Guide to the Human Genome
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Name: LOC100286981 Sequence: fasta or formatted (291aa) NCBI GI: 239746287
Description:

PREDICTED: hypothetical protein XP_002343724

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.0         35           3
 C cysteine            1.4          4           1
 D aspartate           0.7          2           1
 E glutamate           4.1         12           1
 F phenylalanine       0.7          2           1
 G glycine            13.7         40           3
 H histidine           3.4         10           1
 I isoleucine          1.7          5           2
 K lysine              2.1          6           1
 L leucine             7.6         22           2
 M methionine          0.3          1           1
 N asparagine          0.7          2           1
 P proline            10.0         29           2
 Q glutamine           6.5         19           2
 R arginine            6.9         20           2
 S serine              9.3         27           3
 T threonine           6.5         19           2
 V valine              9.3         27           2
 W tryptophan          2.7          8           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343724 
LOC100289756          1.000   PREDICTED: hypothetical protein XP_002348004 
LOC100293892          0.617   PREDICTED: hypothetical protein 
LOC100293923          0.115   PREDICTED: hypothetical protein 
SF1                   0.023   splicing factor 1 isoform 3 
SF1                   0.023   splicing factor 1 isoform 2 
SF1                   0.023   splicing factor 1 isoform 1 
SFPQ                  0.019   splicing factor proline/glutamine rich (polypyrimidin...
DACT3                 0.019   thymus expressed gene 3-like 
TIGD5                 0.019   tigger transposable element derived 5 
RFX5                  0.017   regulatory factor X, 5 
RFX5                  0.017   regulatory factor X, 5 
EIF3F                 0.017   eukaryotic translation initiation factor 3, subunit 5...
EBF4                  0.017   early B-cell factor 4 
NFATC4                0.016   nuclear factor of activated T-cells, cytoplasmic, c...
CAMK2B                0.016   calcium/calmodulin-dependent protein kinase II beta ...
CDKN1C                0.016   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.016   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.016   cyclin-dependent kinase inhibitor 1C isoform a 
BSN                   0.016   bassoon protein 
LOC727804             0.014   PREDICTED: hypothetical protein 
COL10A1               0.014   type X collagen alpha 1 precursor 
ENAH                  0.014   enabled homolog isoform a 
ENAH                  0.014   enabled homolog isoform b 
LOC100292088          0.014   PREDICTED: hypothetical protein XP_002346321 
EVX2                  0.014   even-skipped homeobox 2 
ZNF598                0.014   zinc finger protein 598 
HCN3                  0.014   hyperpolarization activated cyclic nucleotide-gated ...
COL1A1                0.014   alpha 1 type I collagen preproprotein 
LOC100291548          0.014   PREDICTED: hypothetical protein XP_002348244 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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