Guide to the Human Genome
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Name: C4orf19 Sequence: fasta or formatted (314aa) NCBI GI: 157388981
Description:

hypothetical protein LOC55286

Not currently referenced in the text

Other entries for this name:
alt mRNA {314aa} hypothetical protein LOC55286
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         23           2
 C cysteine            2.9          9           2
 D aspartate           9.6         30           2
 E glutamate           8.6         27           1
 F phenylalanine       2.2          7           1
 G glycine             9.6         30           3
 H histidine           3.2         10           2
 I isoleucine          2.2          7           2
 K lysine              3.8         12           2
 L leucine             5.4         17           2
 M methionine          1.0          3           1
 N asparagine          4.5         14           1
 P proline             8.0         25           2
 Q glutamine           5.4         17           1
 R arginine            3.2         10           2
 S serine              7.6         24           3
 T threonine           5.4         17           1
 V valine              7.3         23           2
 W tryptophan          1.9          6           1
 Y tyrosine            1.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC55286 
C4orf19               1.000   hypothetical protein LOC55286 
CNOT3                 0.022   CCR4-NOT transcription complex, subunit 3 
MLL3                  0.016   myeloid/lymphoid or mixed-lineage leukemia 3 
CDC2L6                0.013   cell division cycle 2-like 6 (CDK8-like) 
WDR33                 0.013   WD repeat domain 33 isoform 1 
SAMD1                 0.013   sterile alpha motif domain containing 1 
RBM33                 0.011   RNA binding motif protein 33 
PASK                  0.011   PAS domain containing serine/threonine kinase 
TMEM132E              0.011   transmembrane protein 132E 
CAMK2G                0.011   calcium/calmodulin-dependent protein kinase II gamma...
PRDM1                 0.009   PR domain containing 1, with ZNF domain isoform 1 [...
PRDM1                 0.009   PR domain containing 1, with ZNF domain isoform 2 [H...
CRAMP1L               0.009   Crm, cramped-like 
CPSF6                 0.009   cleavage and polyadenylation specific factor 6, 68 ...
SPEN                  0.009   spen homolog, transcriptional regulator 
ABI3BP                0.009   ABI gene family, member 3 (NESH) binding protein [Ho...
ARFGEF2               0.009   ADP-ribosylation factor guanine nucleotide-exchange...
ZNF629                0.009   zinc finger protein 629 
DVL1                  0.008   dishevelled 1 
ARHGEF17              0.008   Rho guanine nucleotide exchange factor (GEF) 17 [Hom...
TNKS1BP1              0.008   tankyrase 1-binding protein 1 
CIC                   0.008   capicua homolog 
LOC100130360          0.008   PREDICTED: hypothetical protein 
BRSK2                 0.008   BR serine/threonine kinase 2 
ZNF837                0.008   zinc finger protein 837 isoform 1 
ZNF837                0.008   zinc finger protein 837 isoform 2 
TPR                   0.008   nuclear pore complex-associated protein TPR 
UBE2O                 0.008   ubiquitin-conjugating enzyme E2O 
SYT15                 0.008   synaptotagmin XV isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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