Guide to the Human Genome
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Name: POU2F3 Sequence: fasta or formatted (436aa) NCBI GI: 148664218
Description:

POU transcription factor

Referenced in:

POU Domain

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         20           2
 C cysteine            1.4          6           1
 D aspartate           3.7         16           1
 E glutamate           4.8         21           2
 F phenylalanine       3.2         14           1
 G glycine             6.9         30           2
 H histidine           3.0         13           1
 I isoleucine          2.3         10           1
 K lysine              5.0         22           2
 L leucine            10.8         47           3
 M methionine          2.8         12           2
 N asparagine          5.3         23           2
 P proline             8.9         39           2
 Q glutamine           6.7         29           3
 R arginine            4.4         19           2
 S serine             14.9         65           2
 T threonine           4.8         21           2
 V valine              4.6         20           2
 W tryptophan          0.9          4           1
 Y tyrosine            1.1          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   POU transcription factor 
POU2F2                0.350   POU domain, class 2, transcription factor 2 
POU2F1                0.311   POU class 2 homeobox 1 
POU3F1                0.213   POU domain, class 3, transcription factor 1 
POU3F2                0.207   POU domain, class 3, transcription factor 2 
POU3F3                0.207   POU class 3 homeobox 3 
POU3F4                0.203   POU domain, class 3, transcription factor 4 
POU5F1                0.165   POU domain, class 5, transcription factor 1 isoform ...
POU5F1                0.162   POU domain, class 5, transcription factor 1 isoform...
POU5F1B               0.160   POU class 5 homeobox 1B 
POU1F1                0.157   pituitary specific transcription factor 1 isoform b...
POU1F1                0.157   pituitary specific transcription factor 1 isoform alp...
POU4F2                0.140   Brn3b POU domain transcription factor 
POU4F3                0.138   POU class 4 homeobox 3 
POU4F1                0.134   POU domain, class 4, transcription factor 1 
POU6F1                0.119   POU class 6 homeobox 1 
POU5F2                0.113   POU domain class 5, transcription factor 2 
POU6F2                0.099   POU domain, class 6, transcription factor 2 
GBX1                  0.039   gastrulation brain homeo box 1 
ZFHX4                 0.029   zinc finger homeodomain 4 
NKX2-8                0.029   NK2 homeobox 8 
GBX2                  0.028   gastrulation brain homeo box 2 
LBX1                  0.027   ladybird homeobox 1 
LHX5                  0.026   LIM homeobox protein 5 
LHX4                  0.026   LIM homeobox protein 4 
LHX1                  0.026   LIM homeobox protein 1 
CUX2                  0.025   cut-like 2 
ARX                   0.025   aristaless related homeobox 
NKX2-5                0.025   NK2 transcription factor related, locus 5 
CDX1                  0.025   caudal type homeobox 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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