TRIM56 25294

Name: TRIM56	Sequence: fasta or formatted (755aa)		NCBI GI: 30794216
Description: tripartite motif-containing 56		Referenced in: Tripartite Motif Family
Composition: Amino acid Percentage Count Longest homopolymer A alanine 10.3 78 4 C cysteine 4.0 30 1 D aspartate 4.4 33 2 E glutamate 7.4 56 2 F phenylalanine 2.5 19 2 G glycine 9.8 74 2 H histidine 2.5 19 1 I isoleucine 1.9 14 1 K lysine 3.8 29 4 L leucine 11.5 87 2 M methionine 0.5 4 1 N asparagine 2.0 15 2 P proline 7.0 53 2 Q glutamine 5.6 42 2 R arginine 8.5 64 2 S serine 5.7 43 2 T threonine 3.8 29 2 V valine 6.8 51 2 W tryptophan 0.5 4 1 Y tyrosine 1.5 11 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 tripartite motif-containing 56 TRIM45 0.064 tripartite motif-containing 45 isoform 2 TRIM45 0.064 tripartite motif-containing 45 isoform 1 TRIM3 0.060 tripartite motif-containing 3 TRIM3 0.060 tripartite motif-containing 3 TRIM28 0.051 tripartite motif-containing 28 protein TRIM33 0.048 tripartite motif-containing 33 protein isoform beta ... TRIM33 0.048 tripartite motif-containing 33 protein isoform alpha... TRIM47 0.046 tripartite motif-containing 47 TRIM2 0.046 tripartite motif-containing 2 isoform 2 TRIM2 0.046 tripartite motif-containing 2 isoform 1 PML 0.042 promyelocytic leukemia protein isoform 11 PML 0.042 promyelocytic leukemia protein isoform 2 PML 0.042 promyelocytic leukemia protein isoform 9 PML 0.042 promyelocytic leukemia protein isoform 8 PML 0.042 promyelocytic leukemia protein isoform 6 PML 0.042 promyelocytic leukemia protein isoform 7 PML 0.042 promyelocytic leukemia protein isoform 10 PML 0.042 promyelocytic leukemia protein isoform 1 PML 0.042 promyelocytic leukemia protein isoform 5 TRIM24 0.038 transcriptional intermediary factor 1 alpha isoform ... TRIM24 0.038 transcriptional intermediary factor 1 alpha isoform ... RNF207 0.033 ring finger protein 207 MID1 0.032 midline 1 MID1 0.032 midline 1 MID1 0.032 midline 1 TRIM8 0.030 tripartite motif-containing 8 TRIM23 0.028 ADP-ribosylation factor domain protein 1 isoform gam... TRIM23 0.028 ADP-ribosylation factor domain protein 1 isoform bet... TRIM23 0.028 ADP-ribosylation factor domain protein 1 isoform alph... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.