POU5F1 28034

Name: POU5F1	Sequence: fasta or formatted (360aa)		NCBI GI: 42560248
Description: POU domain, class 5, transcription factor 1 isoform 1		Referenced in: POU Domain Stem Cells and Early Development
Other entries for this name: alt prot [265aa] POU domain, class 5, transcription factor 1 isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.8 21 2 C cysteine 2.5 9 1 D aspartate 2.8 10 1 E glutamate 7.8 28 2 F phenylalanine 5.0 18 1 G glycine 12.8 46 4 H histidine 1.4 5 1 I isoleucine 2.5 9 1 K lysine 5.3 19 1 L leucine 8.3 30 2 M methionine 1.1 4 1 N asparagine 3.1 11 2 P proline 10.8 39 3 Q glutamine 6.1 22 2 R arginine 3.9 14 2 S serine 6.9 25 3 T threonine 4.4 16 2 V valine 6.4 23 2 W tryptophan 1.4 5 1 Y tyrosine 1.7 6 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 POU domain, class 5, transcription factor 1 isoform ... POU5F1B 0.948 POU class 5 homeobox 1B POU5F1 0.594 POU domain, class 5, transcription factor 1 isoform... POU5F2 0.342 POU domain class 5, transcription factor 2 POU3F1 0.243 POU domain, class 3, transcription factor 1 POU3F3 0.226 POU class 3 homeobox 3 POU3F4 0.226 POU domain, class 3, transcription factor 4 POU3F2 0.222 POU domain, class 3, transcription factor 2 POU2F2 0.206 POU domain, class 2, transcription factor 2 POU2F1 0.203 POU class 2 homeobox 1 POU2F3 0.193 POU transcription factor POU4F1 0.160 POU domain, class 4, transcription factor 1 POU1F1 0.159 pituitary specific transcription factor 1 isoform b... POU1F1 0.159 pituitary specific transcription factor 1 isoform alp... POU4F2 0.143 Brn3b POU domain transcription factor POU4F3 0.137 POU class 4 homeobox 3 POU6F1 0.123 POU class 6 homeobox 1 POU6F2 0.085 POU domain, class 6, transcription factor 2 ARX 0.037 aristaless related homeobox LHX1 0.033 LIM homeobox protein 1 LHX5 0.032 LIM homeobox protein 5 NKX2-6 0.032 NK2 transcription factor related, locus 6 LHX4 0.030 LIM homeobox protein 4 VAX2 0.030 ventral anterior homeobox 2 LHX3 0.030 LIM homeobox protein 3 isoform a LHX3 0.030 LIM homeobox protein 3 isoform b ARGFX 0.030 arginine-fifty homeobox WAS 0.027 Wiskott-Aldrich syndrome protein HLX 0.027 H2.0-like homeobox ZFHX4 0.027 zinc finger homeodomain 4 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.