Guide to the Human Genome
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Name: PIWIL3 Sequence: fasta or formatted (882aa) NCBI GI: 153792298
Description:

piwi-like 3

Referenced in:

RNases and RNA Stability
Stem Cells and Early Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         41           2
 C cysteine            1.9         17           1
 D aspartate           4.9         43           2
 E glutamate           5.1         45           2
 F phenylalanine       2.8         25           2
 G glycine             5.8         51           3
 H histidine           2.7         24           2
 I isoleucine          6.0         53           2
 K lysine              7.3         64           3
 L leucine             9.5         84           3
 M methionine          1.9         17           1
 N asparagine          4.2         37           2
 P proline             5.0         44           3
 Q glutamine           5.6         49           2
 R arginine            7.4         65           3
 S serine              5.8         51           2
 T threonine           7.1         63           2
 V valine              7.0         62           2
 W tryptophan          1.4         12           1
 Y tyrosine            4.0         35           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   piwi-like 3 
PIWIL1                0.475   piwi-like 1 
PIWIL4                0.346   piwi-like 4 
PIWIL2                0.277   piwi-like 2 
PIWIL2                0.277   piwi-like 2 
LOC652554             0.083   PREDICTED: similar to piwi like homolog 2 
EIF2C2                0.074   eukaryotic translation initiation factor 2C, 2 [Homo...
EIF2C1                0.069   eukaryotic translation initiation factor 2C, 1 
EIF2C3                0.067   eukaryotic translation initiation factor 2C, 3 isofo...
EIF2C4                0.062   eukaryotic translation initiation factor 2C, 4 [Homo...
EIF2C3                0.059   eukaryotic translation initiation factor 2C, 3 isofo...
LOC100291220          0.007   PREDICTED: hypothetical protein XP_002347633 
LOC100287224          0.007   PREDICTED: hypothetical protein XP_002343483 
SAMD1                 0.007   sterile alpha motif domain containing 1 
KIAA1522              0.006   hypothetical protein LOC57648 
FLJ10357              0.006   hypothetical protein LOC55701 
C10orf47              0.006   hypothetical protein LOC254427 
RREB1                 0.006   ras responsive element binding protein 1 isoform 2 [...
RREB1                 0.006   ras responsive element binding protein 1 isoform 1 [...
SRRM1                 0.006   serine/arginine repetitive matrix 1 
WNK2                  0.006   WNK lysine deficient protein kinase 2 
CASKIN1               0.005   CASK interacting protein 1 
LOC100287514          0.005   PREDICTED: hypothetical protein XP_002343754 
WDR81                 0.005   PREDICTED: WD repeat domain 81 
LOC100290603          0.005   PREDICTED: hypothetical protein XP_002346928 
SYN2                  0.005   synapsin II isoform IIa 
ZNF837                0.005   zinc finger protein 837 isoform 1 
ZNF837                0.005   zinc finger protein 837 isoform 2 
SYN2                  0.005   synapsin II isoform IIb 
LOC389333             0.005   hypothetical protein LOC389333 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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