Guide to the Human Genome
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Name: INTS1 Sequence: fasta or formatted (2190aa) NCBI GI: 160948599
Description:

integrator complex subunit 1

Referenced in:

Polyadenylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3        181           4
 C cysteine            1.8         39           3
 D aspartate           5.1        111           2
 E glutamate           7.1        156           3
 F phenylalanine       3.1         67           2
 G glycine             4.7        102           2
 H histidine           2.6         56           2
 I isoleucine          3.7         81           2
 K lysine              3.7         81           2
 L leucine            15.4        337           4
 M methionine          2.5         55           2
 N asparagine          2.3         51           2
 P proline             6.0        131           3
 Q glutamine           5.7        125           2
 R arginine            6.5        142           3
 S serine              8.6        188           3
 T threonine           4.1         89           2
 V valine              6.3        137           4
 W tryptophan          1.1         25           2
 Y tyrosine            1.6         36           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   integrator complex subunit 1 
TAF1                  0.003   TBP-associated factor 1 isoform 2 
TAF1                  0.003   TBP-associated factor 1 isoform 1 
GCC2                  0.003   GRIP and coiled-coil domain-containing 2 
CNOT3                 0.003   CCR4-NOT transcription complex, subunit 3 
TAF4                  0.003   TBP-associated factor 4 
NES                   0.002   nestin 
SPTBN5                0.002   spectrin, beta, non-erythrocytic 5 
OLIG2                 0.002   oligodendrocyte lineage transcription factor 2 [Homo...
POU2F1                0.002   POU class 2 homeobox 1 
LOC100292589          0.002   PREDICTED: hypothetical protein 
LOC100290121          0.002   PREDICTED: hypothetical protein XP_002346879 
LOC100289406          0.002   PREDICTED: hypothetical protein XP_002342721 
RYR1                  0.002   skeletal muscle ryanodine receptor isoform 2 
RYR1                  0.002   skeletal muscle ryanodine receptor isoform 1 
REEP1                 0.002   receptor accessory protein 1 
PCNT                  0.002   pericentrin 
ZNF469                0.002   zinc finger protein 469 
CHD3                  0.002   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.002   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.002   chromodomain helicase DNA binding protein 3 isoform...
TMPRSS13              0.002   transmembrane protease, serine 13 
ABCF1                 0.002   ATP-binding cassette, sub-family F, member 1 isoform...
ABCF1                 0.002   ATP-binding cassette, sub-family F, member 1 isoform...
NKX6-1                0.002   NK6 transcription factor related, locus 1 
SORBS1                0.002   sorbin and SH3 domain containing 1 isoform 3 
NPAS3                 0.002   neuronal PAS domain protein 3 isoform 2 
NPAS3                 0.002   neuronal PAS domain protein 3 isoform 1 
SYNPO2                0.002   synaptopodin 2 isoform b 
ACCN4                 0.002   amiloride-sensitive cation channel 4 isoform 2 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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