Guide to the Human Genome
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Name: EIF4H Sequence: fasta or formatted (228aa) NCBI GI: 14702180
Description:

eukaryotic translation initiation factor 4H isoform 2

Referenced in:

Translation Factors

Other entries for this name:
alt prot [248aa] eukaryotic translation initiation factor 4H isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         13           1
 C cysteine            0.4          1           1
 D aspartate          10.1         23           2
 E glutamate           6.1         14           3
 F phenylalanine       6.1         14           1
 G glycine            13.6         31           3
 H histidine           0.4          1           1
 I isoleucine          2.2          5           1
 K lysine              4.8         11           1
 L leucine             6.1         14           2
 M methionine          1.3          3           1
 N asparagine          2.6          6           1
 P proline             7.0         16           2
 Q glutamine           3.5          8           1
 R arginine           11.8         27           2
 S serine              6.1         14           2
 T threonine           4.4         10           1
 V valine              4.8         11           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.6          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   eukaryotic translation initiation factor 4H isoform ... 
EIF4H                 0.973   eukaryotic translation initiation factor 4H isoform ...
EIF4B                 0.144   eukaryotic translation initiation factor 4B 
CIRBP                 0.095   cold inducible RNA binding protein 
NCBP2                 0.072   nuclear cap binding protein subunit 2, 20kDa isoform...
FUS                   0.072   fusion (involved in t(12;16) in malignant liposarcoma...
RBMX                  0.068   RNA binding motif protein, X-linked 
NCL                   0.068   nucleolin 
RBMXL1                0.063   RNA binding motif protein, X-linked-like 1 
RBMXL1                0.063   RNA binding motif protein, X-linked-like 1 
RBM34                 0.063   RNA binding motif protein 34 isoform 1 
EWSR1                 0.061   Ewing sarcoma breakpoint region 1 isoform 4 
EWSR1                 0.061   Ewing sarcoma breakpoint region 1 isoform 2 
RBMX2                 0.061   RNA binding motif protein, X-linked 2 
HNRPDL                0.054   heterogeneous nuclear ribonucleoprotein D-like [Homo...
TAF15                 0.050   TBP-associated factor 15 isoform 2 
TAF15                 0.050   TBP-associated factor 15 isoform 1 
CSTF2T                0.050   cleavage stimulation factor, 3' pre-RNA, subunit 2, ...
RBMXL2                0.050   testes-specific heterogenous nuclear ribonucleoprot...
EWSR1                 0.047   Ewing sarcoma breakpoint region 1 isoform 3 
EWSR1                 0.047   Ewing sarcoma breakpoint region 1 isoform 1 
CSTF2                 0.047   cleavage stimulation factor subunit 2 
SNRNP70               0.047   U1 small nuclear ribonucleoprotein 70 kDa 
TRA2A                 0.047   transformer-2 alpha 
LOC100288788          0.045   PREDICTED: similar to RNA binding motif protein, X-...
LOC100288788          0.045   PREDICTED: hypothetical protein XP_002343863 
RBM3                  0.045   RNA binding motif protein 3 
SFRS2                 0.043   splicing factor, arginine/serine-rich 2 
PABPN1                0.043   poly(A) binding protein, nuclear 1 
HNRNPD                0.043   heterogeneous nuclear ribonucleoprotein D isoform c ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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