Guide to the Human Genome
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Name: LOC652554 Sequence: fasta or formatted (349aa) NCBI GI: 169217928
Description:

PREDICTED: similar to piwi like homolog 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         23           2
 C cysteine            2.3          8           2
 D aspartate           4.0         14           2
 E glutamate           4.9         17           1
 F phenylalanine       3.4         12           1
 G glycine             4.9         17           2
 H histidine           1.7          6           2
 I isoleucine          6.9         24           2
 K lysine              6.6         23           2
 L leucine            10.0         35           2
 M methionine          4.6         16           1
 N asparagine          3.4         12           1
 P proline             5.2         18           2
 Q glutamine           6.0         21           2
 R arginine            6.0         21           1
 S serine              6.9         24           3
 T threonine           5.2         18           2
 V valine              7.4         26           2
 W tryptophan          2.0          7           1
 Y tyrosine            2.0          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to piwi like homolog 2 
PIWIL2                0.842   piwi-like 2 
PIWIL2                0.842   piwi-like 2 
PIWIL1                0.309   piwi-like 1 
PIWIL4                0.232   piwi-like 4 
PIWIL3                0.216   piwi-like 3 
EIF2C1                0.052   eukaryotic translation initiation factor 2C, 1 
EIF2C2                0.037   eukaryotic translation initiation factor 2C, 2 [Homo...
EIF2C3                0.037   eukaryotic translation initiation factor 2C, 3 isofo...
EIF2C3                0.037   eukaryotic translation initiation factor 2C, 3 isofo...
ARHGAP4               0.012   Rho GTPase activating protein 4 
RPS2                  0.006   ribosomal protein S2 
MYH11                 0.004   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.004   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.004   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.004   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
OTUD6A                0.004   OTU domain containing 6A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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