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Search of human proteins with 110349727
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|110349727 nuclear cap binding protein subunit 2, 20kDa
isoform 2 [Homo sapiens]
(103 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|110349727 nuclear cap binding protein subunit 2, 20kDa isofor... 214 1e-56
gi|19923387 nuclear cap binding protein subunit 2, 20kDa isoform... 183 2e-47
gi|239757879 PREDICTED: similar to Nuclear cap-binding protein s... 104 1e-23
gi|5803137 RNA binding motif protein 3 [Homo sapiens] 34 0.022
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 31 0.24
gi|22094125 zinc finger protein 28 [Homo sapiens] 30 0.31
gi|14702180 eukaryotic translation initiation factor 4H isoform ... 30 0.41
gi|15826852 acyl-Coenzyme A binding domain containing 3 [Homo sa... 30 0.41
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens] 30 0.53
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens] 30 0.53
gi|109452587 family with sequence similarity 98, member B isofor... 30 0.53
gi|4502847 cold inducible RNA binding protein [Homo sapiens] 28 1.2
gi|4758138 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Homo sapiens] 28 2.0
gi|103471997 DNA-directed RNA polymerase I A [Homo sapiens] 27 2.6
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens] 27 4.5
gi|4505101 microtubule-associated protein 7 [Homo sapiens] 27 4.5
gi|9558733 transformer-2 alpha [Homo sapiens] 26 5.9
gi|169161779 PREDICTED: similar to nucleophosmin 1 [Homo sapiens] 26 7.7
gi|169161624 PREDICTED: similar to nucleophosmin 1 [Homo sapiens] 26 7.7
gi|169162829 PREDICTED: similar to nucleophosmin 1 [Homo sapiens] 26 7.7
gi|5031795 inhibin beta C chain preproprotein [Homo sapiens] 26 7.7
gi|153945734 teashirt zinc finger homeobox 2 [Homo sapiens] 26 7.7
>gi|110349727 nuclear cap binding protein subunit 2, 20kDa isoform 2
[Homo sapiens]
Length = 103
Score = 214 bits (545), Expect = 1e-56
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MSGGLLKALRSDSYVELSQYRDQHFRGDNEEQEKLLKKSYAENAMRYINGTRLDDRIIRT 60
MSGGLLKALRSDSYVELSQYRDQHFRGDNEEQEKLLKKSYAENAMRYINGTRLDDRIIRT
Sbjct: 1 MSGGLLKALRSDSYVELSQYRDQHFRGDNEEQEKLLKKSYAENAMRYINGTRLDDRIIRT 60
Query: 61 DWDAGFKEGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ 103
DWDAGFKEGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ
Sbjct: 61 DWDAGFKEGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ 103
>gi|19923387 nuclear cap binding protein subunit 2, 20kDa isoform 1
[Homo sapiens]
Length = 156
Score = 183 bits (465), Expect = 2e-47
Identities = 100/156 (64%), Positives = 102/156 (65%), Gaps = 53/156 (33%)
Query: 1 MSGGLLKALRSDSYVELSQYRDQHFRGDNEEQEKLLK----------------------- 37
MSGGLLKALRSDSYVELSQYRDQHFRGDNEEQEKLLK
Sbjct: 1 MSGGLLKALRSDSYVELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELF 60
Query: 38 ------------------------------KSYAENAMRYINGTRLDDRIIRTDWDAGFK 67
++ AENAMRYINGTRLDDRIIRTDWDAGFK
Sbjct: 61 SKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK 120
Query: 68 EGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ 103
EGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ
Sbjct: 121 EGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ 156
>gi|239757879 PREDICTED: similar to Nuclear cap-binding protein
subunit 2-like [Homo sapiens]
Length = 114
Score = 104 bits (260), Expect = 1e-23
Identities = 55/109 (50%), Positives = 69/109 (63%), Gaps = 13/109 (11%)
Query: 6 LKALRSDSYVELSQYRDQHFRGDNEEQEKLLKKSYAENAMRY-------------INGTR 52
LK L D +ELS YRD F G +QEKLLK+S N + GT
Sbjct: 5 LKILCKDPALELSCYRDHQFSGRKFQQEKLLKESSTLNMGNLSFYTTEEKIHELLLTGTC 64
Query: 53 LDDRIIRTDWDAGFKEGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQ 101
LD+ II TDWD GF+EG+QYGRG+SGGQVRDE+R+D+ +GRGG+G+ Q
Sbjct: 65 LDEWIICTDWDVGFREGQQYGRGKSGGQVRDEFREDFHSGRGGFGRQTQ 113
>gi|5803137 RNA binding motif protein 3 [Homo sapiens]
Length = 157
Score = 34.3 bits (77), Expect = 0.022
Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 40 YAENAMRYINGTRLDDRIIRTDWDAGFKEGRQ------YGRGRS----GGQVRDEYRQDY 89
+A AMR +NG LD R IR D G + +GRGRS GG + Y
Sbjct: 59 HASVAMRAMNGESLDGRQIRVDHAGKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYY 118
Query: 90 DAGRGGYG 97
D+ GGYG
Sbjct: 119 DSRPGGYG 126
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 30.8 bits (68), Expect = 0.24
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 20 YRDQHFRGDNEEQEKLLKKSYAENAMRYINGTRLDDRIIRTDWD-AGFKEGRQYGRGRSG 78
Y D H NE + + S + A+ ++GT ++ R IR D G + R Y R RS
Sbjct: 132 YADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDKPGSRRRRSYSRSRSH 191
Query: 79 GQVRDEYRQDYDA-GRGGYGKLAQNQ 103
+ R R + R G K + ++
Sbjct: 192 SRSRSRSRHSRKSRSRSGSSKSSHSK 217
Score = 26.2 bits (56), Expect = 5.9
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
Query: 13 SYVELSQYRDQHFRGDNEEQEKLLKKSY----------AENAMRYINGTRLDDRIIRTDW 62
SY + ++ F+G + E LK Y A++A+ +NG L + +
Sbjct: 10 SYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEH 69
Query: 63 DAGFKEGRQYGRGRSGGQVRDEYRQDY 89
G + YG GRSG R R Y
Sbjct: 70 ARGPRRDGSYGSGRSGYGYRRSGRDKY 96
>gi|22094125 zinc finger protein 28 [Homo sapiens]
Length = 868
Score = 30.4 bits (67), Expect = 0.31
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 26 RGDNEEQEKLLKK-SYAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGR 76
R +E QE K+ SYAE + T+LD R +WD+ + GR+ G+
Sbjct: 302 RSVHETQELFPKQDSYAEGVTDRTSNTKLDCSSFRENWDSDYVFGRKLAVGQ 353
>gi|14702180 eukaryotic translation initiation factor 4H isoform 2
[Homo sapiens]
Length = 228
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 42 ENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRDEYRQDYDAGRGG 95
+ A+ Y +G L DR +R D G K+ + R GG +R D+ GRGG
Sbjct: 96 KEALTY-DGALLGDRSLRVDIAEGRKQDKGGFGFRKGGPDDRGFRDDFLGGRGG 148
>gi|15826852 acyl-Coenzyme A binding domain containing 3 [Homo
sapiens]
Length = 528
Score = 30.0 bits (66), Expect = 0.41
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 5 LLKALRSDSYVELSQYRDQHFRGDNEEQEKLLKKSYAENAMRYI 48
++ AL S + V+ QY Q + G+ E+Q+ L+++ ++ +Y+
Sbjct: 246 IMAALNSQTAVQFQQYAAQQYPGNYEQQQILIRQLQEQHYQQYM 289
>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
Length = 589
Score = 29.6 bits (65), Expect = 0.53
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 13 SYVELSQYRDQHFRGDNEEQEKLLKKSYAENAMRYINGTRLDDRIIRTDWDAGFKEGRQY 72
SY E S Y QH D+ Q + +SY Y + T+ D R D ++ R Y
Sbjct: 125 SYDEQSNYDQQH---DSYSQNQ---QSYHSQRENYSHHTQDD----RRDVSRYGEDNRGY 174
Query: 73 GRGRSGGQVRDEYRQDYDAGRG 94
G + GG+ R Y +D GRG
Sbjct: 175 GGSQGGGRGRGGYDKD---GRG 193
Score = 25.8 bits (55), Expect = 7.7
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 72 YGRGRSGGQVRDEYRQDYDAGRGGYG 97
YG RSGG + Y RGGYG
Sbjct: 546 YGGDRSGGGYGGDRGGGYGGDRGGYG 571
>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
Length = 592
Score = 29.6 bits (65), Expect = 0.53
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 13 SYVELSQYRDQHFRGDNEEQEKLLKKSYAENAMRYINGTRLDDRIIRTDWDAGFKEGRQY 72
SY E S Y QH D+ Q + +SY Y + T+ D R D ++ R Y
Sbjct: 128 SYDEQSNYDQQH---DSYSQNQ---QSYHSQRENYSHHTQDD----RRDVSRYGEDNRGY 177
Query: 73 GRGRSGGQVRDEYRQDYDAGRG 94
G + GG+ R Y +D GRG
Sbjct: 178 GGSQGGGRGRGGYDKD---GRG 196
Score = 25.8 bits (55), Expect = 7.7
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 72 YGRGRSGGQVRDEYRQDYDAGRGGYG 97
YG RSGG + Y RGGYG
Sbjct: 549 YGGDRSGGGYGGDRGGGYGGDRGGYG 574
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 29.6 bits (65), Expect = 0.53
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 62 WDAGFKEGRQYGRGRSGGQVRDEYRQDYDAGRGGYG 97
W G G +G G GG+ + R DY GRGGYG
Sbjct: 366 WGGGGGGGGGWGGGGGGGRGGFQGRGDY-GGRGGYG 400
>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
Length = 172
Score = 28.5 bits (62), Expect = 1.2
Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 22/78 (28%)
Query: 41 AENAMRYINGTRLDDRIIRTDWDAG--------------------FKEGRQYGRGRS-GG 79
A++AM +NG +D R IR D AG F+ GR GRG S GG
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVD-QAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGG 118
Query: 80 QVRDEYRQDYDAGRGGYG 97
R +++ GGYG
Sbjct: 119 GDRGYGGNRFESRSGGYG 136
>gi|4758138 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Homo sapiens]
Length = 614
Score = 27.7 bits (60), Expect = 2.0
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 68 EGRQYGRGRSGGQVRDEYRQDYDAG-RGGY 96
E R GR R G ++D+ R Y AG RGG+
Sbjct: 476 EDRGSGRSRGRGGMKDDRRDRYSAGKRGGF 505
>gi|103471997 DNA-directed RNA polymerase I A [Homo sapiens]
Length = 1720
Score = 27.3 bits (59), Expect = 2.6
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 33 EKLLKKSYAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRDEYRQDYDA 91
E + KK+ +A R +N R R + + G G Q G G + D ++ DA
Sbjct: 1352 ESIKKKNNKASAFRNVNTRRATQRDLDNAGELGRSRGEQEGDEEEEGHIVDAEAEEGDA 1410
>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
Length = 288
Score = 26.6 bits (57), Expect = 4.5
Identities = 25/77 (32%), Positives = 28/77 (36%), Gaps = 20/77 (25%)
Query: 41 AENAMRYINGTRLDDRIIRTDWD---------AGFKEGR-QYGRGR----------SGGQ 80
A+ A NG LD R IR D+ G GR YG R G
Sbjct: 172 AKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYD 231
Query: 81 VRDEYRQDYDAGRGGYG 97
RD Y + Y G GG G
Sbjct: 232 DRDYYSRSYRGGGGGGG 248
>gi|4505101 microtubule-associated protein 7 [Homo sapiens]
Length = 749
Score = 26.6 bits (57), Expect = 4.5
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 19 QYRDQHFRGDNEEQEKLLKKSYAENAMRYINGTRLDDR 56
Q R++HF+ EEQE+L +K E M+ T D+
Sbjct: 583 QEREKHFQ--REEQERLERKKRLEEIMKRTRRTEATDK 618
>gi|9558733 transformer-2 alpha [Homo sapiens]
Length = 282
Score = 26.2 bits (56), Expect = 5.9
Identities = 23/77 (29%), Positives = 28/77 (36%), Gaps = 21/77 (27%)
Query: 41 AENAMRYINGTRLDDRIIRTDW--------------------DAGFKEGRQYGRGRSGGQ 80
++ AM NG LD R IR D+ G G G G GG+
Sbjct: 173 SKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGR 232
Query: 81 VRDE-YRQDYDAGRGGY 96
RD Y + YD G Y
Sbjct: 233 RRDSYYDRGYDRGYDRY 249
>gi|169161779 PREDICTED: similar to nucleophosmin 1 [Homo sapiens]
Length = 186
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 6 LKALRSDSYV---ELSQYRDQHFRGDNEEQEKLL 36
+ LR +Y+ EL +D HF+ DN+E E L
Sbjct: 5 MSPLRPQNYLFGCELKADKDDHFKVDNDENEHQL 38
>gi|169161624 PREDICTED: similar to nucleophosmin 1 [Homo sapiens]
Length = 186
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 6 LKALRSDSYV---ELSQYRDQHFRGDNEEQEKLL 36
+ LR +Y+ EL +D HF+ DN+E E L
Sbjct: 5 MSPLRPQNYLFGCELKADKDDHFKVDNDENEHQL 38
>gi|169162829 PREDICTED: similar to nucleophosmin 1 [Homo sapiens]
Length = 186
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 6 LKALRSDSYV---ELSQYRDQHFRGDNEEQEKLL 36
+ LR +Y+ EL +D HF+ DN+E E L
Sbjct: 5 MSPLRPQNYLFGCELKADKDDHFKVDNDENEHQL 38
>gi|5031795 inhibin beta C chain preproprotein [Homo sapiens]
Length = 352
Score = 25.8 bits (55), Expect = 7.7
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 28 DNEEQEKLLKKSYAENAMRYINGTRLDDRIIRTDWDAGFKEGRQ 71
DN EQE + S+AE + IN TRLD +D AG +E +Q
Sbjct: 90 DNREQECEII-SFAETGLSTINQTRLDFH-FSSDRTAGDREVQQ 131
>gi|153945734 teashirt zinc finger homeobox 2 [Homo sapiens]
Length = 1034
Score = 25.8 bits (55), Expect = 7.7
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 12 DSYVELSQYRDQ--HFRGDNEEQEKLLKKSYAENAMR 46
D+ VEL+ + ++ H++ DN +++KL SY++ R
Sbjct: 225 DTLVELTVHMNETGHYQDDNRKKDKLRPTSYSKPRKR 261
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.136 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,839,420
Number of Sequences: 37866
Number of extensions: 152527
Number of successful extensions: 345
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 321
Number of HSP's gapped (non-prelim): 32
length of query: 103
length of database: 18,247,518
effective HSP length: 74
effective length of query: 29
effective length of database: 15,445,434
effective search space: 447917586
effective search space used: 447917586
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.