Guide to the Human Genome
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Name: MAP4 Sequence: fasta or formatted (887aa) NCBI GI: 47519675
Description:

microtubule-associated protein 4 isoform 2

Referenced in:

Tubulins and Microtubules

Other entries for this name:
alt prot [1135aa] microtubule-associated protein 4 isoform 4
alt prot [817aa] microtubule-associated protein 4 isoform 5
alt prot [1152aa] microtubule-associated protein 4 isoform 1
alt prot [99aa] microtubule-associated protein 4 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         84           3
 C cysteine            0.8          7           1
 D aspartate           3.8         34           1
 E glutamate           7.2         64           2
 F phenylalanine       0.8          7           1
 G glycine             7.7         68           3
 H histidine           1.7         15           1
 I isoleucine          4.1         36           1
 K lysine             11.3        100           2
 L leucine             6.1         54           2
 M methionine          1.6         14           1
 N asparagine          3.2         28           1
 P proline            10.1         90           2
 Q glutamine           3.6         32           1
 R arginine            3.0         27           1
 S serine             10.9         97           2
 T threonine           8.3         74           3
 V valine              5.7         51           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.6          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   microtubule-associated protein 4 isoform 2 
MAP4                  0.864   microtubule-associated protein 4 isoform 5 
MAP4                  0.542   microtubule-associated protein 4 isoform 1 
MAP4                  0.467   microtubule-associated protein 4 isoform 4 
MAPT                  0.109   microtubule-associated protein tau isoform 6 
MAPT                  0.105   microtubule-associated protein tau isoform 1 
MAP2                  0.098   microtubule-associated protein 2 isoform 4 
MAP2                  0.097   microtubule-associated protein 2 isoform 5 
MAPT                  0.095   microtubule-associated protein tau isoform 2 
MAPT                  0.093   microtubule-associated protein tau isoform 5 
MAPT                  0.093   microtubule-associated protein tau isoform 3 
MAP2                  0.067   microtubule-associated protein 2 isoform 2 
MAP2                  0.063   microtubule-associated protein 2 isoform 1 
MAPT                  0.060   microtubule-associated protein tau isoform 4 
PRG4                  0.044   proteoglycan 4 isoform B 
PRG4                  0.044   proteoglycan 4 isoform A 
PRG4                  0.041   proteoglycan 4 isoform D 
PRG4                  0.041   proteoglycan 4 isoform C 
TTN                   0.034   titin isoform N2-A 
MUC2                  0.032   mucin 2 precursor 
POM121                0.031   nuclear pore membrane protein 121 
NACA                  0.031   nascent polypeptide-associated complex alpha subuni...
KIAA0754              0.028   hypothetical protein LOC643314 
NEFH                  0.028   neurofilament, heavy polypeptide 200kDa 
LOC100288540          0.027   PREDICTED: hypothetical protein XP_002342775 
POM121C               0.027   POM121 membrane glycoprotein (rat)-like 
PCLO                  0.026   piccolo isoform 2 
PCLO                  0.026   piccolo isoform 1 
NOLC1                 0.025   nucleolar and coiled-body phosphoprotein 1 
LOC100133756          0.024   PREDICTED: hypothetical protein, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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