Guide to the Human Genome
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Name: MAP4 Sequence: fasta or formatted (817aa) NCBI GI: 197276602
Description:

microtubule-associated protein 4 isoform 5

Referenced in:

Tubulins and Microtubules

Other entries for this name:
alt prot [1135aa] microtubule-associated protein 4 isoform 4
alt prot [1152aa] microtubule-associated protein 4 isoform 1
alt prot [887aa] microtubule-associated protein 4 isoform 2
alt prot [99aa] microtubule-associated protein 4 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         75           3
 C cysteine            0.7          6           1
 D aspartate           4.0         33           1
 E glutamate           7.5         61           2
 F phenylalanine       0.9          7           1
 G glycine             7.6         62           3
 H histidine           1.6         13           1
 I isoleucine          3.8         31           1
 K lysine             10.8         88           2
 L leucine             6.6         54           2
 M methionine          1.7         14           1
 N asparagine          3.2         26           1
 P proline            10.5         86           2
 Q glutamine           3.4         28           1
 R arginine            3.2         26           1
 S serine             10.9         89           2
 T threonine           8.4         69           3
 V valine              5.5         45           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   microtubule-associated protein 4 isoform 5 
MAP4                  0.968   microtubule-associated protein 4 isoform 2 
MAP4                  0.472   microtubule-associated protein 4 isoform 1 
MAP4                  0.391   microtubule-associated protein 4 isoform 4 
MAPT                  0.091   microtubule-associated protein tau isoform 6 
MAP2                  0.091   microtubule-associated protein 2 isoform 1 
MAP2                  0.090   microtubule-associated protein 2 isoform 2 
MAPT                  0.087   microtubule-associated protein tau isoform 1 
MAP2                  0.083   microtubule-associated protein 2 isoform 4 
MAP2                  0.082   microtubule-associated protein 2 isoform 5 
MAPT                  0.080   microtubule-associated protein tau isoform 4 
MAPT                  0.076   microtubule-associated protein tau isoform 2 
MAPT                  0.074   microtubule-associated protein tau isoform 5 
MAPT                  0.073   microtubule-associated protein tau isoform 3 
PRG4                  0.045   proteoglycan 4 isoform B 
PRG4                  0.045   proteoglycan 4 isoform A 
PRG4                  0.042   proteoglycan 4 isoform D 
PRG4                  0.042   proteoglycan 4 isoform C 
TTN                   0.035   titin isoform N2-A 
MUC2                  0.035   mucin 2 precursor 
POM121                0.033   nuclear pore membrane protein 121 
POM121C               0.030   POM121 membrane glycoprotein (rat)-like 
NACA                  0.030   nascent polypeptide-associated complex alpha subuni...
NOLC1                 0.030   nucleolar and coiled-body phosphoprotein 1 
LOC100288540          0.030   PREDICTED: hypothetical protein XP_002342775 
PCLO                  0.028   piccolo isoform 2 
PCLO                  0.028   piccolo isoform 1 
NEFH                  0.027   neurofilament, heavy polypeptide 200kDa 
KIAA0754              0.027   hypothetical protein LOC643314 
MUC17                 0.026   mucin 17 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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