCEVLDYFLRRLGSSQVASRVLAMKGLSLVLSEGSLRDGEEKEPPMEEDVGDT
Sbjct: 961 PKADEQTTCEVLDYFLRRLGSSQVASRVLAMKGLSLVLSEGSLRDGEEKEPPMEEDVGDT 1020
Query: 1021 DVLQGYQWLLRDLPRLPLFDSVRSTTALALQQAIHMETDPQTISAYLIYLSQHTPVEEQA 1080
DVLQGYQWLLRDLPRLPLFDSVRSTTALALQQAIHMETDPQTISAYLIYLSQHTPVEEQA
Sbjct: 1021 DVLQGYQWLLRDLPRLPLFDSVRSTTALALQQAIHMETDPQTISAYLIYLSQHTPVEEQA 1080
Query: 1081 QHSDLALDVARLVVERSTIMSHLFSKLSPSAASDAVLSALLSIFSRYVRRMRQSKEGEEV 1140
QHSDLALDVARLVVERSTIMSHLFSKLSPSAASDAVLSALLSIFSRYVRRMRQSKEGEEV
Sbjct: 1081 QHSDLALDVARLVVERSTIMSHLFSKLSPSAASDAVLSALLSIFSRYVRRMRQSKEGEEV 1140
Query: 1141 YSWSESQDQVFLRWSSGETATMHILVVHAMVILLTLGPPRADDSEFQALLDIWFPEEKPL 1200
YSWSESQDQVFLRWSSGETATMHILVVHAMVILLTLGPPRADDSEFQALLDIWFPEEKPL
Sbjct: 1141 YSWSESQDQVFLRWSSGETATMHILVVHAMVILLTLGPPRADDSEFQALLDIWFPEEKPL 1200
Query: 1201 PTAFLVDTSEEALLLPDWLKLRMIRSEVLRLVDAALQDLEPQQLLLFVQSFGIPVSSMSK 1260
PTAFLVDTSEEALLLPDWLKLRMIRSEVLRLVDAALQDLEPQQLLLFVQSFGIPVSSMSK
Sbjct: 1201 PTAFLVDTSEEALLLPDWLKLRMIRSEVLRLVDAALQDLEPQQLLLFVQSFGIPVSSMSK 1260
Query: 1261 LLQFLDQAVAHDPQTLEQNIMDKNYMAHLVEVQHERGASGGQTFHSLLTASLPPRRDSTE 1320
LLQFLDQAVAHDPQTLEQNIMDKNYMAHLVEVQHERGASGGQTFHSLLTASLPPRRDSTE
Sbjct: 1261 LLQFLDQAVAHDPQTLEQNIMDKNYMAHLVEVQHERGASGGQTFHSLLTASLPPRRDSTE 1320
Query: 1321 APKPKSSPEQPIGQGRIRVGTQLRVLGPEDDLAGMFLQIFPLSPDPRWQSSSPRPVALAL 1380
APKPKSSPEQPIGQGRIRVGTQLRVLGPEDDLAGMFLQIFPLSPDPRWQSSSPRPVALAL
Sbjct: 1321 APKPKSSPEQPIGQGRIRVGTQLRVLGPEDDLAGMFLQIFPLSPDPRWQSSSPRPVALAL 1380
Query: 1381 QQALGQELARVVQGSPEVPGITVRVLQALATLLSSPHGGALVMSMHRSHFLACPLLRQLC 1440
QQALGQELARVVQGSPEVPGITVRVLQALATLLSSPHGGALVMSMHRSHFLACPLLRQLC
Sbjct: 1381 QQALGQELARVVQGSPEVPGITVRVLQALATLLSSPHGGALVMSMHRSHFLACPLLRQLC 1440
Query: 1441 QYQRCVPQDTGFSSLFLKVLLQMLQWLDSPGVEGGPLRAQLRMLASQASAGRRLSDVRGG 1500
QYQRCVPQDTGFSSLFLKVLLQMLQWLDSPGVEGGPLRAQLRMLASQASAGRRLSDVRGG
Sbjct: 1441 QYQRCVPQDTGFSSLFLKVLLQMLQWLDSPGVEGGPLRAQLRMLASQASAGRRLSDVRGG 1500
Query: 1501 LLRLAEALAFRQDLEVVSSTVRAVIATLRSGEQCSVEPDLISKVLQGLIEVRSPHLEELL 1560
LLRLAEALAFRQDLEVVSSTVRAVIATLRSGEQCSVEPDLISKVLQGLIEVRSPHLEELL
Sbjct: 1501 LLRLAEALAFRQDLEVVSSTVRAVIATLRSGEQCSVEPDLISKVLQGLIEVRSPHLEELL 1560
Query: 1561 TAFFSATADAASPFPACKPVVVVSSLLLQEEEPLAGGKPGADGGSLEAVRLGPSSGLLVD 1620
TAFFSATADAASPFPACKPVVVVSSLLLQEEEPLAGGKPGADGGSLEAVRLGPSSGLLVD
Sbjct: 1561 TAFFSATADAASPFPACKPVVVVSSLLLQEEEPLAGGKPGADGGSLEAVRLGPSSGLLVD 1620
Query: 1621 WLEMLDPEVVSSCPDLQLRLLFSRRKGKGQAQVPSFRPYLLTLFTHQSSWPTLHQCIRVL 1680
WLEMLDPEVVSSCPDLQLRLLFSRRKGKGQAQVPSFRPYLLTLFTHQSSWPTLHQCIRVL
Sbjct: 1621 WLEMLDPEVVSSCPDLQLRLLFSRRKGKGQAQVPSFRPYLLTLFTHQSSWPTLHQCIRVL 1680
Query: 1681 LGKSREQRFDPSASLDFLWACIHVPRIWQGRDQRTPQKRREELVLRVQGPELISLVELIL 1740
LGKSREQRFDPSASLDFLWACIHVPRIWQGRDQRTPQKRREELVLRVQGPELISLVELIL
Sbjct: 1681 LGKSREQRFDPSASLDFLWACIHVPRIWQGRDQRTPQKRREELVLRVQGPELISLVELIL 1740
Query: 1741 AEAETRSQDGDTAACSLIQARLPLLLSCCCGDDESVRKVTEHLSGCIQQWGDSVLGRRCR 1800
AEAETRSQDGDTAACSLIQARLPLLLSCCCGDDESVRKVTEHLSGCIQQWGDSVLGRRCR
Sbjct: 1741 AEAETRSQDGDTAACSLIQARLPLLLSCCCGDDESVRKVTEHLSGCIQQWGDSVLGRRCR 1800
Query: 1801 DLLLQLYLQRPELRVPVPEVLLHSEGAASSSVCKLDGLIHRFITLLADTSDSRALENRGA 1860
DLLLQLYLQRPELRVPVPEVLLHSEGAASSSVCKLDGLIHRFITLLADTSDSRALENRGA
Sbjct: 1801 DLLLQLYLQRPELRVPVPEVLLHSEGAASSSVCKLDGLIHRFITLLADTSDSRALENRGA 1860
Query: 1861 DASMACRKLAVAHPLLLLRHLPMIAALLHGRTHLNFQEFRQQNHLSCFLHVLGLLELLQP 1920
DASMACRKLAVAHPLLLLRHLPMIAALLHGRTHLNFQEFRQQNHLSCFLHVLGLLELLQP
Sbjct: 1861 DASMACRKLAVAHPLLLLRHLPMIAALLHGRTHLNFQEFRQQNHLSCFLHVLGLLELLQP 1920
Query: 1921 HVFRSEHQGALWDCLLSFIRLLLNYRKSSRHLAAFINKFVQFIHKYITYNAPAAISFLQK 1980
HVFRSEHQGALWDCLLSFIRLLLNYRKSSRHLAAFINKFVQFIHKYITYNAPAAISFLQK
Sbjct: 1921 HVFRSEHQGALWDCLLSFIRLLLNYRKSSRHLAAFINKFVQFIHKYITYNAPAAISFLQK 1980
Query: 1981 HADPLHDLSFDNSDLVMLKSLLAGLSLPSRDDRTDRGLDEEGEEESSAGSLPLVSVSLFT 2040
HADPLHDLSFDNSDLVMLKSLLAGLSLPSRDDRTDRGLDEEGEEESSAGSLPLVSVSLFT
Sbjct: 1981 HADPLHDLSFDNSDLVMLKSLLAGLSLPSRDDRTDRGLDEEGEEESSAGSLPLVSVSLFT 2040
Query: 2041 PLTAAEMAPYMKRLSRGQTVEDLLEVLSDIDEMSRRRPEILSFFSTNLQRLMSSAEECCR 2100
PLTAAEMAPYMKRLSRGQTVEDLLEVLSDIDEMSRRRPEILSFFSTNLQRLMSSAEECCR
Sbjct: 2041 PLTAAEMAPYMKRLSRGQTVEDLLEVLSDIDEMSRRRPEILSFFSTNLQRLMSSAEECCR 2100
Query: 2101 NLAFSLALRSMQNSPSIAAAFLPTFMYCLGSQDFEVVQTALRNLPEYALLCQEHAAVLLH 2160
NLAFSLALRSMQNSPSIAAAFLPTFMYCLGSQDFEVVQTALRNLPEYALLCQEHAAVLLH
Sbjct: 2101 NLAFSLALRSMQNSPSIAAAFLPTFMYCLGSQDFEVVQTALRNLPEYALLCQEHAAVLLH 2160
Query: 2161 RAFLVGMYGQMDPSAQISEALRILHMEAVM 2190
RAFLVGMYGQMDPSAQISEALRILHMEAVM
Sbjct: 2161 RAFLVGMYGQMDPSAQISEALRILHMEAVM 2190
>gi|20357588 TBP-associated factor 1 isoform 2 [Homo sapiens]
Length = 1872
Score = 38.9 bits (89), Expect = 0.056
Identities = 52/240 (21%), Positives = 91/240 (37%), Gaps = 24/240 (10%)
Query: 699 TQLIDAVLNLCTYHHPENIQLPPGYQPPNLAISTLYWKAWPLLLVVAAFNPENIGLAAWE 758
TQ + AV + +HHP N + P Y + P+ L +NI ++
Sbjct: 1516 TQKMMAVPDSWPFHHPVNKKFVPDYYKVIVN---------PMDLETIR---KNISKHKYQ 1563
Query: 759 EYPTLKMLMEMVMTNNYSYPPCTLTDEETRTEMLNRELQTAQREKQEILAFEGHLAAAST 818
+ + +++ N+ Y +T E++N QT + ++ HL
Sbjct: 1564 SRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQT-------LTEYDEHLTQLEK 1616
Query: 819 KQTITESSSLLLSQLTSLDPQ--GPPRRPPPHILDQVKSLNQSLRLGHLLCRSRNP--DF 874
+ ++L ++L SLDP GP PP + D SL+ S S D
Sbjct: 1617 DICTAKEAALEEAELESLDPMTPGPYTPQPPDLYDTNTSLSMSRDASVFQDESNMSVLDI 1676
Query: 875 LLHIIQRQASSQSMPWLADLVQSSEGSLDVLPVQCLCE-FLLHDAVDDAASGEEDDEGES 933
++Q + + DL EG++ L E L+ + DD D+EG++
Sbjct: 1677 PSATPEKQVTQEGEDGDGDLADEEEGTVQQPQASVLYEDLLMSEGEDDEEDAGSDEEGDN 1736
>gi|20357585 TBP-associated factor 1 isoform 1 [Homo sapiens]
Length = 1893
Score = 38.9 bits (89), Expect = 0.056
Identities = 52/240 (21%), Positives = 91/240 (37%), Gaps = 24/240 (10%)
Query: 699 TQLIDAVLNLCTYHHPENIQLPPGYQPPNLAISTLYWKAWPLLLVVAAFNPENIGLAAWE 758
TQ + AV + +HHP N + P Y + P+ L +NI ++
Sbjct: 1537 TQKMMAVPDSWPFHHPVNKKFVPDYYKVIVN---------PMDLETIR---KNISKHKYQ 1584
Query: 759 EYPTLKMLMEMVMTNNYSYPPCTLTDEETRTEMLNRELQTAQREKQEILAFEGHLAAAST 818
+ + +++ N+ Y +T E++N QT + ++ HL
Sbjct: 1585 SRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQT-------LTEYDEHLTQLEK 1637
Query: 819 KQTITESSSLLLSQLTSLDPQ--GPPRRPPPHILDQVKSLNQSLRLGHLLCRSRNP--DF 874
+ ++L ++L SLDP GP PP + D SL+ S S D
Sbjct: 1638 DICTAKEAALEEAELESLDPMTPGPYTPQPPDLYDTNTSLSMSRDASVFQDESNMSVLDI 1697
Query: 875 LLHIIQRQASSQSMPWLADLVQSSEGSLDVLPVQCLCE-FLLHDAVDDAASGEEDDEGES 933
++Q + + DL EG++ L E L+ + DD D+EG++
Sbjct: 1698 PSATPEKQVTQEGEDGDGDLADEEEGTVQQPQASVLYEDLLMSEGEDDEEDAGSDEEGDN 1757
>gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens]
Length = 1684
Score = 37.0 bits (84), Expect = 0.21
Identities = 85/398 (21%), Positives = 155/398 (38%), Gaps = 63/398 (15%)
Query: 782 LTDEETRTEMLNRELQTAQREKQEILAFEGHL--AAASTKQTITESSSLLLSQLTSLDPQ 839
L T+ + EL++ + EK ++ A L A S K + E Q LD +
Sbjct: 981 LDSSRKETQTVKEELESLRSEKDQLSASMRDLIQGAESYKNLLLEYEK----QSEQLDVE 1036
Query: 840 GPPRRPPPHILDQVKSLNQSLRLGHLLCR---SRNPDFLLHIIQRQASSQSMPWLADLVQ 896
H +++ L + LR L C S N D L I Q++++ + VQ
Sbjct: 1037 KERANNFEH---RIEDLTRQLRNSTLQCETINSDNEDLLARIETLQSNAKLLEVQILEVQ 1093
Query: 897 SSEGSLDVLPVQCLCEFLLHDAVDDAASGEEDDEGESKEQKAKKR------------QRQ 944
++ +D E + E KEQK K+ Q Q
Sbjct: 1094 RAKAMVDK---------------------ELEAEKLQKEQKIKEHATTVNELEELQVQLQ 1132
Query: 945 QKQRQLLGRLQDLLLGPKADEQTT---CEVLDYFLRRLGSSQVASRVLAMKGLSLVLSEG 1001
++++QL +Q+L L K +QTT E+ DY RL + ++ L K + E
Sbjct: 1133 KEKKQLQKTMQELELVKKDAQQTTLMNMEIADY--ERL--MKELNQKLTNKNNKIEDLEQ 1188
Query: 1002 SLRDGEEKEPPMEEDVGD-TDVLQGYQWLLRDLPRL------PLFDSVRSTTALALQQAI 1054
++ ++K+ ++E++ +Q Y+ + +L L DS ++ T + QA
Sbjct: 1189 EIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAETDHLILQAS 1248
Query: 1055 ---HMETDPQTISAYLIYLSQHTPVEEQAQHSDLALDVARLVVERSTIMSHLFSKLSPSA 1111
+E Q + Y I L++ T E+ H L + S + +
Sbjct: 1249 LKGELEASQQQVEVYKIQLAEITS-EKHKIHEHLKTSAEQHQRTLSAYQQRVTALQEECR 1307
Query: 1112 ASDAVLSALLSIFSRYVRRMRQSKEGEEVYSWSESQDQ 1149
A+ A + + S F Y R+ + ++ S S+++ +
Sbjct: 1308 AAKAEQATVTSEFESYKVRVHNVLKQQKNKSMSQAETE 1345
>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 37.0 bits (84), Expect = 0.21
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 24/123 (19%)
Query: 6 PTTVRRPSAAAKPSGHPPPGDFIALGSKGQANESKTASTLLKPAPSGLPSERKRDAAAAL 65
P+T + PSAAA P +A GS + +LL P P PS + A
Sbjct: 466 PSTSKEPSAAA-----PTGAGGVAPGSGNNSG----GPSLLVPLPVNPPSSPTPSFSDAK 516
Query: 66 SSASALTG---LTKRPKLSSTPPLSALGRLAEAAVAEKRAISPSIKEPSVVPIEVLPTVL 122
++ + L G + P++ + PLS+L ++AE+ AIS I++P +PT+
Sbjct: 517 AAGALLNGPPQFSTAPEIKAPEPLSSL-----KSMAERAAISSGIEDP-------VPTLH 564
Query: 123 LDE 125
L E
Sbjct: 565 LTE 567
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 36.6 bits (83), Expect = 0.28
Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 11/122 (9%)
Query: 4 AKPTTVRRPSAAAKPSGHP--PPGDFIALGSKGQANESKTASTLLKPAPS-----GLPSE 56
A P P+ A+P GHP PP A+ A +A PAP+ G+ +
Sbjct: 269 APPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQ 328
Query: 57 RKRDAAAALSSASALTGLTKRPKLSSTPPLSALGRLAEAAVAEKRAISPSIK----EPSV 112
AAAA + KR ++ P L A+ A I P+++ P+
Sbjct: 329 PGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAA 388
Query: 113 VP 114
VP
Sbjct: 389 VP 390
>gi|38176300 nestin [Homo sapiens]
Length = 1621
Score = 35.0 bits (79), Expect = 0.81
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 918 AVDDAASGEEDDEGESKEQKAKKRQRQQKQRQLLGRLQDLLLGPKADEQTTCEVLDYFLR 977
+V A G +D EG+S++ A Q Q + + L + + P D Q + EV+
Sbjct: 1030 SVKGGAEGLQDPEGQSQQVGAPGLQAPQGLPEAIEPLVEDDVAPGGD-QASPEVMLGSEP 1088
Query: 978 RLGSSQVASRVLAMKGLSLVLSEGSLRDGEEKEPPMEEDVGDTDVLQGYQWLLRDL 1033
+G S + +G+ + G L E EPP+EE+ + +QG + +DL
Sbjct: 1089 AMGESAAGAEPGPGQGVGGLGDPGHLTREEVMEPPLEEESLEAKRVQGLEGPRKDL 1144
>gi|170016061 spectrin, beta, non-erythrocytic 5 [Homo sapiens]
Length = 3639
Score = 35.0 bits (79), Expect = 0.81
Identities = 72/296 (24%), Positives = 106/296 (35%), Gaps = 35/296 (11%)
Query: 1384 LGQELARVVQGSPEVPGITVRVLQALATL-LSSPHGGALVMSMHRSH--------FLACP 1434
L E R+ Q P PG +V +A ATL + G + + H LA
Sbjct: 3236 LQTEACRLGQLHPAAPGGLAKVQEAWATLQAKAQERGQWLAQAAQGHAFLGRCQELLAWA 3295
Query: 1435 LLRQLCQYQRCVPQDTGFSSLFLKVLLQMLQWLDSPGVEGGPLRAQLRMLAS-----QAS 1489
RQ + +D + L ++ Q + ++ LR + + L A
Sbjct: 3296 QERQELASSEELAEDVAGAEQLLGQHEELGQEIRECRLQAQDLRQEGQQLVDNSHFMSAE 3355
Query: 1490 AGRRLSDVRGGLLRLAEALAFRQD-------LEVVSSTVRAVIATLRSGEQCSVEPDLIS 1542
L ++ G L L EA A R L+ + + A L E ++PD
Sbjct: 3356 VTECLQELEGRLQELEEAWALRWQRCAESWGLQKLRQRLEQAEAWLACWEGLLLKPDYGH 3415
Query: 1543 KVLQ-GLIEVRSPHLEELLTAFFSATADAASPFPACKPVVVVSSLLLQEEEPLAGGKPGA 1601
V L+ R LE+LL A F + + LLLQ +E KPG
Sbjct: 3416 SVSDVELLLHRHQDLEKLLAA-------QEEKFAQMQKTEMEQELLLQPQEL----KPGR 3464
Query: 1602 DGGSLEAVRLGPS--SGLLVDWLEMLDPEVVSSCPDLQLRLLFSRRKGKGQAQVPS 1655
G SL + + PS GL E DP+ P ++ L F + G Q S
Sbjct: 3465 AGSSLTSFQWRPSGHQGLGAQLAETRDPQDAKGTPTMEGSLEFKQHLLPGGRQPSS 3520
>gi|17978475 oligodendrocyte lineage transcription factor 2 [Homo
sapiens]
Length = 323
Score = 34.7 bits (78), Expect = 1.1
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 15 AAKPSGHPPPGDFIALGSKGQANESKTASTLLKPAPSGLPSERKRDAAAALSSASA---- 70
+++PS P F+ SKG + + T T+ PS P E + A+ SA A
Sbjct: 9 SSRPSSPEPDDLFLPARSKGSSGSAFTGGTVSSSTPSDCPPELSAELRGAMGSAGAHPGD 68
Query: 71 -LTGLTKRPKLSSTPPLSALGRLAEAAVAEKRAISPSIKE 109
L G + SST ++ + +K+ P +++
Sbjct: 69 KLGGSGFKSSSSSTSSSTSSAAASSTKKDKKQMTEPELQQ 108
>gi|42476164 POU class 2 homeobox 1 [Homo sapiens]
Length = 743
Score = 34.3 bits (77), Expect = 1.4
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 13/101 (12%)
Query: 13 SAAAKPSGHPPPGDFIALGSKGQANESKTASTLLKPAPSGLPSERKRDAAAAL--SSASA 70
SA PS P P + A+E+ T T P S L + + A+ L ++A+A
Sbjct: 517 SAVTSPSLSPSPSASASTSEASSASETSTTQTTSTPLSSPLGTSQVMVTASGLQTAAAAA 576
Query: 71 LTGLTKRPKLSSTPPLSALGRLAEAAVAEKRAISPSIKEPS 111
L G + P +S AA+A ++PS+ PS
Sbjct: 577 LQGAAQLPANASL-----------AAMAAAAGLNPSLMAPS 606
>gi|239754458 PREDICTED: hypothetical protein [Homo sapiens]
Length = 180
Score = 34.3 bits (77), Expect = 1.4
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Query: 13 SAAAKPSGHPPPGDFIALG-----SKG-QANESKTASTLLKPAPSGLPSERKRDAAAALS 66
+AA P PPG ALG S+G +A + +P P G P + + +A
Sbjct: 37 AAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPG 96
Query: 67 SASALTGLTKRPKLSSTPPLSALGRLAEA---AVAEKRAISPSIKEPSVVPIEVLP 119
SAS T P+ S PP + + R+A + R+ P ++ + P++ P
Sbjct: 97 SASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPRPQDGTPPPVDTPP 152
>gi|239749008 PREDICTED: hypothetical protein XP_002346879 [Homo
sapiens]
Length = 180
Score = 34.3 bits (77), Expect = 1.4
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Query: 13 SAAAKPSGHPPPGDFIALG-----SKG-QANESKTASTLLKPAPSGLPSERKRDAAAALS 66
+AA P PPG ALG S+G +A + +P P G P + + +A
Sbjct: 37 AAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPG 96
Query: 67 SASALTGLTKRPKLSSTPPLSALGRLAEA---AVAEKRAISPSIKEPSVVPIEVLP 119
SAS T P+ S PP + + R+A + R+ P ++ + P++ P
Sbjct: 97 SASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPRPQDGTPPPVDTPP 152
>gi|239743028 PREDICTED: hypothetical protein XP_002342721 [Homo
sapiens]
Length = 180
Score = 34.3 bits (77), Expect = 1.4
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Query: 13 SAAAKPSGHPPPGDFIALG-----SKG-QANESKTASTLLKPAPSGLPSERKRDAAAALS 66
+AA P PPG ALG S+G +A + +P P G P + + +A
Sbjct: 37 AAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPG 96
Query: 67 SASALTGLTKRPKLSSTPPLSALGRLAEA---AVAEKRAISPSIKEPSVVPIEVLP 119
SAS T P+ S PP + + R+A + R+ P ++ + P++ P
Sbjct: 97 SASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPRPQDGTPPPVDTPP 152
>gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo
sapiens]
Length = 5033
Score = 34.3 bits (77), Expect = 1.4
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 31/127 (24%)
Query: 920 DDAASGEEDDE---GESKEQKAKKRQRQQKQRQLLGR------LQDLLLGPKADEQT--- 967
D+ GEE+DE E +E+ A++++ ++K+ + L++ LL K E
Sbjct: 1879 DEEEEGEEEDEEEKEEDEEETAQEKEDEEKEEEEAAEGEKEEGLEEGLLQMKLPESVKLQ 1938
Query: 968 TCEVLDYF-------------------LRRLGSSQVASRVLAMKGLSLVLSEGSLRDGEE 1008
C +L+YF + +L ++Q + L +K S+ +E + R E
Sbjct: 1939 MCHLLEYFCDQELQHRVESLAAFAERYVDKLQANQRSRYGLLIKAFSMTAAETARRTREF 1998
Query: 1009 KEPPMEE 1015
+ PP E+
Sbjct: 1999 RSPPQEQ 2005
>gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo
sapiens]
Length = 5038
Score = 34.3 bits (77), Expect = 1.4
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 31/127 (24%)
Query: 920 DDAASGEEDDE---GESKEQKAKKRQRQQKQRQLLGR------LQDLLLGPKADEQT--- 967
D+ GEE+DE E +E+ A++++ ++K+ + L++ LL K E
Sbjct: 1879 DEEEEGEEEDEEEKEEDEEETAQEKEDEEKEEEEAAEGEKEEGLEEGLLQMKLPESVKLQ 1938
Query: 968 TCEVLDYF-------------------LRRLGSSQVASRVLAMKGLSLVLSEGSLRDGEE 1008
C +L+YF + +L ++Q + L +K S+ +E + R E
Sbjct: 1939 MCHLLEYFCDQELQHRVESLAAFAERYVDKLQANQRSRYGLLIKAFSMTAAETARRTREF 1998
Query: 1009 KEPPMEE 1015
+ PP E+
Sbjct: 1999 RSPPQEQ 2005
>gi|12597657 receptor accessory protein 1 [Homo sapiens]
Length = 201
Score = 33.9 bits (76), Expect = 1.8
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 7 TTVRRPSAAAKPSGHPPPGDFIALGSKGQANESKTAS 43
TT+R A A PSG PPPG A G GQ S++AS
Sbjct: 157 TTIRGDGAPA-PSGPPPPGSGRASGKHGQPKMSRSAS 192
>gi|81295809 pericentrin [Homo sapiens]
Length = 3336
Score = 33.9 bits (76), Expect = 1.8
Identities = 54/214 (25%), Positives = 91/214 (42%), Gaps = 17/214 (7%)
Query: 785 EETRTEMLNRELQTAQREKQEILAFEGHLAAASTKQTITESSSLLLSQLTSLDPQGPPRR 844
+ET +++ ELQ EK ++ E A S KQTI L +++ L Q
Sbjct: 748 KETDWKVMKEELQREAEEKLTLMLLELREKAESEKQTIINKFELREAEMRQLQDQ----- 802
Query: 845 PPPHILDQVKSLNQSLRLGHLLCRSRNPDFLLHIIQ--RQASSQSMPWLADLVQSSEGSL 902
ILD +SL + L + D LH Q R+ + LA L + +L
Sbjct: 803 QAAQILDLERSLTEQQGRLQQLEQDLTSDDALHCSQCGREPPTAQDGELAALHVKEDCAL 862
Query: 903 DVLPVQCLCEFL-LHDAVDDAASGEEDD-EGESKEQKAKKRQ--RQQKQRQLLGRLQDLL 958
++ + FL + + S E+D E++EQ A++ Q +++ Q+QLL +L
Sbjct: 863 QLMLAR--SRFLEERKEITEKFSAEQDAFLQEAQEQHARELQLLQERHQQQLLSVTAEL- 919
Query: 959 LGPKADEQTTCEVLDYFLRRLGSSQVASRVLAMK 992
+A Q L L + +A+RV ++
Sbjct: 920 ---EARHQAALGELTASLESKQGALLAARVAELQ 950
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 33.1 bits (74), Expect = 3.1
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 13/107 (12%)
Query: 2 NRAKPTTVR-RPSAAAKPSGHPPPGDFIALGSKGQAN----ESKTASTLLKPA-PSGLPS 55
N KP T + +P +++ SG P PG GS+ Q +S+TA+T KP+ PS P+
Sbjct: 3689 NGMKPATPKAKPGPSSQGSGSPRPGTKTGGGSQPQPASGQLQSETATTPAKPSFPSRSPA 3748
Query: 56 ERKRDAAAALSSASALTGLTKRPK-LSSTPPLSALGRLAEAAVAEKR 101
+ A A S TK P+ P +LG + + KR
Sbjct: 3749 PERLPARAQAKSC------TKGPREAGEQGPHGSLGPKEKGESSTKR 3789
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 33.1 bits (74), Expect = 3.1
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 814 AAASTKQTITESSSLLLSQLTSLDPQGPPRRPPPHILD 851
AAA+ + E S +S T + P GPP PPP D
Sbjct: 212 AAAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAAD 249
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 33.1 bits (74), Expect = 3.1
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 814 AAASTKQTITESSSLLLSQLTSLDPQGPPRRPPPHILD 851
AAA+ + E S +S T + P GPP PPP D
Sbjct: 212 AAAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAAD 249
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 33.1 bits (74), Expect = 3.1
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 814 AAASTKQTITESSSLLLSQLTSLDPQGPPRRPPPHILD 851
AAA+ + E S +S T + P GPP PPP D
Sbjct: 271 AAAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAAD 308
>gi|116256363 transmembrane protease, serine 13 [Homo sapiens]
Length = 567
Score = 33.1 bits (74), Expect = 3.1
Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 7/109 (6%)
Query: 14 AAAKPSGHPPPGDFIALGSKGQANESKTASTLLKPA---PSGLPSERKRDAAAALSSASA 70
A A P+G PP A S QA+ + T PA P+G P R A+ + AS
Sbjct: 22 AQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQASP 81
Query: 71 LTGLTKRPKLSSTPPLSALGRLAEAAVAEKRAISPSIKEPSVVPIEVLP 119
R ++P L++L R + + R+ S + V + P
Sbjct: 82 AQASPAR----ASPALASLSRSSSGRSSSARSASVTTSPTRVYLVRATP 126
>gi|10947135 ATP-binding cassette, sub-family F, member 1 isoform b
[Homo sapiens]
Length = 807
Score = 32.7 bits (73), Expect = 4.0
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 27/114 (23%)
Query: 918 AVDDAASGEEDDEGESKEQKAKKRQRQQK-------------------QRQLLGRLQDLL 958
AV+D +GEE+ + KEQ+ +++Q+QQK +++L+ RL+ L
Sbjct: 46 AVEDKQAGEEEKVLKEKEQQQQQQQQQQKKKRDTRKGRRKKDVDDDGEEKELMERLKKLS 105
Query: 959 LGPKADEQTTCEVLDYFLRRLGSSQVASRVLAMKGLSLVLSEGSLRDGEEKEPP 1012
+ P +DE+ + + R G V A +L+ + + EEK PP
Sbjct: 106 V-PTSDEE---DEVPAPKPRGGKKTKGGNVFA----ALIQDQSEEEEEEEKHPP 151
>gi|69354671 ATP-binding cassette, sub-family F, member 1 isoform a
[Homo sapiens]
Length = 845
Score = 32.7 bits (73), Expect = 4.0
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 27/114 (23%)
Query: 918 AVDDAASGEEDDEGESKEQKAKKRQRQQK-------------------QRQLLGRLQDLL 958
AV+D +GEE+ + KEQ+ +++Q+QQK +++L+ RL+ L
Sbjct: 46 AVEDKQAGEEEKVLKEKEQQQQQQQQQQKKKRDTRKGRRKKDVDDDGEEKELMERLKKLS 105
Query: 959 LGPKADEQTTCEVLDYFLRRLGSSQVASRVLAMKGLSLVLSEGSLRDGEEKEPP 1012
+ P +DE+ + + R G V A +L+ + + EEK PP
Sbjct: 106 V-PTSDEE---DEVPAPKPRGGKKTKGGNVFA----ALIQDQSEEEEEEEKHPP 151
>gi|111120318 NK6 transcription factor related, locus 1 [Homo
sapiens]
Length = 367
Score = 32.7 bits (73), Expect = 4.0
Identities = 34/105 (32%), Positives = 42/105 (40%), Gaps = 14/105 (13%)
Query: 13 SAAAKPSGHPPPGDFIALGSKGQANESKTASTLLKPAPSGLPSERKRDAAAALSSASALT 72
S AA PS P GS ++ S +AS+ A + + AAAA S A L
Sbjct: 111 SGAALPSASPS-------GSSSSSSSSASASSASAAAAAAAAA-----AAAASSPAGLLA 158
Query: 73 GLTKRPKLSSTPPLSAL--GRLAEAAVAEKRAISPSIKEPSVVPI 115
GL + LS PP L A A A R P + P PI
Sbjct: 159 GLPRFSSLSPPPPPPGLYFSPSAAAVAAVGRYPKPLAELPGRTPI 203
>gi|78000163 sorbin and SH3 domain containing 1 isoform 3 [Homo
sapiens]
Length = 1292
Score = 32.7 bits (73), Expect = 4.0
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 16/95 (16%)
Query: 24 PGDFIALGSKGQANESKTAST-------LLKPAPSGLPSERKR---DAAAALSSASALT- 72
P D++ L + S TAS L+ PAPS LP R+ + A S +LT
Sbjct: 934 PVDYMDLPFSSSPSRSATASPQFSSHSKLITPAPSSLPHSRRALSPEMHAVTSEWISLTV 993
Query: 73 GLTKRPKLSSTPPLSALGRLAEAAV--AEKRAISP 105
G+ R L+ TPPL L EA++ + A+SP
Sbjct: 994 GVPGRRSLALTPPLPP---LPEASIYNTDHLALSP 1025
>gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens]
Length = 920
Score = 32.7 bits (73), Expect = 4.0
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 911 CEFLLHDAVDDAAS-GEEDDEGESKEQKAKKRQRQQK 946
CE L D+ D+ S GE + SK QK KKR+++QK
Sbjct: 559 CESLTSDSAKDSDSAGEAGAQASSKHQKRKKRRKRQK 595
>gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens]
Length = 901
Score = 32.7 bits (73), Expect = 4.0
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 911 CEFLLHDAVDDAAS-GEEDDEGESKEQKAKKRQRQQK 946
CE L D+ D+ S GE + SK QK KKR+++QK
Sbjct: 540 CESLTSDSAKDSDSAGEAGAQASSKHQKRKKRRKRQK 576
>gi|193083185 synaptopodin 2 isoform b [Homo sapiens]
Length = 1093
Score = 32.7 bits (73), Expect = 4.0
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 32/113 (28%)
Query: 1 MNRAKPTTVRRPSAAAKPSGHPPPGDFIALGSKGQANESKTASTLLKPAPSGLPSERKRD 60
+N A PT V+ S + P+ PP F S A+ P P G+P+ K++
Sbjct: 1011 VNAASPTNVQASSVYSVPAYTSPPSFFAEASSPVSAS----------PVPVGIPTSPKQE 1060
Query: 61 AAAALSSASALTGLTKRPKLSSTPPLSALGRLAEAAVAEKRAISPSIKEPSVV 113
SAS+ + RPK S A+K ++ + +PSVV
Sbjct: 1061 ------SASSSYFVAPRPKFS----------------AKKSGVTIQVWKPSVV 1091
>gi|33519444 amiloride-sensitive cation channel 4 isoform 2 [Homo
sapiens]
Length = 647
Score = 32.3 bits (72), Expect = 5.2
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 916 HDAVDDAASGEEDDEGESKEQKAKKRQRQQKQRQLLG 952
H D A ++ E+ E++ K++QRQQ+QRQ G
Sbjct: 28 HAGADSCAGADKGSHKETIEERDKRQQRQQRQRQHQG 64
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,436,891
Number of Sequences: 37866
Number of extensions: 3974069
Number of successful extensions: 15823
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 15712
Number of HSP's gapped (non-prelim): 137
length of query: 2190
length of database: 18,247,518
effective HSP length: 118
effective length of query: 2072
effective length of database: 13,779,330
effective search space: 28550771760
effective search space used: 28550771760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 70 (31.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.