Guide to the Human Genome
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Name: LOC100293607 Sequence: fasta or formatted (114aa) NCBI GI: 239757879
Description:

PREDICTED: similar to Nuclear cap-binding protein subunit 2-like

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.9          1           1
 C cysteine            3.5          4           1
 D aspartate           7.0          8           1
 E glutamate           8.8         10           2
 F phenylalanine       6.1          7           1
 G glycine            11.4         13           2
 H histidine           2.6          3           1
 I isoleucine          4.4          5           2
 K lysine              7.0          8           1
 L leucine            10.5         12           3
 M methionine          1.8          2           1
 N asparagine          1.8          2           1
 P proline             0.9          1           1
 Q glutamine           7.0          8           2
 R arginine            7.0          8           1
 S serine              7.0          8           2
 T threonine           6.1          7           2
 V valine              1.8          2           1
 W tryptophan          1.8          2           1
 Y tyrosine            2.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Nuclear cap-binding protein s... 
NCBP2                 0.461   nuclear cap binding protein subunit 2, 20kDa isoform...
NCBP2                 0.364   nuclear cap binding protein subunit 2, 20kDa isofor...
PPAP2B                0.009   phosphatidic acid phosphatase type 2B 
PPAP2B                0.009   phosphatidic acid phosphatase type 2B 
EIF4H                 0.009   eukaryotic translation initiation factor 4H isoform ...
NCL                   0.005   nucleolin 
EIF4H                 0.005   eukaryotic translation initiation factor 4H isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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