SYCP1 26504

Name: SYCP1	Sequence: fasta or formatted (976aa)		NCBI GI: 34878904
Description: synaptonemal complex protein 1		Referenced in: Spindle, M phase, and Meiosis
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.4 43 2 C cysteine 1.1 11 1 D aspartate 4.0 39 2 E glutamate 15.8 154 3 F phenylalanine 2.4 23 2 G glycine 1.7 17 2 H histidine 1.4 14 2 I isoleucine 4.4 43 2 K lysine 14.4 141 3 L leucine 11.6 113 3 M methionine 1.6 16 1 N asparagine 5.6 55 3 P proline 1.9 19 2 Q glutamine 6.1 60 2 R arginine 3.7 36 1 S serine 6.6 64 4 T threonine 6.5 63 2 V valine 4.1 40 2 W tryptophan 0.4 4 1 Y tyrosine 2.2 21 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 synaptonemal complex protein 1 MYH10 0.066 myosin, heavy polypeptide 10, non-muscle CCDC88A 0.063 coiled-coil domain containing 88A isoform 1 EEA1 0.063 early endosome antigen 1, 162kD CCDC88A 0.063 coiled-coil domain containing 88A isoform 2 GOLGA4 0.062 golgi autoantigen, golgin subfamily a, 4 MYH9 0.061 myosin, heavy polypeptide 9, non-muscle MYH11 0.059 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... MYH11 0.059 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... MYH11 0.059 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... MYH11 0.059 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... GOLGB1 0.058 golgi autoantigen, golgin subfamily b, macrogolgin ... CLIP1 0.058 restin isoform a MYH6 0.057 myosin heavy chain 6 CENPF 0.057 centromere protein F MYH13 0.057 myosin, heavy polypeptide 13, skeletal muscle [Homo... MYH8 0.057 myosin, heavy chain 8, skeletal muscle, perinatal [... MYH4 0.056 myosin, heavy polypeptide 4, skeletal muscle MYH15 0.056 myosin, heavy polypeptide 15 ERC1 0.055 RAB6-interacting protein 2 isoform epsilon DSP 0.055 desmoplakin isoform I MYH7 0.055 myosin, heavy chain 7, cardiac muscle, beta CEP110 0.055 centrosomal protein 110kDa MYH2 0.054 myosin, heavy chain 2, skeletal muscle, adult [Homo... MYH2 0.054 myosin, heavy chain 2, skeletal muscle, adult [Homo... CCDC18 0.054 sarcoma antigen NY-SAR-41 ROCK1 0.054 Rho-associated, coiled-coil containing protein kinase... CLIP1 0.054 restin isoform b MYH1 0.053 myosin, heavy chain 1, skeletal muscle, adult [Homo... KTN1 0.053 kinectin 1 isoform c Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.