Guide to the Human Genome
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Name: KIAA1370 Sequence: fasta or formatted (1076aa) NCBI GI: 154350236
Description:

hypothetical protein LOC56204

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.3         36           2
 C cysteine            2.4         26           2
 D aspartate           4.9         53           2
 E glutamate           6.7         72           2
 F phenylalanine       4.0         43           2
 G glycine             4.0         43           1
 H histidine           3.3         35           2
 I isoleucine          5.0         54           2
 K lysine              7.1         76           2
 L leucine             8.6         92           3
 M methionine          1.5         16           2
 N asparagine          6.2         67           2
 P proline             5.8         62           2
 Q glutamine           5.3         57           2
 R arginine            5.0         54           2
 S serine             12.5        134           3
 T threonine           6.2         67           2
 V valine              5.0         54           2
 W tryptophan          0.7          7           1
 Y tyrosine            2.6         28           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC56204 
KIAA1539              0.104   hypothetical protein LOC80256 
CCDC18                0.013   sarcoma antigen NY-SAR-41 
SYCP1                 0.013   synaptonemal complex protein 1 
GOLGA4                0.010   golgi autoantigen, golgin subfamily a, 4 
DSPP                  0.009   dentin sialophosphoprotein preproprotein 
CYLC1                 0.008   cylicin, basic protein of sperm head cytoskeleton 1...
ERC1                  0.007   RAB6-interacting protein 2 isoform epsilon 
ERC1                  0.007   RAB6-interacting protein 2 isoform delta 
CCDC80                0.007   steroid-sensitive protein 1 
CCDC80                0.007   steroid-sensitive protein 1 
SENP7                 0.007   sentrin/SUMO-specific protease 7 isoform 2 
ANKRD12               0.006   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.006   ankyrin repeat domain 12 isoform 1 
LEO1                  0.006   Leo1, Paf1/RNA polymerase II complex component, homo...
NRIP1                 0.006   nuclear receptor interacting protein 1 
RPRD2                 0.006   Regulation of nuclear pre-mRNA domain containing 2 ...
SENP7                 0.006   sentrin/SUMO-specific protease 7 isoform 1 
PMFBP1                0.006   polyamine modulated factor 1 binding protein 1 isof...
PMFBP1                0.006   polyamine modulated factor 1 binding protein 1 isof...
RSBN1L                0.006   round spermatid basic protein 1-like 
GOLGA6                0.006   golgi autoantigen, golgin subfamily a, 6 
CLIP1                 0.006   restin isoform b 
CLIP1                 0.006   restin isoform a 
PALB2                 0.005   partner and localizer of BRCA2 
CENPC1                0.005   centromere protein C 1 
PPIG                  0.005   peptidylprolyl isomerase G 
HFM1                  0.005   HFM1 protein 
RSF1                  0.005   remodeling and spacing factor 1 
CENPF                 0.005   centromere protein F 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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