Guide to the Human Genome
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Name: POU2F2 Sequence: fasta or formatted (463aa) NCBI GI: 4505959
Description:

POU domain, class 2, transcription factor 2

Referenced in:

POU Domain

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         32           2
 C cysteine            0.9          4           1
 D aspartate           2.6         12           1
 E glutamate           5.0         23           2
 F phenylalanine       2.8         13           1
 G glycine             8.0         37           8
 H histidine           2.4         11           2
 I isoleucine          2.6         12           1
 K lysine              4.5         21           2
 L leucine            11.4         53           2
 M methionine          2.2         10           1
 N asparagine          4.1         19           1
 P proline            13.2         61           4
 Q glutamine           8.0         37           2
 R arginine            3.7         17           3
 S serine             10.6         49           3
 T threonine           6.9         32           2
 V valine              2.8         13           1
 W tryptophan          0.9          4           2
 Y tyrosine            0.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   POU domain, class 2, transcription factor 2 
POU2F1                0.350   POU class 2 homeobox 1 
POU2F3                0.327   POU transcription factor 
POU3F2                0.194   POU domain, class 3, transcription factor 2 
POU3F1                0.188   POU domain, class 3, transcription factor 1 
POU3F4                0.185   POU domain, class 3, transcription factor 4 
POU3F3                0.184   POU class 3 homeobox 3 
POU5F1                0.163   POU domain, class 5, transcription factor 1 isoform ...
POU5F1                0.156   POU domain, class 5, transcription factor 1 isoform...
POU5F1B               0.153   POU class 5 homeobox 1B 
POU1F1                0.147   pituitary specific transcription factor 1 isoform b...
POU1F1                0.147   pituitary specific transcription factor 1 isoform alp...
POU6F1                0.124   POU class 6 homeobox 1 
POU4F3                0.119   POU class 4 homeobox 3 
POU4F1                0.118   POU domain, class 4, transcription factor 1 
POU4F2                0.115   Brn3b POU domain transcription factor 
POU5F2                0.105   POU domain class 5, transcription factor 2 
POU6F2                0.087   POU domain, class 6, transcription factor 2 
ZFHX2                 0.032   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.032   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.032   PREDICTED: zinc finger homeobox 2 
VAX1                  0.032   ventral anterior homeobox 1 isoform a 
CRX                   0.029   cone-rod homeobox protein 
LHX1                  0.029   LIM homeobox protein 1 
EP300                 0.028   E1A binding protein p300 
LHX5                  0.028   LIM homeobox protein 5 
NKX2-3                0.028   NK2 transcription factor related, locus 3 
ZFHX3                 0.027   AT-binding transcription factor 1 
PROP1                 0.027   PROP paired-like homeobox 1 
OTX1                  0.026   orthodenticle homeobox 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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