HFM1 2960

Name: HFM1	Sequence: fasta or formatted (1435aa)		NCBI GI: 130484567
Description: HFM1 protein		Referenced in: DNases, Recombination, and DNA Repair
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.4 78 2 C cysteine 1.5 21 2 D aspartate 5.6 81 2 E glutamate 7.2 104 3 F phenylalanine 4.9 71 2 G glycine 4.3 62 2 H histidine 2.3 33 2 I isoleucine 6.7 96 2 K lysine 8.5 122 2 L leucine 9.3 134 2 M methionine 2.4 34 1 N asparagine 5.2 74 2 P proline 3.9 56 2 Q glutamine 4.3 61 2 R arginine 4.0 57 1 S serine 8.8 126 3 T threonine 6.3 91 2 V valine 5.9 85 3 W tryptophan 0.9 13 1 Y tyrosine 2.5 36 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 HFM1 protein ASCC3 0.108 activating signal cointegrator 1 complex subunit 3 i... SNRNP200 0.105 activating signal cointegrator 1 complex subunit 3-l... LOC652147 0.105 PREDICTED: similar to U5 snRNP-specific 200kD prote... POLQ 0.039 DNA polymerase theta HELQ 0.032 DNA helicase HEL308 SKIV2L2 0.032 superkiller viralicidic activity 2-like 2 SKIV2L 0.032 superkiller viralicidic activity 2-like homolog [Hom... DDX60 0.011 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 DDX60L 0.009 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like [Hom... DDX54 0.007 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2 ... DDX54 0.007 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 1... CTAGE1 0.006 cutaneous T-cell lymphoma-associated antigen 1 isofo... RECQL4 0.006 RecQ protein-like 4 DDX49 0.006 DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 DDX18 0.006 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 DDX50 0.006 nucleolar protein GU2 WRN 0.005 Werner syndrome protein LOC652522 0.005 PREDICTED: similar to Werner syndrome ATP-dependent... DDX4 0.005 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3 ... DDX4 0.005 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1 [... DDX4 0.005 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 2 ... FANCM 0.005 Fanconi anemia, complementation group M DDX46 0.005 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 DDX47 0.005 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 2 ... DDX47 0.005 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 ... DDX58 0.004 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide RIG-I [... DDX59 0.004 DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 DDX55 0.004 DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 KIAA1370 0.004 hypothetical protein LOC56204 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.