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Search of human proteins with 157388981
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|157388981 hypothetical protein LOC55286 [Homo sapiens]
(314 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|157388979 hypothetical protein LOC55286 [Homo sapiens] 665 0.0
gi|157388981 hypothetical protein LOC55286 [Homo sapiens] 665 0.0
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 39 0.005
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s... 35 0.11
gi|30387611 cell division cycle 2-like 6 (CDK8-like) [Homo sapiens] 33 0.33
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 33 0.33
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 33 0.43
gi|151301053 RNA binding motif protein 33 [Homo sapiens] 32 0.56
gi|35038528 PAS domain containing serine/threonine kinase [Homo ... 32 0.56
gi|46560555 transmembrane protein 132E [Homo sapiens] 32 0.56
gi|26667203 calcium/calmodulin-dependent protein kinase II gamma... 32 0.96
gi|172072684 PR domain containing 1, with ZNF domain isoform 1 [... 31 1.2
gi|33946274 PR domain containing 1, with ZNF domain isoform 2 [H... 31 1.2
gi|223972612 Crm, cramped-like [Homo sapiens] 31 1.6
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 31 1.6
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens] 31 1.6
gi|33667044 ABI gene family, member 3 (NESH) binding protein [Ho... 31 1.6
gi|150417986 ADP-ribosylation factor guanine nucleotide-exchange... 31 1.6
gi|122937229 zinc finger protein 629 [Homo sapiens] 31 1.6
gi|32479521 dishevelled 1 [Homo sapiens] 30 2.1
gi|21361458 Rho guanine nucleotide exchange factor (GEF) 17 [Hom... 30 2.1
gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens] 30 2.1
gi|112421108 capicua homolog [Homo sapiens] 30 2.1
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens] 30 2.8
gi|116089335 BR serine/threonine kinase 2 [Homo sapiens] 30 2.8
gi|193082982 zinc finger protein 837 isoform 1 [Homo sapiens] 30 2.8
gi|193082980 zinc finger protein 837 isoform 2 [Homo sapiens] 30 2.8
gi|114155142 nuclear pore complex-associated protein TPR [Homo s... 30 2.8
gi|192449449 ubiquitin-conjugating enzyme E2O [Homo sapiens] 30 2.8
gi|31881675 synaptotagmin XV isoform a [Homo sapiens] 30 2.8
>gi|157388979 hypothetical protein LOC55286 [Homo sapiens]
Length = 314
Score = 665 bits (1715), Expect = 0.0
Identities = 314/314 (100%), Positives = 314/314 (100%)
Query: 1 MGCRCCKIIQSYLFDPVQVPSPGYVNEVNSCKLDEDDTDKLKGKWSSEVLVQKNDPQRQG 60
MGCRCCKIIQSYLFDPVQVPSPGYVNEVNSCKLDEDDTDKLKGKWSSEVLVQKNDPQRQG
Sbjct: 1 MGCRCCKIIQSYLFDPVQVPSPGYVNEVNSCKLDEDDTDKLKGKWSSEVLVQKNDPQRQG 60
Query: 61 SKKTESSSRTADPWEPCWPHQGPLPQGDAGGEHHACGVNGIGPAATPQPTGNSSPTQDDR 120
SKKTESSSRTADPWEPCWPHQGPLPQGDAGGEHHACGVNGIGPAATPQPTGNSSPTQDDR
Sbjct: 61 SKKTESSSRTADPWEPCWPHQGPLPQGDAGGEHHACGVNGIGPAATPQPTGNSSPTQDDR 120
Query: 121 GSWASTANTVPPTQPFLEGGGTRKQDCVLLASEGTQVMRNGDSRAPSEAESFALEVQDHV 180
GSWASTANTVPPTQPFLEGGGTRKQDCVLLASEGTQVMRNGDSRAPSEAESFALEVQDHV
Sbjct: 121 GSWASTANTVPPTQPFLEGGGTRKQDCVLLASEGTQVMRNGDSRAPSEAESFALEVQDHV 180
Query: 181 FQIPAPDYLQHWGPAGDNVDHNEKDCVFKNHTEDESLEGIQPPVGEHGLNTPFSVRRSWD 240
FQIPAPDYLQHWGPAGDNVDHNEKDCVFKNHTEDESLEGIQPPVGEHGLNTPFSVRRSWD
Sbjct: 181 FQIPAPDYLQHWGPAGDNVDHNEKDCVFKNHTEDESLEGIQPPVGEHGLNTPFSVRRSWD 240
Query: 241 SLNEDVETEVLSICFNEKGPVHAMPVVDSGNRQEDTHGSDGDGDGEIVDEDAAVAEALAA 300
SLNEDVETEVLSICFNEKGPVHAMPVVDSGNRQEDTHGSDGDGDGEIVDEDAAVAEALAA
Sbjct: 241 SLNEDVETEVLSICFNEKGPVHAMPVVDSGNRQEDTHGSDGDGDGEIVDEDAAVAEALAA 300
Query: 301 LEAATAGEDLDETD 314
LEAATAGEDLDETD
Sbjct: 301 LEAATAGEDLDETD 314
>gi|157388981 hypothetical protein LOC55286 [Homo sapiens]
Length = 314
Score = 665 bits (1715), Expect = 0.0
Identities = 314/314 (100%), Positives = 314/314 (100%)
Query: 1 MGCRCCKIIQSYLFDPVQVPSPGYVNEVNSCKLDEDDTDKLKGKWSSEVLVQKNDPQRQG 60
MGCRCCKIIQSYLFDPVQVPSPGYVNEVNSCKLDEDDTDKLKGKWSSEVLVQKNDPQRQG
Sbjct: 1 MGCRCCKIIQSYLFDPVQVPSPGYVNEVNSCKLDEDDTDKLKGKWSSEVLVQKNDPQRQG 60
Query: 61 SKKTESSSRTADPWEPCWPHQGPLPQGDAGGEHHACGVNGIGPAATPQPTGNSSPTQDDR 120
SKKTESSSRTADPWEPCWPHQGPLPQGDAGGEHHACGVNGIGPAATPQPTGNSSPTQDDR
Sbjct: 61 SKKTESSSRTADPWEPCWPHQGPLPQGDAGGEHHACGVNGIGPAATPQPTGNSSPTQDDR 120
Query: 121 GSWASTANTVPPTQPFLEGGGTRKQDCVLLASEGTQVMRNGDSRAPSEAESFALEVQDHV 180
GSWASTANTVPPTQPFLEGGGTRKQDCVLLASEGTQVMRNGDSRAPSEAESFALEVQDHV
Sbjct: 121 GSWASTANTVPPTQPFLEGGGTRKQDCVLLASEGTQVMRNGDSRAPSEAESFALEVQDHV 180
Query: 181 FQIPAPDYLQHWGPAGDNVDHNEKDCVFKNHTEDESLEGIQPPVGEHGLNTPFSVRRSWD 240
FQIPAPDYLQHWGPAGDNVDHNEKDCVFKNHTEDESLEGIQPPVGEHGLNTPFSVRRSWD
Sbjct: 181 FQIPAPDYLQHWGPAGDNVDHNEKDCVFKNHTEDESLEGIQPPVGEHGLNTPFSVRRSWD 240
Query: 241 SLNEDVETEVLSICFNEKGPVHAMPVVDSGNRQEDTHGSDGDGDGEIVDEDAAVAEALAA 300
SLNEDVETEVLSICFNEKGPVHAMPVVDSGNRQEDTHGSDGDGDGEIVDEDAAVAEALAA
Sbjct: 241 SLNEDVETEVLSICFNEKGPVHAMPVVDSGNRQEDTHGSDGDGDGEIVDEDAAVAEALAA 300
Query: 301 LEAATAGEDLDETD 314
LEAATAGEDLDETD
Sbjct: 301 LEAATAGEDLDETD 314
>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 39.3 bits (90), Expect = 0.005
Identities = 38/138 (27%), Positives = 53/138 (38%), Gaps = 24/138 (17%)
Query: 20 PSPGYVNEVNSCKLDEDDTDKLKGKWSSEVLVQKNDPQRQGSKKTESSSRTADPWEPCWP 79
PSP +C + + DK +G+ + + Q P + GSK S+ P P
Sbjct: 272 PSPA------NCTTENSEDDKKRGRSTDSEVSQS--PAKNGSKPVHSNQHPQSPAVPPTY 323
Query: 80 HQGPLPQ--------GDAGGEHHACGVNGIGPAATPQPTGNS-------SPTQDDRGSWA 124
GP P G+ G A + +GP A+P P+ NS S
Sbjct: 324 PSGPPPAASALSTTPGNNGVPAPAAPPSALGPKASPAPSHNSGTPAPYAQAVAPPAPSGP 383
Query: 125 STANTVPPT-QPFLEGGG 141
ST PP+ QP GGG
Sbjct: 384 STTQPRPPSVQPSGGGGG 401
>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
sapiens]
Length = 4911
Score = 34.7 bits (78), Expect = 0.11
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 16 PVQVPSPGYVNEVNSCKLDEDDTDKLKGKWSSEVLVQKNDPQRQGSKKTESSSRTADPWE 75
P VP+ G + N+ + + DT+KL+ + ++ + Q++ + + E S+ +
Sbjct: 2356 PGPVPTSGVTDTQNTVNMAQADTEKLRQRQKLREIILQQQQQKKIAGRQEKGSQDS---- 2411
Query: 76 PCWPHQGPL 84
P PH GPL
Sbjct: 2412 PAVPHPGPL 2420
>gi|30387611 cell division cycle 2-like 6 (CDK8-like) [Homo sapiens]
Length = 502
Score = 33.1 bits (74), Expect = 0.33
Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 12/97 (12%)
Query: 51 VQKNDPQRQGSKKTESSSR-----TADPWEPCWPHQGPLPQ-------GDAGGEHHACGV 98
+ ++DP+ +G K + TA P + P Q P PQ G AGG G
Sbjct: 359 LNEDDPEEKGDKNQQQQQNQHQQPTAPPQQAAAPPQAPPPQQNSTQTNGTAGGAGAGVGG 418
Query: 99 NGIGPAATPQPTGNSSPTQDDRGSWASTANTVPPTQP 135
G G + + N P S AN+ P P
Sbjct: 419 TGAGLQHSQDSSLNQVPPNKKPRLGPSGANSGGPVMP 455
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 33.1 bits (74), Expect = 0.33
Identities = 28/97 (28%), Positives = 36/97 (37%), Gaps = 13/97 (13%)
Query: 56 PQRQGSKKTESSSRTADPWEPCWPHQGPLPQGDAGGEHHACGVNG-------IGPAATPQ 108
P+ Q + R P P P P PQG +G + H G G IGP P
Sbjct: 666 PRPQDMHGPQGMQRHPGPHGPLGPQGPPGPQGSSGPQGH-MGPQGPPGPQGHIGPQGPPG 724
Query: 109 PTGNSSP-----TQDDRGSWASTANTVPPTQPFLEGG 140
P G+ P TQ +G PP ++GG
Sbjct: 725 PQGHLGPQGPPGTQGMQGPPGPRGMQGPPHPHGIQGG 761
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 32.7 bits (73), Expect = 0.43
Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 5/106 (4%)
Query: 34 DEDDTDKLKGKWSSEVLVQKNDPQRQGSKKTESSSRTADPWEPCWPHQGPLPQGDAGGEH 93
+EDD + S+ Q G + +S+ W PC PHQG Q + G
Sbjct: 340 EEDDVSEGSEVPESDRPAGAQHHQLNGERGPQSAKERVKEWTPCGPHQG---QDEGRGPA 396
Query: 94 HACGVNGIGPAATPQPTGNSSPTQDDRGSWASTANTVPPTQPFLEG 139
G + A G ++ G + + +PP +P L G
Sbjct: 397 PGSGTRQVFSMAAMNKEGGTASVA--TGPDSPSPVPLPPGKPALPG 440
>gi|151301053 RNA binding motif protein 33 [Homo sapiens]
Length = 1170
Score = 32.3 bits (72), Expect = 0.56
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 79 PHQGPLPQGDAGGEHHACGVNGIGPAATP-----QPTGNSSPTQDDRGSWASTANTVPPT 133
P Q PLP G + G + P P QP G + A+T +PP
Sbjct: 499 PTQSPLPFTQPGPAFNQQGQQPVFPRERPVRPALQPPGPVGILHFSQPGSATTRPFIPPR 558
Query: 134 QPFLEGGG 141
QPFL G G
Sbjct: 559 QPFLPGPG 566
>gi|35038528 PAS domain containing serine/threonine kinase [Homo
sapiens]
Length = 1323
Score = 32.3 bits (72), Expect = 0.56
Identities = 45/158 (28%), Positives = 60/158 (37%), Gaps = 19/158 (12%)
Query: 65 ESSSRTAD--PWEPCWPHQGPLPQGDAGGEHHACGVNGIGPAATPQPTGNSSPTQDDRGS 122
ES S D P+ C + P+P D G + G+ G+ A + G S P+ D
Sbjct: 532 ESRSEPVDVKPFASCEDSEAPVPAEDGGSD---AGMCGLCQKAQLERMGVSGPSGSD--L 586
Query: 123 WASTANTVPPTQPFLEGGGTRKQDCVLLASEGTQVMRNGDSRAPSEAESFALEVQDHVFQ 182
WA A P + L GG+ C SE R+ D APS + L F
Sbjct: 587 WAGAAVAKPQAKGQL-AGGSLLMHCPCYGSEWGLWWRSQD-LAPSPSGMAGLS-----FG 639
Query: 183 IPAPDYLQHWGPAGDNVDHNE-KDCVFKNHTEDESLEG 219
P D + W G D E + C+ K SL G
Sbjct: 640 TPTLD--EPW--LGVENDREELQTCLIKEQLSQLSLAG 673
>gi|46560555 transmembrane protein 132E [Homo sapiens]
Length = 984
Score = 32.3 bits (72), Expect = 0.56
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 10/66 (15%)
Query: 72 DPWEPCWPHQGPLPQGDAGGEHHACGVNGIGPAATPQPTGNSSPTQDDRGSWASTANTVP 131
D +P + + GP G GGE A G P G++ P + G + + VP
Sbjct: 726 DEEDPTYDYPGPSQPGPGGGEDEARGAG---------PPGSALPAPEAPGP-GTASPVVP 775
Query: 132 PTQPFL 137
PT+ FL
Sbjct: 776 PTEDFL 781
>gi|26667203 calcium/calmodulin-dependent protein kinase II gamma
isoform 1 [Homo sapiens]
Length = 556
Score = 31.6 bits (70), Expect = 0.96
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 105 ATPQPTGNSSPTQDDRGSWASTANTVP-PTQPFLEGGGTRKQDCVLLASEGTQVMRNGDS 163
A P TGN S + R S TA + QP L RKQ+ + + + + + NGD
Sbjct: 385 AAPLRTGNGSSVPEGRSSRDRTAPSAGMQPQPSLCSSAMRKQEIIKITEQLIEAINNGDF 444
Query: 164 RA 165
A
Sbjct: 445 EA 446
>gi|172072684 PR domain containing 1, with ZNF domain isoform 1
[Homo sapiens]
Length = 825
Score = 31.2 bits (69), Expect = 1.2
Identities = 49/169 (28%), Positives = 67/169 (39%), Gaps = 32/169 (18%)
Query: 16 PVQVPSPGY-VNEVNSCKLDEDDTDKLKGKWSSEVLVQKNDPQRQGSKKTESSSRTADPW 74
P VP Y V E+ KLD + + KGK L + N K + R P
Sbjct: 240 PKNVPKREYSVKEI--LKLDSNPS---KGK----DLYRSNISPLTSEKDLDDFRRRGSPE 290
Query: 75 EPCWPH-----QGPLPQGDAGGEHHACGV--------NGIGPAATPQPTGNSSPTQDDRG 121
P +P + PLP+ D A G+ + I + TP P+ SSP Q +
Sbjct: 291 MPFYPRVVYPIRAPLPE-DFLKASLAYGIERPTYITRSPIPSSTTPSPSARSSPDQSLKS 349
Query: 122 S--WASTANTVPPTQPFLEGGGTRKQD--CVLLASEGTQVMRNGDSRAP 166
S +S NTV P P G +D L AS GT+ + + AP
Sbjct: 350 SSPHSSPGNTVSPVGP----GSQEHRDSYAYLNASYGTEGLGSYPGYAP 394
>gi|33946274 PR domain containing 1, with ZNF domain isoform 2 [Homo
sapiens]
Length = 691
Score = 31.2 bits (69), Expect = 1.2
Identities = 49/169 (28%), Positives = 67/169 (39%), Gaps = 32/169 (18%)
Query: 16 PVQVPSPGY-VNEVNSCKLDEDDTDKLKGKWSSEVLVQKNDPQRQGSKKTESSSRTADPW 74
P VP Y V E+ KLD + + KGK L + N K + R P
Sbjct: 106 PKNVPKREYSVKEI--LKLDSNPS---KGK----DLYRSNISPLTSEKDLDDFRRRGSPE 156
Query: 75 EPCWPH-----QGPLPQGDAGGEHHACGV--------NGIGPAATPQPTGNSSPTQDDRG 121
P +P + PLP+ D A G+ + I + TP P+ SSP Q +
Sbjct: 157 MPFYPRVVYPIRAPLPE-DFLKASLAYGIERPTYITRSPIPSSTTPSPSARSSPDQSLKS 215
Query: 122 S--WASTANTVPPTQPFLEGGGTRKQD--CVLLASEGTQVMRNGDSRAP 166
S +S NTV P P G +D L AS GT+ + + AP
Sbjct: 216 SSPHSSPGNTVSPVGP----GSQEHRDSYAYLNASYGTEGLGSYPGYAP 260
>gi|223972612 Crm, cramped-like [Homo sapiens]
Length = 1269
Score = 30.8 bits (68), Expect = 1.6
Identities = 32/158 (20%), Positives = 55/158 (34%), Gaps = 15/158 (9%)
Query: 37 DTDKLKGKWSSEVLVQKNDPQRQGSKKTESSSRTADPWEPCWPHQGPLPQGDAGGEHHAC 96
D + L+G+ + + + +KT + P P P PQG +HH
Sbjct: 24 DEESLEGEGAGGADAAEESSGTKRDEKTPRAGADGPPAPPGAPQAPSPPQGSPQDQHHFL 83
Query: 97 GVNGIGPAATPQP----------TGNSSPTQDDRGSWASTANTVPPTQPFLEGGGTRKQD 146
+ + P+ G S P S++ V P GG+R
Sbjct: 84 RSSVRPQSKRPRKDPPSAVGSGNAGGSGPRGKGAEGGGSSSGNVSGVAPAAPAGGSRSSS 143
Query: 147 CVLLAS-----EGTQVMRNGDSRAPSEAESFALEVQDH 179
L +S EG +V R +S + + +F + +H
Sbjct: 144 RNLGSSGGEKEEGKKVRRQWESWSTEDKNTFFEGLYEH 181
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 30.8 bits (68), Expect = 1.6
Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 16/59 (27%)
Query: 79 PH-QGPLPQGDAGGEHHACGVNGIGPAATPQPTGNSSPTQDDRGSWASTANTVPPTQPF 136
PH GP P H + PA P PT + PT D RG PPT P+
Sbjct: 341 PHLPGPPPGAPPPAPH-------VNPAFFPPPTNSGMPTSDSRGP--------PPTDPY 384
>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
Length = 3664
Score = 30.8 bits (68), Expect = 1.6
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 103 PAATPQPTGNSSPTQDDRGSWASTANTVPPTQPFLEGGGTRKQDCVLLASEGTQVMRNGD 162
P P P+ + T++ RG+ + T+++VP E G+++ + L+ + +
Sbjct: 2285 PVNAPDPSAGPTDTKEARGNSSETSHSVP------EAKGSKEVEVTLVRKDKGRQKTTRS 2338
Query: 163 SRAPSEAESFALEVQDHVFQIPAPDYLQHWGPA---GDNVDHNE 203
R + + V+ HV P + Q PA G V H E
Sbjct: 2339 RRKRNTNKKVVAPVESHV---PESNQAQGESPAANEGTTVQHPE 2379
>gi|33667044 ABI gene family, member 3 (NESH) binding protein [Homo
sapiens]
Length = 1075
Score = 30.8 bits (68), Expect = 1.6
Identities = 16/54 (29%), Positives = 22/54 (40%)
Query: 63 KTESSSRTADPWEPCWPHQGPLPQGDAGGEHHACGVNGIGPAATPQPTGNSSPT 116
K + R P P P + PLP + G+ + G+ GP TP PT
Sbjct: 700 KKPGTRRPPLPPRPTHPRRKPLPPNNVTGKPGSAGIISSGPITTPPLRSTPRPT 753
>gi|150417986 ADP-ribosylation factor guanine nucleotide-exchange
factor 2 [Homo sapiens]
Length = 1785
Score = 30.8 bits (68), Expect = 1.6
Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 10/68 (14%)
Query: 144 KQDCVLLASEGTQVMRNGDSRAPSEAESFALEVQDH-------VFQIPAPDYLQHWGPAG 196
KQD LA GT + N S E F+ EV D +F+ P L W P G
Sbjct: 1437 KQDNEQLARSGTNCLEN---LVISNGEKFSPEVWDETCNCMLDIFKTTIPHVLLTWRPVG 1493
Query: 197 DNVDHNEK 204
D +EK
Sbjct: 1494 MEEDSSEK 1501
>gi|122937229 zinc finger protein 629 [Homo sapiens]
Length = 869
Score = 30.8 bits (68), Expect = 1.6
Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 6/113 (5%)
Query: 26 NEVNSCKLDEDDTDKLKGKWSSEVLVQKNDPQRQGSKKTESSSRTADPWEPCWPHQGPLP 85
N+ + E++ + + + S E ++ + Q SK + S +P P P P
Sbjct: 20 NDAHRGAESENEEESPRQESSGEEIIMGDPAQSPESKDSTEMSLERSSQDPSVPQNPPTP 79
Query: 86 QGDAGGEHHACGVNGIGPAATPQPTGNSSPTQDDRGSW---ASTANTVPPTQP 135
G + H ++ P P P S T+ SW A T PP P
Sbjct: 80 LGHSNPLDHQIPLDPPAPEVVPTP---SDWTKACEASWQWGALTTWNSPPVVP 129
>gi|32479521 dishevelled 1 [Homo sapiens]
Length = 670
Score = 30.4 bits (67), Expect = 2.1
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 57 QRQGSKKTES--SSRTADPWEPCWPHQGPLPQGDAGGEHHACGVNGIGPAATPQPTGNSS 114
Q +GSK + S SSR A E + G +G E +G+G + +P G S
Sbjct: 544 QSEGSKSSGSTRSSRRAPGREK---ERRAAGAGGSGSESDHTAPSGVGSSWRERPAGQLS 600
Query: 115 PTQDDRGSWASTANTVPPTQP 135
R ++TA +PP P
Sbjct: 601 RGSSPRSQASATAPGLPPPHP 621
>gi|21361458 Rho guanine nucleotide exchange factor (GEF) 17 [Homo
sapiens]
Length = 2063
Score = 30.4 bits (67), Expect = 2.1
Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 32/132 (24%)
Query: 57 QRQGSKKTESSSRTADPWEPCWPH---QGPLPQGDAGGEHHACGVNGIGPAATP------ 107
QR G+++ + S A P P W +G Q + G + GIG P
Sbjct: 603 QRMGAQQDDGSD--APPGSPDWAGDVTRGQRSQEELSGPESSLTDEGIGADPEPPVAAFC 660
Query: 108 --------QPTGNSSP--------TQDDRGSWASTANTVPPTQPFLEGGGTRKQDCVLLA 151
+P +SS T+D G WA + PPT G R++ V +
Sbjct: 661 GLGTTGMWRPLSSSSAQTNHHGPGTEDSLGGWALVSPETPPTP-----GALRRRRKVPPS 715
Query: 152 SEGTQVMRNGDS 163
G + NG++
Sbjct: 716 GSGGSELSNGEA 727
>gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens]
Length = 1729
Score = 30.4 bits (67), Expect = 2.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 103 PAATPQPTGNSSPTQDDRGSWASTA 127
P+ PQP G +S T+D G+W S+A
Sbjct: 1505 PSWRPQPDGEASQTEDVDGTWGSSA 1529
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 30.4 bits (67), Expect = 2.1
Identities = 24/72 (33%), Positives = 26/72 (36%), Gaps = 9/72 (12%)
Query: 69 RTADPWEPCWPHQGPLPQGDAGGEHHACGVNGIGPAATPQPTGNSSPTQDDRGSWASTAN 128
+ A P E + PLP G A PA TP P G PT S TA
Sbjct: 1520 QAATPTEQPPGAEAPLPVPPPTGTAAA-------PAPTPSPAGGPDPTSPSSDS--GTAQ 1570
Query: 129 TVPPTQPFLEGG 140
PP P E G
Sbjct: 1571 AAPPLPPPPESG 1582
>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 30.0 bits (66), Expect = 2.8
Identities = 40/155 (25%), Positives = 58/155 (37%), Gaps = 26/155 (16%)
Query: 58 RQGSKKTESSSRTADPWEPCWPHQGPLPQGDAGGEHHACGVNGIGPAATP--QPTGNSSP 115
R G + + +R+ P E P P P+ G+H P +P + T + SP
Sbjct: 164 RPGCRSSPFPARSRTPGEAGPPRGDPRPRAPRPGDH---------PRRSPALRETPSLSP 214
Query: 116 TQDDR--GSWASTANTVPPTQPFLEGGGTRKQDCVLL------ASEGTQVMRNGD---SR 164
R G A+ T P QP TR+++ + L +S GT V R D R
Sbjct: 215 PSPGRRNGKRAAGKGTTPQPQPPPPPCATRREEDMALRTRDRTSSRGT-VFRAADWGFGR 273
Query: 165 APSEAESFALEVQDHVFQIPAP---DYLQHWGPAG 196
+ L + + PA Q WGP G
Sbjct: 274 SEQHLRGLTLIISCTLSHKPASLRRSGTQAWGPRG 308
>gi|116089335 BR serine/threonine kinase 2 [Homo sapiens]
Length = 668
Score = 30.0 bits (66), Expect = 2.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 103 PAATPQPTGNSSPTQDDRGSWASTANTVPPTQPFLEG 139
P +P PT +P + S A T N PP+ P + G
Sbjct: 436 PRGSPLPTPKGTPVHTPKESPAGTPNPTPPSSPSVGG 472
>gi|193082982 zinc finger protein 837 isoform 1 [Homo sapiens]
Length = 531
Score = 30.0 bits (66), Expect = 2.8
Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
Query: 81 QGPLPQGDAGGEHHACGVNGIGPAATPQPTGNSSPTQDDRGSWASTANTVPPTQPFLEGG 140
QG LP+ DA G A P + S PTQ A+ T PP GG
Sbjct: 10 QGGLPKADAQGASGAREKRPEEPRPLEEDRAGSRPTQKGDLRGAAGGRTTPP------GG 63
Query: 141 GTRKQDCVLLASEGTQVMRNGDSR 164
G+R C L S G + +R
Sbjct: 64 GSR--GCSLGVSPGPGTRHSAGTR 85
>gi|193082980 zinc finger protein 837 isoform 2 [Homo sapiens]
Length = 531
Score = 30.0 bits (66), Expect = 2.8
Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
Query: 81 QGPLPQGDAGGEHHACGVNGIGPAATPQPTGNSSPTQDDRGSWASTANTVPPTQPFLEGG 140
QG LP+ DA G A P + S PTQ A+ T PP GG
Sbjct: 10 QGGLPKADAQGASGAREKRPEEPRPLEEDRAGSRPTQKGDLRGAAGGRTTPP------GG 63
Query: 141 GTRKQDCVLLASEGTQVMRNGDSR 164
G+R C L S G + +R
Sbjct: 64 GSR--GCSLGVSPGPGTRHSAGTR 85
>gi|114155142 nuclear pore complex-associated protein TPR [Homo
sapiens]
Length = 2363
Score = 30.0 bits (66), Expect = 2.8
Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 19/144 (13%)
Query: 164 RAPSEAESFALEVQDHV----FQIPAPDYLQHWGPAG--------DNVDHNEKDCVFKNH 211
R E E +E D V ++P P L+ P G ++ D + V+
Sbjct: 1830 RTREEEEDSTIEASDQVSDDTVEMPLPKKLKSVTPVGTEEEVMAEESTDGEVETQVYNQD 1889
Query: 212 TEDESLEGIQP----PVGEHGLNTPFSVRRSWDSLNEDVETEVLSICFNEKGPVHAMPVV 267
++D EG+ P+ E T S++ L D +T S KG + V+
Sbjct: 1890 SQDSIGEGVTQGDYTPM-EDSEETSQSLQIDLGPLQSDQQTTTSSQDGQGKGD--DVIVI 1946
Query: 268 DSGNRQEDTHGSDGDGDGEIVDED 291
DS + +ED +DG+ + DE+
Sbjct: 1947 DSDDEEEDDDENDGEHEDYEEDEE 1970
>gi|192449449 ubiquitin-conjugating enzyme E2O [Homo sapiens]
Length = 1292
Score = 30.0 bits (66), Expect = 2.8
Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 15/109 (13%)
Query: 55 DPQRQGSKKTESSSRTADPWEPCWPHQGPLPQGDAGGEHHACGVNGIGP----------- 103
DP ++G KT+S + +A P E P+ D G E + P
Sbjct: 414 DPDKKGESKTKSEAESASPEETPDGSASPVEMQDEGAEEPHEAGEQLPPFLLKEGRDDRL 473
Query: 104 -AATPQPTGNSSPTQDDRGSWASTANTVPPTQPFLEGGGTRKQDCVLLA 151
+A ++ DD S S+A++ +Q G GT ++ + L+
Sbjct: 474 HSAEQDADDEAADDTDDTSSVTSSASSTTSSQ---SGSGTSRKKSIPLS 519
>gi|31881675 synaptotagmin XV isoform a [Homo sapiens]
Length = 421
Score = 30.0 bits (66), Expect = 2.8
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 73 PWEPCWPHQGPLPQGDAGGEHHACGVNGIGPAATPQPTGNS 113
PW+PC P LP +GG AC V I P P S
Sbjct: 100 PWDPC-PASELLPHTSSGGLGDACMVGAINPELYKFPEDKS 139
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.131 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,979,158
Number of Sequences: 37866
Number of extensions: 817809
Number of successful extensions: 2406
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 2370
Number of HSP's gapped (non-prelim): 92
length of query: 314
length of database: 18,247,518
effective HSP length: 102
effective length of query: 212
effective length of database: 14,385,186
effective search space: 3049659432
effective search space used: 3049659432
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.