POU5F1 1720

Name: POU5F1	Sequence: fasta or formatted (265aa)		NCBI GI: 116235491
Description: POU domain, class 5, transcription factor 1 isoform 2		Referenced in: POU Domain Stem Cells and Early Development
Other entries for this name: alt prot [360aa] POU domain, class 5, transcription factor 1 isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.7 15 2 C cysteine 2.3 6 1 D aspartate 2.6 7 1 E glutamate 6.4 17 2 F phenylalanine 6.8 18 1 G glycine 6.8 18 2 H histidine 1.9 5 1 I isoleucine 3.4 9 1 K lysine 6.8 18 1 L leucine 11.3 30 2 M methionine 1.1 3 1 N asparagine 4.2 11 2 P proline 6.4 17 2 Q glutamine 6.8 18 2 R arginine 6.0 16 2 S serine 6.8 18 3 T threonine 5.3 14 2 V valine 5.7 15 2 W tryptophan 1.5 4 1 Y tyrosine 2.3 6 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 POU domain, class 5, transcription factor 1 isoform... POU5F1 0.834 POU domain, class 5, transcription factor 1 isoform ... POU5F1B 0.798 POU class 5 homeobox 1B POU5F2 0.345 POU domain class 5, transcription factor 2 POU3F3 0.316 POU class 3 homeobox 3 POU3F1 0.316 POU domain, class 3, transcription factor 1 POU3F2 0.312 POU domain, class 3, transcription factor 2 POU3F4 0.310 POU domain, class 3, transcription factor 4 POU2F1 0.279 POU class 2 homeobox 1 POU2F2 0.276 POU domain, class 2, transcription factor 2 POU2F3 0.268 POU transcription factor POU1F1 0.222 pituitary specific transcription factor 1 isoform b... POU1F1 0.222 pituitary specific transcription factor 1 isoform alp... POU4F2 0.200 Brn3b POU domain transcription factor POU4F3 0.193 POU class 4 homeobox 3 POU4F1 0.193 POU domain, class 4, transcription factor 1 POU6F1 0.168 POU class 6 homeobox 1 POU6F2 0.118 POU domain, class 6, transcription factor 2 LHX1 0.046 LIM homeobox protein 1 LHX5 0.044 LIM homeobox protein 5 NKX2-6 0.044 NK2 transcription factor related, locus 6 LHX4 0.042 LIM homeobox protein 4 VAX2 0.042 ventral anterior homeobox 2 LHX3 0.042 LIM homeobox protein 3 isoform a LHX3 0.042 LIM homeobox protein 3 isoform b ARGFX 0.042 arginine-fifty homeobox HLX 0.039 H2.0-like homeobox ZFHX4 0.039 zinc finger homeodomain 4 ARX 0.037 aristaless related homeobox PRRX2 0.037 paired related homeobox 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.