Guide to the Human Genome
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Name: PMFBP1 Sequence: fasta or formatted (882aa) NCBI GI: 237858621
Description:

polyamine modulated factor 1 binding protein 1 isoform b

Not currently referenced in the text

Other entries for this name:
alt prot {1007aa} polyamine modulated factor 1 binding protein 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         53           2
 C cysteine            2.6         23           2
 D aspartate           4.5         40           2
 E glutamate          13.5        119           3
 F phenylalanine       0.8          7           1
 G glycine             2.7         24           2
 H histidine           2.6         23           1
 I isoleucine          2.8         25           2
 K lysine             12.2        108           3
 L leucine            13.4        118           3
 M methionine          3.1         27           2
 N asparagine          3.6         32           1
 P proline             1.7         15           2
 Q glutamine          10.2         90           2
 R arginine            4.5         40           1
 S serine              6.2         55           3
 T threonine           4.6         41           2
 V valine              2.7         24           1
 W tryptophan          0.6          5           1
 Y tyrosine            1.5         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   polyamine modulated factor 1 binding protein 1 isof... 
PMFBP1                0.969   polyamine modulated factor 1 binding protein 1 isof...
EEA1                  0.067   early endosome antigen 1, 162kD 
GOLGA4                0.067   golgi autoantigen, golgin subfamily a, 4 
GOLGB1                0.064   golgi autoantigen, golgin subfamily b, macrogolgin ...
CENPF                 0.062   centromere protein F 
MYH9                  0.062   myosin, heavy polypeptide 9, non-muscle 
CENPE                 0.060   centromere protein E 
CCDC88A               0.059   coiled-coil domain containing 88A isoform 1 
MYH6                  0.059   myosin heavy chain 6 
MYH8                  0.059   myosin, heavy chain 8, skeletal muscle, perinatal [...
CLIP1                 0.058   restin isoform b 
CLIP1                 0.058   restin isoform a 
LOC283685             0.057   PREDICTED: golgi autoantigen, golgin subfamily a-li...
CCDC88A               0.057   coiled-coil domain containing 88A isoform 2 
CEP250                0.057   centrosomal protein 2 
CEP110                0.056   centrosomal protein 110kDa 
MYH1                  0.056   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH4                  0.056   myosin, heavy polypeptide 4, skeletal muscle 
ERC1                  0.056   RAB6-interacting protein 2 isoform epsilon 
MYH13                 0.056   myosin, heavy polypeptide 13, skeletal muscle [Homo...
MYH3                  0.055   myosin, heavy chain 3, skeletal muscle, embryonic [H...
MYH2                  0.055   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.055   myosin, heavy chain 2, skeletal muscle, adult [Homo...
GOLGA3                0.055   Golgi autoantigen, golgin subfamily a, 3 
MYH11                 0.054   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.054   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.054   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.054   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
CGN                   0.054   cingulin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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