Guide to the Human Genome
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Name: NCBP2 Sequence: fasta or formatted (156aa) NCBI GI: 19923387
Description:

nuclear cap binding protein subunit 2, 20kDa isoform 1

Referenced in:

Capping and Splicing

Other entries for this name:
alt prot [103aa] nuclear cap binding protein subunit 2, 20kDa isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1          8           1
 C cysteine            1.9          3           1
 D aspartate           8.3         13           2
 E glutamate           7.1         11           2
 F phenylalanine       3.8          6           1
 G glycine            11.5         18           2
 H histidine           0.6          1           1
 I isoleucine          4.5          7           2
 K lysine              7.7         12           2
 L leucine             7.7         12           2
 M methionine          2.6          4           1
 N asparagine          3.2          5           1
 P proline             0.0          0           0
 Q glutamine           5.8          9           1
 R arginine            9.0         14           1
 S serine              6.4         10           1
 T threonine           3.8          6           2
 V valine              2.6          4           1
 W tryptophan          0.6          1           1
 Y tyrosine            7.7         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear cap binding protein subunit 2, 20kDa isoform... 
NCBP2                 0.532   nuclear cap binding protein subunit 2, 20kDa isofor...
LOC100293607          0.337   PREDICTED: similar to Nuclear cap-binding protein s...
CIRBP                 0.131   cold inducible RNA binding protein 
TRA2B                 0.128   splicing factor, arginine/serine-rich 10 
RBM3                  0.125   RNA binding motif protein 3 
RBM19                 0.108   RNA binding motif protein 19 
RBM19                 0.108   RNA binding motif protein 19 
RBM19                 0.108   RNA binding motif protein 19 
EIF4H                 0.108   eukaryotic translation initiation factor 4H isoform ...
RBMXL1                0.104   RNA binding motif protein, X-linked-like 1 
RBMXL1                0.104   RNA binding motif protein, X-linked-like 1 
EIF3G                 0.101   eukaryotic translation initiation factor 3, subunit ...
TRA2A                 0.098   transformer-2 alpha 
EIF4H                 0.094   eukaryotic translation initiation factor 4H isoform ...
RBMX                  0.094   RNA binding motif protein, X-linked 
ZCRB1                 0.094   zinc finger CCHC-type and RNA binding motif 1 
PABPC1L2B             0.091   poly(A) binding protein, cytoplasmic 1-like 2B [Hom...
PABPC1L2A             0.091   poly(A) binding protein, cytoplasmic 1-like 2A [Homo...
TIAL1                 0.088   TIA-1 related protein isoform 1 
RBM8A                 0.088   RNA binding motif protein 8A 
SFRS2                 0.088   splicing factor, arginine/serine-rich 2 
CSTF2T                0.088   cleavage stimulation factor, 3' pre-RNA, subunit 2, ...
CSTF2                 0.084   cleavage stimulation factor subunit 2 
RBMY1F                0.084   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1J                0.084   RNA binding motif protein, Y-linked, family 1, membe...
SFRS2B                0.084   splicing factor, arginine/serine-rich 2B 
TIA1                  0.081   TIA1 protein isoform 1 
TIA1                  0.081   TIA1 protein isoform 2 
TIAL1                 0.081   TIA-1 related protein isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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